ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 385 e-104
2gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 347 2e-92
3emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 119 7e-24
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
5dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
6dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
7emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 119 7e-24
8emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for pu... 117 3e-23
9emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for pu... 117 3e-23
10emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic tr... 109 7e-21
11gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence 56 9e-05
12gb|AY110434.1| Zea mays CL533_2 mRNA sequence 52 0.001
13gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete se... 46 0.089
14gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete s... 46 0.089
15emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 i... 44 0.35
16emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5... 44 0.35
17gb|AY109824.1| Zea mays CL533_1 mRNA sequence 44 0.35
18emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 ... 42 1.4
19emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chr... 42 1.4
20gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, compl... 42 1.4
21gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N... 42 1.4
22gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosom... 40 5.5
23gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 5.5
24gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome... 40 5.5
25gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome... 40 5.5
26gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's ... 40 5.5
27emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chr... 40 5.5
28gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's... 40 5.5
29emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chr... 40 5.5
30emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo... 40 5.5
31emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in... 40 5.5
32emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 40 5.5
33emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 ... 40 5.5
34gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, co... 40 5.5
35dbj|AK135378.1| Mus musculus 12 days embryo female mullerian duc... 40 5.5
36dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 5.5
37gb|AC151548.3| Macropus eugenii clone ME_KBa-603H10, complete se... 40 5.5
38gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, ... 40 5.5
39dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 5.5
40emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chro... 40 5.5
41emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, ... 40 5.5
42gb|AC145041.3| Macropus eugenii clone ME_KBa-210M21, complete se... 40 5.5
43emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in ... 40 5.5
44emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in ... 40 5.5
45emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 i... 40 5.5
46emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in ... 40 5.5
47emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on ch... 40 5.5
48emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-9... 40 5.5
49gb|AC163101.9| Mus musculus chromosome 18, clone RP24-177G6, com... 40 5.5
50gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, c... 40 5.5
51gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete... 40 5.5
52emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in... 40 5.5
53gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, compl... 40 5.5 
>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA,
            complete cds
          Length = 2887

 Score =  385 bits (194), Expect = e-104
 Identities = 209/214 (97%)
 Strand = Plus / Minus

                                                                        
Query: 199  gccttgttcattcccaggctccagcaagagttaggccgccgtcgccgagagaccaaaatc 258
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2696 gccttgttcattcccaggctccagcgagagttaggccgccgtcgccgagagaccaaaatc 2637

                                                                        
Query: 259  catggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatata 318
            |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 2636 catggcttcttcctttcctcgaaacaataatcaacactcatgtgacctcgcaaaaatata 2577

                                                                        
Query: 319  cagctcaaaactggctgttgctcacatcccagttcctctgcggtgaaacacctaagctat 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2576 cagctcaaaactggctgttgctcacatcccagttcctctgcggtgaaacacctaagctat 2517

                                              
Query: 379  agagaatacaccatacgctgcctttcactagaca 412
            ||||||||||||||||||||  ||||||||||||
Sbjct: 2516 agagaatacaccatacgctgtttttcactagaca 2483



 Score =  295 bits (149), Expect = 6e-77
 Identities = 152/153 (99%)
 Strand = Plus / Minus

                                                                        
Query: 26   aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 85
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 2803

                                                                        
Query: 86   cagaatactccaaaaccacagtacattgttacaaattgggtaagaactgaaaagaaataa 145
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2802 cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 2743

                                             
Query: 146  taacattggaggagacacaaaaacatcccattt 178
            |||||||||||||||||||||||||||||||||
Sbjct: 2742 taacattggaggagacacaaaaacatcccattt 2710
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>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
            sequence
          Length = 2863

 Score =  347 bits (175), Expect = 2e-92
 Identities = 207/215 (96%), Gaps = 2/215 (0%)
 Strand = Plus / Minus

                                                                        
Query: 199  gccttgttcattcccaggctccagcaagagttaggccgccgtcgcc-gagagaccaaaat 257
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 2693 gccttgttcattcccaggctccagcaagagttaggccgccgtcgccagagagaccaaa-t 2635

                                                                        
Query: 258  ccatggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatat 317
            |||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 2634 ccatggcttctttctgtcctcgaaacaataatcaacactcatgtgacctcgcaaaaatat 2575

                                                                        
Query: 318  acagctcaaaactggctgttgctcacatcccagttcctctgcggtgaaacacctaagcta 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 acagctcaaaactggctgttgctcacatcccagttcctctgcggtgaaacacctaagcta 2515

                                               
Query: 378  tagagaatacaccatacgctgcctttcactagaca 412
            |||||||||||||||||||||  ||||||||||||
Sbjct: 2514 tagagaatacaccatacgctgattttcactagaca 2480



 Score =  301 bits (152), Expect = 9e-79
 Identities = 158/160 (98%)
 Strand = Plus / Minus

                                                                        
Query: 21   aagccaaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgta 80
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 aagccaaaatgatcttagattcagttttcgactcctacaatgctgacacgatatattgta 2804

                                                                        
Query: 81   accgacagaatactccaaaaccacagtacattgttacaaattgggtaagaactgaaaaga 140
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2803 accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 2744

                                                    
Query: 141  aataataacattggaggagacacaaaaacatcccatttga 180
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aataataacattggaggagacacaaaaacatcccatttga 2704
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score =  119 bits (60), Expect = 7e-24
 Identities = 129/154 (83%), Gaps = 16/154 (10%)
 Strand = Plus / Plus

                                                                         
Query: 252   caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 304
             |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 42261 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 42320

                                                                         
Query: 305   ctcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcct 355
             || ||||||||||||||| ||||||||||||||||||||||| |         |||||||
Sbjct: 42321 cttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcct 42380

                                               
Query: 356   ctgcggtgaaacacctaagctatagagaatacac 389
             ||| ||||||||||||||||||||||||||||||
Sbjct: 42381 ctggggtgaaacacctaagctatagagaatacac 42414



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 64    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 122
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 42105 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 42164

                                       
Query: 123   gggtaagaactgaaaagaaataataa 148
             | ||| | || |||||||| ||||||
Sbjct: 42165 gtgtacgcacagaaaagaactaataa 42190
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  119 bits (60), Expect = 7e-24
 Identities = 129/154 (83%), Gaps = 16/154 (10%)
 Strand = Plus / Plus

                                                                            
Query: 252      caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 304
                |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 24921676 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 24921735

                                                                            
Query: 305      ctcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcct 355
                || ||||||||||||||| ||||||||||||||||||||||| |         |||||||
Sbjct: 24921736 cttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcct 24921795

                                                  
Query: 356      ctgcggtgaaacacctaagctatagagaatacac 389
                ||| ||||||||||||||||||||||||||||||
Sbjct: 24921796 ctggggtgaaacacctaagctatagagaatacac 24921829



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                            
Query: 64       tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 122
                |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 24921520 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 24921579

                                          
Query: 123      gggtaagaactgaaaagaaataataa 148
                | ||| | || |||||||| ||||||
Sbjct: 24921580 gtgtacgcacagaaaagaactaataa 24921605
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>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full
            insert sequence
          Length = 2907

 Score =  119 bits (60), Expect = 7e-24
 Identities = 129/154 (83%), Gaps = 16/154 (10%)
 Strand = Plus / Minus

                                                                        
Query: 252  caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 304
            |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 2639 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 2580

                                                                        
Query: 305  ctcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcct 355
            || ||||||||||||||| ||||||||||||||||||||||| |         |||||||
Sbjct: 2579 cttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcct 2520

                                              
Query: 356  ctgcggtgaaacacctaagctatagagaatacac 389
            ||| ||||||||||||||||||||||||||||||
Sbjct: 2519 ctggggtgaaacacctaagctatagagaatacac 2486



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 64   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 122
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 2795 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 2736

                                      
Query: 123  gggtaagaactgaaaagaaataataa 148
            | ||| | || |||||||| ||||||
Sbjct: 2735 gtgtacgcacagaaaagaactaataa 2710
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>dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A02, full
            insert sequence
          Length = 1712

 Score =  119 bits (60), Expect = 7e-24
 Identities = 129/154 (83%), Gaps = 16/154 (10%)
 Strand = Plus / Minus

                                                                        
Query: 252  caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 304
            |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 1545 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 1486

                                                                        
Query: 305  ctcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcct 355
            || ||||||||||||||| ||||||||||||||||||||||| |         |||||||
Sbjct: 1485 cttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcct 1426

                                              
Query: 356  ctgcggtgaaacacctaagctatagagaatacac 389
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1425 ctggggtgaaacacctaagctatagagaatacac 1392



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 64   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 122
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1701 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 1642

                                      
Query: 123  gggtaagaactgaaaagaaataataa 148
            | ||| | || |||||||| ||||||
Sbjct: 1641 gtgtacgcacagaaaagaactaataa 1616
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score =  119 bits (60), Expect = 7e-24
 Identities = 129/154 (83%), Gaps = 16/154 (10%)
 Strand = Plus / Plus

                                                                         
Query: 252   caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 304
             |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 49790 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 49849

                                                                         
Query: 305   ctcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcct 355
             || ||||||||||||||| ||||||||||||||||||||||| |         |||||||
Sbjct: 49850 cttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcct 49909

                                               
Query: 356   ctgcggtgaaacacctaagctatagagaatacac 389
             ||| ||||||||||||||||||||||||||||||
Sbjct: 49910 ctggggtgaaacacctaagctatagagaatacac 49943



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 64    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 122
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 49634 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 49693

                                       
Query: 123   gggtaagaactgaaaagaaataataa 148
             | ||| | || |||||||| ||||||
Sbjct: 49694 gtgtacgcacagaaaagaactaataa 49719
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>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar Gigante
          Length = 2599

 Score =  117 bits (59), Expect = 3e-23
 Identities = 103/119 (86%), Gaps = 9/119 (7%)
 Strand = Plus / Minus

                                                                        
Query: 280  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 339
            |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2572 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2513

                                                                       
Query: 340  tcacatccc---------agttcctctgcggtgaaacacctaagctatagagaatacac 389
            ||||||| |         |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2512 tcacatctccagtacgagagttcctctggggtgaaacacctaagctatagagaatacac 2454
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>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar IR64
          Length = 2599

 Score =  117 bits (59), Expect = 3e-23
 Identities = 128/153 (83%), Gaps = 16/153 (10%)
 Strand = Plus / Minus

                                                                        
Query: 253  aaaatccatggcttcttcctttcc-------tccaaacaataatcaacactcatgtaacc 305
            ||||||||||||||||| ||||||       || |||||||||| ||||||||| | |||
Sbjct: 2599 aaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgacc 2540

                                                                        
Query: 306  tcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcctc 356
            | ||||||||||||||| ||||||||||||||||||||||| |         ||||||||
Sbjct: 2539 ttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcctc 2480

                                             
Query: 357  tgcggtgaaacacctaagctatagagaatacac 389
            || ||||||||||||||||||||||||||||||
Sbjct: 2479 tggggtgaaacacctaagctatagagaatacac 2447
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>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation
            factor 4 gamma (eif(iso)4g gene), cultivar Tog5681
          Length = 2699

 Score =  109 bits (55), Expect = 7e-21
 Identities = 102/119 (85%), Gaps = 9/119 (7%)
 Strand = Plus / Minus

                                                                        
Query: 280  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 339
            |||||||||  ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2666 aaacaataacgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2607

                                                                       
Query: 340  tcacatccc---------agttcctctgcggtgaaacacctaagctatagagaatacac 389
            ||||||| |         |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2606 tcacatctccagtacgagagttcctctggggtgaaacacctaagctatagagaatacac 2548
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>gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence
          Length = 249

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 291 aacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgctcacatc 346
           ||||||||| | | ||||||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 132 aacactcatctgatctcgcaaaattatacagcccaaaactggctgttcctcgcatc 187



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 253 aaaatccatggcttcttcctttcc 276
           ||||||||||||||||| ||||||
Sbjct: 74  aaaatccatggcttctttctttcc 97
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>gb|AY110434.1| Zea mays CL533_2 mRNA sequence
          Length = 843

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 305 ctcgcaaaaatatacagctcaaaactggctgttgctcacatc 346
           ||||||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 600 ctcgcaaaattatacagcccaaaactggctgttcctcgcatc 559



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 253 aaaatccatggcttcttcctttcc 276
           ||||||||||||||||| ||||||
Sbjct: 672 aaaatccatggcttctttctttcc 649
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>gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete sequence
          Length = 92346

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 163   caaaaacatcccatttgacagaagaag 189
             |||||||||||||||||| ||||||||
Sbjct: 45816 caaaaacatcccatttgagagaagaag 45842
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>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence
          Length = 105045

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 163   caaaaacatcccatttgacagaagaag 189
             |||||||||||||||||| ||||||||
Sbjct: 28363 caaaaacatcccatttgagagaagaag 28337
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>emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 in linkage group 8,
             complete sequence
          Length = 150519

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 27    aaataatcttagattcagtttt 48
             ||||||||||||||||||||||
Sbjct: 27178 aaataatcttagattcagtttt 27199
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>emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5 on chromosome X, complete
            sequence
          Length = 39550

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 127  aagaactgaaaagaaataataacatt 152
            |||| |||||||||||||||||||||
Sbjct: 3229 aagagctgaaaagaaataataacatt 3204
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>gb|AY109824.1| Zea mays CL533_1 mRNA sequence
          Length = 2894

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 305  ctcgcaaaaatatacagctcaaaactggctgttgctca 342
            ||||||||| |||||||||||||| || ||||| ||||
Sbjct: 2656 ctcgcaaaattatacagctcaaaattgtctgttcctca 2619
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>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 55     ctacaatgctgacacgatatattgt 79
              |||||||||||| ||||||||||||
Sbjct: 122731 ctacaatgctgaaacgatatattgt 122707
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>emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chromosome 13q21.33-22.3
             Contains a signal sequence receptor, alpha
             (translocon-associated protein alpha) (SSR1) pseudogene,
             complete sequence
          Length = 151603

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   tcccaggctccagcaagagtt 230
             |||||||||||||||||||||
Sbjct: 87107 tcccaggctccagcaagagtt 87087
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>gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, complete sequence
          Length = 67124

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 210  tcccaggctccagcaagagtt 230
            |||||||||||||||||||||
Sbjct: 3598 tcccaggctccagcaagagtt 3618
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>gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N11, complete sequence
          Length = 83029

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   tcccaggctccagcaagagtt 230
             |||||||||||||||||||||
Sbjct: 34025 tcccaggctccagcaagagtt 34005
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>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   gaaaagaaataataacattg 153
             ||||||||||||||||||||
Sbjct: 39323 gaaaagaaataataacattg 39342
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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 337     tgctcacatcccagttcctc 356
               ||||||||||||||||||||
Sbjct: 1171605 tgctcacatcccagttcctc 1171586
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>gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome 13, complete sequence
          Length = 205869

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   ccatggcttcttcctttcct 277
             ||||||||||||||||||||
Sbjct: 31484 ccatggcttcttcctttcct 31503
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>gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome 18, complete sequence
          Length = 190023

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   cccaggctccagcaagagtt 230
             ||||||||||||||||||||
Sbjct: 97827 cccaggctccagcaagagtt 97808
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>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 170859

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   tgaaaagaaataataacatt 152
             ||||||||||||||||||||
Sbjct: 30825 tgaaaagaaataataacatt 30844
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>emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chromosome 9 Contains a
             novel pseudogene, complete sequence
          Length = 110443

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   caaaaatatacagctcaaaa 328
             ||||||||||||||||||||
Sbjct: 35208 caaaaatatacagctcaaaa 35189
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>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   tgaaaagaaataataacatt 152
             ||||||||||||||||||||
Sbjct: 41625 tgaaaagaaataataacatt 41606
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>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the
             Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes
             and two CpG islands, complete sequence
          Length = 187709

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   ttcattcccaggctccagca 224
             ||||||||||||||||||||
Sbjct: 35935 ttcattcccaggctccagca 35916
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>emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo-8-phosphate synthase, exons
           1-4
          Length = 1812

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 taagaactgaaaagaaataa 145
           ||||||||||||||||||||
Sbjct: 639 taagaactgaaaagaaataa 620
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>emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in linkage group 24,
             complete sequence
          Length = 152666

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    atgctgacacgatatattgt 79
             ||||||||||||||||||||
Sbjct: 54458 atgctgacacgatatattgt 54439
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>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     atgctgacacgatatattgt 79
              ||||||||||||||||||||
Sbjct: 198757 atgctgacacgatatattgt 198776
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>emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 in linkage group 20,
             complete sequence
          Length = 86384

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   tgaaaagaaataataacatt 152
             ||||||||||||||||||||
Sbjct: 84744 tgaaaagaaataataacatt 84763
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>gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   ttgttcattcccaggctcca 221
             ||||||||||||||||||||
Sbjct: 70836 ttgttcattcccaggctcca 70817
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>dbj|AK135378.1| Mus musculus 12 days embryo female mullerian duct includes
            surrounding region cDNA, RIKEN full-length enriched
            library, clone:6820409O14 product:unclassifiable, full
            insert sequence
          Length = 3242

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 319  cagctcaaaactggctgttg 338
            ||||||||||||||||||||
Sbjct: 2547 cagctcaaaactggctgttg 2566
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>dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130097D18
           product:unclassifiable, full insert sequence
          Length = 719

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 cccaggctccagcaagagtt 230
           ||||||||||||||||||||
Sbjct: 28  cccaggctccagcaagagtt 9
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>gb|AC151548.3| Macropus eugenii clone ME_KBa-603H10, complete sequence
          Length = 111549

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    tgctcacatcccagttcctc 356
              ||||||||||||||||||||
Sbjct: 108918 tgctcacatcccagttcctc 108899
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>gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, complete sequence
          Length = 62355

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    aagccaaaataatcttagat 40
             ||||||||||||||||||||
Sbjct: 14713 aagccaaaataatcttagat 14732
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 126    taagaactgaaaagaaataataac 149
              |||||||| |||||||||||||||
Sbjct: 183747 taagaacttaaaagaaataataac 183724
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>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   gaaaagaaataataacattg 153
             ||||||||||||||||||||
Sbjct: 65829 gaaaagaaataataacattg 65810
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>emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, complete sequence
          Length = 145569

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    atgctgacacgatatattgt 79
             ||||||||||||||||||||
Sbjct: 50947 atgctgacacgatatattgt 50928
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>gb|AC145041.3| Macropus eugenii clone ME_KBa-210M21, complete sequence
          Length = 137667

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  tgctcacatcccagttcctc 356
            ||||||||||||||||||||
Sbjct: 1230 tgctcacatcccagttcctc 1211
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>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
             complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    atgctgacacgatatattgt 79
             ||||||||||||||||||||
Sbjct: 46843 atgctgacacgatatattgt 46824
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>emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in linkage group 20,
           complete sequence
          Length = 9831

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 tgaaaagaaataataacatt 152
           ||||||||||||||||||||
Sbjct: 360 tgaaaagaaataataacatt 379
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>emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 in linkage group 20,
             complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    atgctgacacgatatattgt 79
             ||||||||||||||||||||
Sbjct: 78894 atgctgacacgatatattgt 78875
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>emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in linkage group 20,
             complete sequence
          Length = 209360

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    atgctgacacgatatattgt 79
             ||||||||||||||||||||
Sbjct: 38990 atgctgacacgatatattgt 38971
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>emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete
              sequence
          Length = 203311

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    gctcaaaactggctgttgct 340
              ||||||||||||||||||||
Sbjct: 133196 gctcaaaactggctgttgct 133215
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>emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-99L13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178433

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 146   taacattggaggagacacaaaaac 169
             ||||||||||||||||||| ||||
Sbjct: 93093 taacattggaggagacacataaac 93116
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>gb|AC163101.9| Mus musculus chromosome 18, clone RP24-177G6, complete sequence
          Length = 154555

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 319    cagctcaaaactggctgttg 338
              ||||||||||||||||||||
Sbjct: 125944 cagctcaaaactggctgttg 125963
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>gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, complete sequence
          Length = 242449

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   cagctcaaaactggctgttg 338
             ||||||||||||||||||||
Sbjct: 68402 cagctcaaaactggctgttg 68421
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>gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete sequence
          Length = 136080

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   ttcccaggctccagcaagag 228
             ||||||||||||||||||||
Sbjct: 42008 ttcccaggctccagcaagag 41989
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>emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in linkage group 1,
              complete sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     atgctgacacgatatattgt 79
              ||||||||||||||||||||
Sbjct: 135077 atgctgacacgatatattgt 135096
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>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  gaaaagaaataataacattg 153
            ||||||||||||||||||||
Sbjct: 7379 gaaaagaaataataacattg 7360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,494,475
Number of Sequences: 3902068
Number of extensions: 4494475
Number of successful extensions: 98554
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98375
Number of HSP's gapped (non-prelim): 173
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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