ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 44 2e-04
2MTAL1_KLULA (Q08398) Mating-type protein ALPHA1 (Transcription a... 30 2.5
3FREM1_HUMAN (Q5H8C1) FRAS1-related extracellular matrix protein ... 30 3.2
4SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precur... 30 4.2
5LEG12_MOUSE (Q91VD1) Galectin-12 29 7.2
6PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5) 28 9.4
7PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5) 28 9.4
8PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.... 28 9.4
9LGT_MANSM (Q65VJ7) Prolipoprotein diacylglyceryl transferase (EC... 28 9.4
10SPG16_MOUSE (Q8K450) Sperm-associated antigen 16 protein (PF20 p... 28 9.4

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = -3

Query: 474 ANPAGQAILSSHAAVVEACNSLLI 403
           A+PAGQAILSSHAAVV+ACNSL I
Sbjct: 765 ADPAGQAILSSHAAVVDACNSLSI 788



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>MTAL1_KLULA (Q08398) Mating-type protein ALPHA1 (Transcription activator|
           Alpha1p) (MATalpha1 protein)
          Length = 261

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 230 LQTIINTHVTSQKYTAQNWLLLTSQFLCGETPK 328
           L TII+ H T  K T +NW L+  ++ C  + K
Sbjct: 129 LSTIISKHWTVDKQTRKNWELIAQEYNCDASGK 161



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>FREM1_HUMAN (Q5H8C1) FRAS1-related extracellular matrix protein 1 precursor|
            (QBRICK protein)
          Length = 2179

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 285  GCCSH-PSSSAVKHLSYREY--TIRCLSLDTAPEKLS-WPRAVISRGCCTLRLRQHVSSI 452
            GCC + P+ S   H S+  Y   I    +D  P  ++  P  V+  GC T     H+S+ 
Sbjct: 992  GCCYNGPNPSVPLHASFPVYDLNITVYPVDNQPPSIAIGPVFVVDEGCSTALTVNHLSAT 1051

Query: 453  WPD 461
             PD
Sbjct: 1052 DPD 1054



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>SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precursor (EC|
           3.2.1.-) (Soluble cell wall protein 11)
          Length = 542

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 169 GSSKS*AAVAERPKSMASSFPPNNNQHSCNLAKIYSSKLAV 291
           GSS S AA+   PK++A  + P N+  SC  A   SS L +
Sbjct: 269 GSSSSSAAITSSPKAIA--YSPYNDDGSCKSADAVSSDLTL 307



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>LEG12_MOUSE (Q91VD1) Galectin-12|
          Length = 314

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
 Frame = +3

Query: 261 RKNIQLKTGCCSHPSSSAVKHLSYREYTIRCLSLDTA------PEKLSWPRAVISRG 413
           R  +  + GCC HP        S R YT++   +          +++ WP   + RG
Sbjct: 53  RFQVDFQCGCCLHPQPDVAFRFSPRFYTVKPHVICNTHQGGLWQKEIRWPGVALQRG 109



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>PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = -2

Query: 292 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFSSSVK 128
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++ + ++
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYLNGIE 461



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>PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = -2

Query: 292 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFSSSVK 128
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++ + ++
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYLNGIE 461



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>PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.5) (PCL1)|
          Length = 505

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = -2

Query: 292 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFSSSVK 128
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++ + ++
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYLNGIE 461



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>LGT_MANSM (Q65VJ7) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 268

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
 Frame = -2

Query: 214 WILVSRRRRPNSCWSLGMNKAFFFSSSV--------------KWDVFVSPPMLLF 92
           W+ V R  RP+S W++       F+                 +WD+FV  P  LF
Sbjct: 39  WLAVKRANRPDSGWTVEQVDNLLFNGFAGVFLGGRIGYVLFYQWDLFVQEPSYLF 93



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>SPG16_MOUSE (Q8K450) Sperm-associated antigen 16 protein (PF20 protein homolog)|
          Length = 639

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 282 TGCCSHPSSSAVKHLSYREYTIRCLSLDTAPEKLSWPRAVISRGCCTLRLRQHVSSIW 455
           +GCC HPS S +   S  + TI+   L              ++G CTL L  H  ++W
Sbjct: 406 SGCCFHPSGSKLA-TSSGDSTIKLWDL--------------NKGECTLTLEGHNHAVW 448


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,650,435
Number of Sequences: 219361
Number of extensions: 1420545
Number of successful extensions: 3959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3958
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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