Clone Name | rbastl42c07 |
---|---|
Clone Library Name | barley_pub |
>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the complete genome Length = 11901 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 319 gttttttgtcaaaaaaggcct 339 ||||||||||||||||||||| Sbjct: 4932 gttttttgtcaaaaaaggcct 4912
>gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence Length = 39112 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 cgaaatacagtatctcaatcc 280 ||||||||||||||||||||| Sbjct: 5828 cgaaatacagtatctcaatcc 5808
>emb|AL158053.14| Human DNA sequence from clone RP11-156J23 on chromosome Xq21.2-21.33 Contains a discs, large homolog 7 (Drosophila) (DLG7) pseudogene, complete sequence Length = 177722 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 agctgaaagacaagtaacgag 187 ||||||||||||||||||||| Sbjct: 122044 agctgaaagacaagtaacgag 122064
>gb|BC094654.1| Mus musculus component of oligomeric golgi complex 8, mRNA (cDNA clone MGC:101922 IMAGE:6853777), complete cds Length = 4470 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 2009 tatttgcagctttaataaaac 2029
>gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, complete sequence Length = 101116 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 431 tcttcctcttctcatccctct 451 ||||||||||||||||||||| Sbjct: 82774 tcttcctcttctcatccctct 82794
>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence Length = 170801 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 431 tcttcctcttctcatccctct 451 ||||||||||||||||||||| Sbjct: 7996 tcttcctcttctcatccctct 8016
>dbj|AK145515.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0009F13 product:component of oligomeric golgi complex 8, full insert sequence Length = 2059 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 2026 tatttgcagctttaataaaac 2046
>dbj|AK145727.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0034B09 product:component of oligomeric golgi complex 8, full insert sequence Length = 2046 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 2015 tatttgcagctttaataaaac 2035
>dbj|AK153617.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630021O17 product:component of oligomeric golgi complex 8, full insert sequence Length = 2048 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 2017 tatttgcagctttaataaaac 2037
>dbj|AK159569.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420024G11 product:component of oligomeric golgi complex 8, full insert sequence Length = 2045 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 2014 tatttgcagctttaataaaac 2034
>dbj|AK083734.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030073D24 product:BRAIN CDNA, CLONE MNCB-5704, full insert sequence Length = 2046 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 2015 tatttgcagctttaataaaac 2035
>dbj|AK049957.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630033F15 product:hypothetical protein, full insert sequence Length = 2052 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 2021 tatttgcagctttaataaaac 2041
>dbj|AK037823.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130052M04 product:hypothetical protein, full insert sequence Length = 814 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 487 tatttgcagctttaataaaac 467
>ref|NM_139229.3| Mus musculus component of oligomeric golgi complex 8 (Cog8), mRNA Length = 4470 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 2009 tatttgcagctttaataaaac 2029
>gb|AC123868.4| Mus musculus BAC clone RP23-129K6 from 8, complete sequence Length = 174224 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 72902 tatttgcagctttaataaaac 72882
>dbj|AB041610.2| Mus musculus brain Cog8 cDNA, clone MNCb-5704 Length = 2053 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tatttgcagctttaataaaac 50 ||||||||||||||||||||| Sbjct: 1996 tatttgcagctttaataaaac 2016
>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds Length = 987 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 atggaagggagttgggagag 363 |||||||||||||||||||| Sbjct: 98 atggaagggagttgggagag 117
>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence Length = 209579 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 tcttcctcttctcatccctc 450 |||||||||||||||||||| Sbjct: 64584 tcttcctcttctcatccctc 64565
>emb|AL451046.8| Human DNA sequence from clone RP11-174C7 on chromosome 6 Contains a ubiquitin-like 1 (sentrin) (UBL1) pseudogene, a novel pseudogene, a pyridoxal (pyridoxine, vitamin B6) kinase (PDXK) pseudogene and a novel gene, complete sequence Length = 105692 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 aatcctacacggatataaaa 97 |||||||||||||||||||| Sbjct: 91561 aatcctacacggatataaaa 91580
>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10, complete sequence Length = 167771 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 atggaagggagttgggagag 363 |||||||||||||||||||| Sbjct: 2324 atggaagggagttgggagag 2343
>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence Length = 194729 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 tcacatctattcttacacca 316 |||||||||||||||||||| Sbjct: 114772 tcacatctattcttacacca 114791
>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA Length = 987 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 atggaagggagttgggagag 363 |||||||||||||||||||| Sbjct: 98 atggaagggagttgggagag 117
>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381 IMAGE:7410517), complete cds Length = 968 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 atggaagggagttgggagag 363 |||||||||||||||||||| Sbjct: 81 atggaagggagttgggagag 100
>gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete sequence Length = 164051 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 tcttcctcttctcatccctc 450 |||||||||||||||||||| Sbjct: 129969 tcttcctcttctcatccctc 129950
>gb|AC092340.5| Homo sapiens chromosome 16 clone RP11-24M10, complete sequence Length = 146524 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 ttttatttgcagctttaataaaac 50 ||||||||||||||| |||||||| Sbjct: 48160 ttttatttgcagcttaaataaaac 48137
>gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, complete sequence Length = 110512 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 acaaacttcacatctattct 309 |||||||||||||||||||| Sbjct: 22462 acaaacttcacatctattct 22481
>gb|AC079905.28| Homo sapiens 12 BAC RP11-813P10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189456 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 cagctttaataaaacacaaa 55 |||||||||||||||||||| Sbjct: 16622 cagctttaataaaacacaaa 16641
>gb|AC009142.13| Homo sapiens chromosome 16 clone RP11-543N12, complete sequence Length = 195848 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ttttatttgcagctttaataaaac 50 ||||||||||||||| |||||||| Sbjct: 10061 ttttatttgcagcttaaataaaac 10084 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,792,566 Number of Sequences: 3902068 Number of extensions: 4792566 Number of successful extensions: 92939 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92891 Number of HSP's gapped (non-prelim): 48 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)