ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl42c04 |
|---|---|
| Clone Library Name | barley_pub |
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +1 Query: 4 QMPVHRPKQQGNDGHNARKHTNNTVIHIRHLHSMVLPRPDKNTPQQATVT 153 Q P H P Q + N H +++ +H H P P +T QA V+ Sbjct: 295 QHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPLHTGNQAQVS 344
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +1 Query: 4 QMPVHRPKQQGNDGHNARKHTNNTVIHIRHLHSMVLPRPDKNTPQQATVT 153 Q P H P Q + N H +++ +H H P P +T QA V+ Sbjct: 140 QHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPLHTGNQAQVS 189
>TR150_XENLA (Q5BJ39) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 30.0 bits (66), Expect = 3.4 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = -2 Query: 449 SGSTRQTLRCERKLQERSYCQSRITSRCPKQAEGEPQLAQEDPDRKEKGCHNKTKGGPEC 270 SGS R + + RS+ +SR SR ++ + +L+ R HN+ + P Sbjct: 9 SGSRSSRSRSASRSRSRSFSKSRSRSRSVSRSR-KRRLSSRSRSRSYSPAHNRERNHPRV 67 Query: 269 LANRD 255 NRD Sbjct: 68 YQNRD 72
>TR150_RAT (Q5M7V8) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 30.0 bits (66), Expect = 3.4 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = -2 Query: 449 SGSTRQTLRCERKLQERSYCQSRITSRCPKQAEGEPQLAQEDPDRKEKGCHNKTKGGPEC 270 SGS R + + RS+ +SR SR ++ + +L+ R HN+ + P Sbjct: 9 SGSRSSRSRSASRSRSRSFSKSRSRSRSVSRSR-KRRLSSRSRSRSYSPAHNRERNHPRV 67 Query: 269 LANRD 255 NRD Sbjct: 68 YQNRD 72
>TR150_MOUSE (Q569Z6) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 30.0 bits (66), Expect = 3.4 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = -2 Query: 449 SGSTRQTLRCERKLQERSYCQSRITSRCPKQAEGEPQLAQEDPDRKEKGCHNKTKGGPEC 270 SGS R + + RS+ +SR SR ++ + +L+ R HN+ + P Sbjct: 9 SGSRSSRSRSASRSRSRSFSKSRSRSRSVSRSR-KRRLSSRSRSRSYSPAHNRERNHPRV 67 Query: 269 LANRD 255 NRD Sbjct: 68 YQNRD 72
>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 955 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = -2 Query: 449 SGSTRQTLRCERKLQERSYCQSRITSRCPKQAEGEPQLAQEDPDRKEKGCHNKTKGGPEC 270 SGS R + + RS+ +SR SR ++ + +L+ R HN+ + P Sbjct: 9 SGSRSSRSRSASRSRSRSFSKSRSRSRSLSRSR-KRRLSSRSRSRSYSPAHNRERNHPRV 67 Query: 269 LANRD 255 NRD Sbjct: 68 YQNRD 72
>POLG_BVDVS (Q01499) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3898 Score = 29.6 bits (65), Expect = 4.4 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -2 Query: 443 STRQTLRCERKLQERSYCQSRITSRCPKQAEGEPQLAQEDPDRKEKG 303 +TR R R + R C +TS + EG + Q+ PDR EKG Sbjct: 144 ATRSHQRVLRWVHNRLDCPLWVTSCSDTKEEGATKKKQQKPDRLEKG 190
>C8AP2_HUMAN (Q9UKL3) CASP8-associated protein 2 (FLICE-associated huge protein)| Length = 1982 Score = 29.3 bits (64), Expect = 5.8 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Frame = -3 Query: 418 SGSCKKEATAKAVSLAVVPSKQK---GNPNLLKRILTGRRRDAIIKPKVVLSA*LTETRV 248 SG C E++ + ++A VPS + G + + + G + +++PKV L A +TE R+ Sbjct: 589 SGVCDSESSMQVKTVAYVPSISEHILGEAAVSEHTM-GETKSTLLEPKVALLA-VTEPRI 646 Query: 247 TLSMIN 230 +S N Sbjct: 647 GISETN 652
>TTL11_HUMAN (Q8NHH1) Tubulin--tyrosine ligase-like protein 11| Length = 538 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -3 Query: 469 VLSHPTPVVPPAKPYDVSGSC 407 VL P P +PP+KP V G C Sbjct: 170 VLQRPPPTLPPSKPKPVQGLC 190
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 28.9 bits (63), Expect = 7.6 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Frame = +1 Query: 4 QMPVHRPKQQGNDGH-NARKHTNNTVIHIRHLHSMVLPRPDKNTPQQATVTHGSS*T*QE 180 Q H + QG G + + H N +H +H H P+ + T QQ H + Q Sbjct: 1897 QQAQHVQQPQGLQGQRHGQVHGNGQQLHQQHQHQQQQPQQAQQTQQQRQQVHPAPQLPQA 1956 Query: 181 HPQQ 192 P Q Sbjct: 1957 QPPQ 1960
>LIPA_BURPS (Q9EYP3) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 329 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -3 Query: 457 PTPVVPPAKPYDVSGSCKKEATAKAVSLAVVPSKQKGNPNLLK-RILTGRRRDAIIK 290 P P P A YD + K +A + + +VP ++ P ++ + TG R IK Sbjct: 8 PAPAEPAASAYDPTAKQKAQAKTARIPIKIVPIEKLKKPEWIRVKAATGSSRFNEIK 64 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,729,537 Number of Sequences: 219361 Number of extensions: 1380905 Number of successful extensions: 3780 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3672 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3779 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
