>NX22A_BRARE (Q90481) Homeobox protein Nkx-2.2a (Homeobox protein NK-2 homolog|
           B)
          Length = 269

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +3

Query: 135 TTERKEDTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSH 302
           T+    D+  K +R+V      T  LE    + +  R+   PE ++L      TPTQ   
Sbjct: 115 TSSNGSDSGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKI 171

Query: 303 LFLHHRFLSKKASSWKGVGRDH 368
            F +HR+  K+A + KG+   H
Sbjct: 172 WFQNHRYKMKRARAEKGMEVTH 193

>HNK2_XENLA (P42587) Homeobox protein XENK-2|
          Length = 196

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 153 DTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 320
           D+  K +R+V      T  LE    + +  R+   PE ++L      TPTQ    F +HR
Sbjct: 65  DSGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 121

Query: 321 FLSKKASSWKGV 356
           +  K+A S KG+
Sbjct: 122 YKMKRARSEKGM 133

>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +3

Query: 165 KAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSK 332
           K +R+V      T  LE    + +  R+   PE ++L      TPTQ    F +HR+ +K
Sbjct: 545 KRKRRVLFTKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTK 601

Query: 333 KASSWKGVGRDHCISRGH 386
           +A + KG      +  GH
Sbjct: 602 RAQNEKGYEGHPGLLHGH 619

>NKX22_MOUSE (P42586) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)|
          Length = 273

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 153 DTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 320
           D   K +R+V      T  LE    + +  R+   PE ++L      TPTQ    F +HR
Sbjct: 124 DAGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 180

Query: 321 FLSKKASSWKGV 356
           +  K+A + KG+
Sbjct: 181 YKMKRARAEKGM 192

>NKX22_MESAU (P43697) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)|
          Length = 273

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 153 DTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 320
           D   K +R+V      T  LE    + +  R+   PE ++L      TPTQ    F +HR
Sbjct: 124 DAGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 180

Query: 321 FLSKKASSWKGV 356
           +  K+A + KG+
Sbjct: 181 YKMKRARAEKGM 192

>NKX22_HUMAN (O95096) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)|
          Length = 273

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 153 DTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 320
           D   K +R+V      T  LE    + +  R+   PE ++L      TPTQ    F +HR
Sbjct: 124 DAGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 180

Query: 321 FLSKKASSWKGV 356
           +  K+A + KG+
Sbjct: 181 YKMKRARAEKGM 192

>Y314_BUCAP (Q8K9M0) Hypothetical UPF0053 protein BUsg314|
          Length = 515

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 244 LMLLSFSLACSSVGVLPVSLVTCLSALHVVSSFRSVVARPNNFYSGLMYFYIRVGFQM 71
           LMLL+     + + +    +V CLS L ++    S+VA    FY    Y Y  +GF +
Sbjct: 167 LMLLASKALTNFINIHQTVVVLCLSFLLMIGF--SLVAEALKFYIPKGYLYAAIGFSI 222

>RPSC_ANASP (Q03066) RNA polymerase sigma-C factor|
          Length = 416

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 165 KAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNPTPTQTSHLFLHHRFLSKKASS 344
           KA+R++  E G TPTLE   ++              L+ TPTQ   + L    + +  S 
Sbjct: 267 KAQRKIAQEKGRTPTLEDLAIE--------------LDMTPTQVREVLLR---VPRSVSL 309

Query: 345 WKGVGRD 365
              VG+D
Sbjct: 310 ETKVGKD 316


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,795,056
Number of Sequences: 219361
Number of extensions: 1403765
Number of successful extensions: 3754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3754
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)