ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA... 133 2e-32
2DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA... 133 2e-32
3DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged D... 130 2e-30
4DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged D... 125 4e-29
5DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specifi... 80 3e-15
6DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specifi... 80 3e-15
7DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specifi... 50 2e-06
8CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity fa... 39 0.005
9RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing ... 36 0.043
10RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1 36 0.057
11RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1 35 0.13
12IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma) 32 0.82
13YB3C_SCHPO (O14342) Hypothetical protein C2F12.12c in chromosome II 32 0.82
14IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma) 32 0.82
15Y109_NPVOP (O10348) Hypothetical 44.3 kDa protein (ORF109) 32 0.82
16PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer ... 32 1.1
17SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124) 32 1.1
18SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inosit... 31 1.4
19SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125) 31 1.4
20CUC3A_HAECO (P16253) Cuticle collagen 3A3 31 1.4
21EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS) 31 1.8
22CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor 31 1.8
23SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dep... 31 1.8
24M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinas... 30 2.4
25M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kin... 30 2.4
26DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire) 30 2.4
27CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation speci... 30 2.4
28NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytopl... 30 3.1
29TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Ta... 30 3.1
30CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor 30 3.1
31ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disinteg... 30 4.1
32SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Tra... 30 4.1
33BRD2_HUMAN (P25440) Bromodomain-containing protein 2 (RING3 prot... 30 4.1
34RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type r... 30 4.1
35SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Tra... 30 4.1
36COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemph... 29 5.3
37COL13_CAEEL (P20631) Cuticle collagen 13 precursor 29 5.3
38COL12_CAEEL (P20630) Cuticle collagen 12 precursor 29 5.3
39YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5 29 5.3
40COL40_CAEEL (P34804) Cuticle collagen 40 29 5.3
41EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (... 29 5.3
42COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor 29 5.3
43APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein... 29 5.3
44SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dep... 29 5.3
45PERT_BORBR (Q03035) Pertactin precursor (P.94) [Contains: Outer ... 29 5.3
46COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragm... 29 5.3
47CBPA_DICDI (P35085) Calcium-binding protein 29 5.3
48CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor 29 5.3
49SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos... 29 6.9
50SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos... 29 6.9
51DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re... 29 6.9
52ZN687_HUMAN (Q8N1G0) Zinc finger protein 687 29 6.9
53CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long... 29 6.9
54BRO1_YEAST (P48582) Vacuolar sorting protein BRO1 (BRO domain-co... 28 9.1
55SY121_ARATH (Q9ZSD4) Syntaxin-121 (AtSYP121) (Syntaxin-related p... 28 9.1
56G168_PARPR (P17053) G surface protein, allelic form 168 precursor 28 9.1
57CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1) 28 9.1
58CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor 28 9.1
59CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor 28 9.1
60CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor 28 9.1
61CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor 28 9.1
62SOX17_HUMAN (Q9H6I2) Transcription factor SOX-17 28 9.1
63YHY2_YEAST (P38870) Hypothetical 90.1 kDa protein in OYE2-GND1 i... 28 9.1
64NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 pr... 28 9.1
65CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor 28 9.1
66CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor 28 9.1

>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein|
            1)
          Length = 1095

 Score =  133 bits (334), Expect(2) = 2e-32
 Identities = 64/81 (79%), Positives = 74/81 (91%)
 Frame = -1

Query: 435  FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVA 256
            FLEKLQ  L K IKGVG LSHEQWRSF+N+KKT +A+NFLDGDLIESFLDL+R++MEE++
Sbjct: 1015 FLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEIS 1074

Query: 255  KAMAVPVEELSKRVEELTRLH 193
            KAM+VPVEEL KRVEELTRLH
Sbjct: 1075 KAMSVPVEELMKRVEELTRLH 1095



 Score = 25.0 bits (53), Expect(2) = 2e-32
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 470  GIIASLPHDHY 438
            G+IASLPHD Y
Sbjct: 1003 GVIASLPHDQY 1013



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>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein|
            1) (High pigmentation protein 1)
          Length = 1090

 Score =  133 bits (334), Expect(2) = 2e-32
 Identities = 64/81 (79%), Positives = 74/81 (91%)
 Frame = -1

Query: 435  FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVA 256
            FLEKLQ  L K IKGVG LSHEQWRSF+N+KKT +A+NFLDGDLIESFLDL+R++MEE++
Sbjct: 1010 FLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEIS 1069

Query: 255  KAMAVPVEELSKRVEELTRLH 193
            KAM+VPVEEL KRVEELTRLH
Sbjct: 1070 KAMSVPVEELMKRVEELTRLH 1090



 Score = 25.0 bits (53), Expect(2) = 2e-32
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 470  GIIASLPHDHY 438
            G+IASLPHD Y
Sbjct: 998  GVIASLPHDQY 1008



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>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding|
            protein 1a) (DDB1a)
          Length = 1088

 Score =  130 bits (327), Expect = 2e-30
 Identities = 63/81 (77%), Positives = 75/81 (92%)
 Frame = -1

Query: 435  FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVA 256
            FLEKLQ++L K IKGVG LSHEQWRSF+N+K+T+EARNFLDGDLIESFLDL+R+KME+++
Sbjct: 1008 FLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDIS 1067

Query: 255  KAMAVPVEELSKRVEELTRLH 193
            K+M V VEEL KRVEELTRLH
Sbjct: 1068 KSMNVQVEELCKRVEELTRLH 1088



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>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding|
            protein 1b) (DDB1b)
          Length = 1088

 Score =  125 bits (315), Expect = 4e-29
 Identities = 61/81 (75%), Positives = 71/81 (87%)
 Frame = -1

Query: 435  FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVA 256
            FLEKLQ +L K IKGVG LSHEQWRSF+N+K+T+EA+ +LDGDLIESFLDL+R KMEE++
Sbjct: 1008 FLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEIS 1067

Query: 255  KAMAVPVEELSKRVEELTRLH 193
            K M V VEEL KRVEELTRLH
Sbjct: 1068 KGMDVQVEELCKRVEELTRLH 1088



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>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding|
            protein 1) (UV-damaged DNA-binding factor) (DDB p127
            subunit) (DDBa) (UV-damaged DNA-binding protein 1)
            (UV-DDB 1) (Xeroderma pigmentosum group E-complementing
            protein) (XPCe)
          Length = 1140

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 12/94 (12%)
 Frame = -1

Query: 438  WF--LEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKME 265
            W+  L  +Q  L K IK VG + H  WRSFH ++KT  A  F+DGDLIESFLD++R KM+
Sbjct: 1047 WYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQ 1106

Query: 264  EVAKAM----------AVPVEELSKRVEELTRLH 193
            EV   +              ++L K VEELTR+H
Sbjct: 1107 EVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140



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>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding|
            protein 1) (DDB p127 subunit) (DDBa) (UV-damaged
            DNA-binding protein 1) (UV-DDB 1)
          Length = 1140

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 12/94 (12%)
 Frame = -1

Query: 438  WF--LEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKME 265
            W+  L  +Q  L K IK VG + H  WRSFH ++KT  A  F+DGDLIESFLD++R KM+
Sbjct: 1047 WYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQ 1106

Query: 264  EVAKAM----------AVPVEELSKRVEELTRLH 193
            EV   +              ++L K VEELTR+H
Sbjct: 1107 EVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140



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>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding|
            protein 1)
          Length = 1072

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
 Frame = -1

Query: 432  LEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAK 253
            L +LQ  + K I   G LSH++W+ +  + +TS + + +DG LIES L L    + E+  
Sbjct: 987  LLQLQDNIRKVIPSFGGLSHKEWKEYRGENETSPS-DLIDGSLIESILGLREPILNEIVN 1045

Query: 252  A------MAVPVEELSKRVEELTRLH 193
                   + + V++L   +E L +LH
Sbjct: 1046 GGHEGTKLDISVQDLKSIIENLEKLH 1071



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>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa|
            subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF)
          Length = 1455

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
 Frame = -1

Query: 459  LPAPRPLW--FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKT--SEARNFLDGDLIESF 292
            LP P  ++  FL  LQ  L+ + + +  L+ +++R+  + KK   + +R  +DGDLI S+
Sbjct: 1361 LPLPEKVYRRFL-MLQNVLLSYQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSY 1419

Query: 291  LDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 196
              +  S+  EVAK +    EE+   + E+ RL
Sbjct: 1420 RLMANSERNEVAKKIGTRTEEILGDLLEIERL 1451



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>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi|
            transport factor 1) (Spliceosome-associated protein 130)
          Length = 1361

 Score = 36.2 bits (82), Expect = 0.043
 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = -1

Query: 375  HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 205
            H+++RS++     +  R  +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+
Sbjct: 1304 HQEYRSYY-----APVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356



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>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1|
          Length = 1256

 Score = 35.8 bits (81), Expect = 0.057
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -1

Query: 375  HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 205
            H ++RS++N  K     N +DGDLIE F +L++S    +   +     E+ K++ E+
Sbjct: 1199 HLKFRSYYNPVK-----NVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250



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>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1|
          Length = 1219

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 18/57 (31%), Positives = 34/57 (59%)
 Frame = -1

Query: 375  HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 205
            H + RS++N  K     N +DGDL+E FL+ + S   E+++ +   V ++ K++ +L
Sbjct: 1162 HLKLRSYYNPIK-----NVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213



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>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)|
          Length = 170

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 345 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 205
           K   E+ N +  DLI +F + +R KM++  K   +PV +L    K V EL
Sbjct: 84  KTIQESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133



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>YB3C_SCHPO (O14342) Hypothetical protein C2F12.12c in chromosome II|
          Length = 517

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
 Frame = -1

Query: 462 RLPAPRPLWFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDL 283
           R+ AP+    LE+L+A + K +K    L  + W    N  K+ +A  +L     E  L +
Sbjct: 188 RILAPKSFEQLEQLEAQIQKKLKSNVPLDTDYWVDLLNSLKSYKAIAYLKKTFNEE-LQI 246

Query: 282 NRSKM--EEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHPVLFVRFRCVVNRWRPE 118
            ++K+  EE  KA +   ++LS   +   +L+ + P    P+L  R + +  R +PE
Sbjct: 247 RKNKLDNEEWDKAFS-DAKKLSNMKDREEKLY-IVPIDPKPIL--RAQAIPRRIQPE 299



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>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)|
          Length = 166

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = -1

Query: 366 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 196
           + +F +D+    + + +  D+ + FL+ +  K+E+  K + +PV++L    K + EL ++
Sbjct: 80  FENFKDDQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139



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>Y109_NPVOP (O10348) Hypothetical 44.3 kDa protein (ORF109)|
          Length = 390

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -1

Query: 384 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMA-VPVEELSKRVEE 208
           +L HE+  S +N    +  R  L GD+  +   +NR+ ++ V  A   + + + S+ + E
Sbjct: 224 NLPHEEVDSLYNKLNWARTRRLLRGDIPSNCATVNRASLQYVKDAQTLLHIAKCSQTIVE 283

Query: 207 LTRL--H*VAPCRVHPVLFVR 151
             R+    + P ++ P++ V+
Sbjct: 284 FVRIFQQLIFPYQIVPIVIVK 304



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>PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer membrane|
           protein P.70]
          Length = 922

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = -3

Query: 463 SPPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRR 308
           +PP P     PG  PG   Q  Q    P+P      PQRQ +   PQ P  R
Sbjct: 567 APPAPKPAPQPGPQPGP--QPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGR 616



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>SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124)|
          Length = 303

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
 Frame = -1

Query: 399 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGDLIESF--LDLNRSKMEEVAKAMA 244
           +KGV +L      S+E+ ++ HN KK  E R  +DGD+ +    + + + K+E + KA A
Sbjct: 47  MKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANA 106



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>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 469  VSSPPCPTTTMVPGEAPGNPGQVHQ---GRGQPEPRA 368
            V +PP P  T    EAP +PG   +   GR QP P+A
Sbjct: 1142 VGAPPSPGVTRREMEAPKSPGTARKDNIGRNQPSPQA 1178



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>SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)|
          Length = 298

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
 Frame = -1

Query: 399 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGD--LIESFLDLNRSKMEEVAKAMA 244
           +KGV +L      S+E+ ++ HN KK  E R  +DGD  ++   + + + K+E + KA A
Sbjct: 42  MKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANA 101



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>CUC3A_HAECO (P16253) Cuticle collagen 3A3|
          Length = 295

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -3

Query: 469 VSSPPCPTTTMVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           VS PPC      P   PG PG        GQP P     +P +Q   G P  PG
Sbjct: 136 VSIPPCAECPAGPPGPPGKPGPPGDPGEDGQPGPPGQDGIPGQQGTKGPPGPPG 189



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>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)|
          Length = 561

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 460 PPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           P  P+ + VP  APG  G + Q R  P P      P R    GGP++ G
Sbjct: 313 PEAPSPSPVPSPAPGRKGSI-QDRPLPPP------PPRLPGYGGPKVEG 354



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>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 433 PGEAPGNPGQV--HQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           PGE PG PGQ   H  +G P P+ +   P  +   G P +PG
Sbjct: 634 PGE-PGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPG 674



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>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 303  SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLPGASP 431
            SG  PGS GP     + GTTA     + +G P+P    PG+P   P
Sbjct: 1000 SGAPPGSLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVPPPGP 1045



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>M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinase 12 (EC|
           2.7.11.25) (Mixed lineage kinase) (Leucine-zipper
           protein kinase) (ZPK) (Dual leucine zipper bearing
           kinase) (DLK) (MAPK-upstream kinase) (MUK)
          Length = 888

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 454 CPTTTMVP--GEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGP 326
           C    +VP  G+  G P     G   PEP A +V+   ++D GGP
Sbjct: 47  CVLRDVVPLGGQGGGGPSPSPGGEPPPEPFANSVLQLHEQDTGGP 91



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>M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kinase 12 (EC|
           2.7.11.25) (Mixed lineage kinase) (Leucine-zipper
           protein kinase) (ZPK) (Dual leucine zipper bearing
           kinase) (DLK) (MAPK-upstream kinase) (MUK)
          Length = 888

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 454 CPTTTMVP--GEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGP 326
           C    +VP  G+  G P     G   PEP A +V+   ++D GGP
Sbjct: 47  CVLRDVVPLGGQGGGGPSPSPGGEPPPEPFANSVLQLHEQDTGGP 91



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>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)|
          Length = 877

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
 Frame = -3

Query: 433 PGEAPGNPGQVHQ----GRGQPEP----RAVAVVPQRQEDVGGPQLPGRRPD*VIPRP 284
           PG   G PG   Q    GR  P P    R    +P R    G P LPG RP   +P P
Sbjct: 768 PGGVRGKPGPPAQSSLGGRNPPLPPSTGRPAPAIPNRPGG-GAPPLPGGRPGGSLPPP 824



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>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,|
            160 kDa subunit (CPSF 160 kDa subunit)
          Length = 1454

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -1

Query: 447  RPLWFLEKLQATLVKFIKGV---GSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNR 277
            R L FL+    ++   I G+   GS S +  +   N +    ARN +DGD++E +L L+ 
Sbjct: 1367 RRLHFLQTFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRN---ARNLIDGDVVEQYLHLSL 1423

Query: 276  SKMEEVAKAMAVPVEELSKRVEELTRL 196
                ++A+ + V    +   + +L R+
Sbjct: 1424 YDKTDLARRLGVGRYHIIDDLMQLRRM 1450



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>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 943

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 18/76 (23%)
 Frame = -3

Query: 460 PPCPTTTMVPGEAPG------------------NPGQVHQGRGQPEPRAVAVVPQRQEDV 335
           PPCP  + +   APG                  +PG  H G  QP   A AV    +   
Sbjct: 749 PPCPQRSTLMPAAPGVSPKLHDLSPAAYTKGVASPGHCHLGLPQPAGEAPAVQDVPRPVA 808

Query: 334 GGPQLPGRRPD*VIPR 287
             P  PG+ P  ++P+
Sbjct: 809 THPGSPGQPPPALLPQ 824



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>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = -3

Query: 466  SSPPCPTTTMVPGEAPGNPGQV--HQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD 302
            +SPP  T    P   P    Q+  H   G   PR      Q QE + GPQ P R P+
Sbjct: 1055 TSPPART----PARPPERKAQIERHLESGHTGPRQSLGGWQSQERLSGPQSPNRHPE 1107



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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -3

Query: 442 TMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           T+ PG  PG PGQ  +  G P PR    +P +   VG P LPG
Sbjct: 611 TLRPGP-PGYPGQKGE-TGFPGPRGQEGLPGKPGIVGAPGLPG 651



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>ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 33)
          Length = 797

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 31/127 (24%), Positives = 39/127 (30%), Gaps = 4/127 (3%)
 Frame = -3

Query: 457 PCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD*VIPRPXX 278
           PC       G + GN GQ H+G   P         QR    G     G  P+ ++P    
Sbjct: 541 PCFQQMNSMGNSQGNCGQDHKGSFLP-------CAQRDALCGKLLCQGGEPNPLVPHIVT 593

Query: 277 XXXXXXXXXXXGPCRGA-VQAGGGADETALGSAVPCTSC---FICSFSLCCKPLXXXXXX 110
                        CRGA V      D+  LG   P T C    +C    C          
Sbjct: 594 MDSTILLEGREVVCRGAFVLPDSHLDQLDLGLVEPGTGCGPRMVCQDRHCQNATSQELER 653

Query: 109 XXSVCSN 89
             + C N
Sbjct: 654 CLTACHN 660



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>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional|
            corepressor Sin3a) (Histone deacetylase complex subunit
            Sin3a)
          Length = 1273

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 29/91 (31%), Positives = 42/91 (46%)
 Frame = -1

Query: 351  NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 172
            N KKT E  + LD   +E    LN  KM  V K+     E+   R   L R H  +  RV
Sbjct: 1151 NSKKTMENVDSLDK--LECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1202

Query: 171  HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 79
               L  RF+  V++W  E+ P ++   T ++
Sbjct: 1203 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1233



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>BRD2_HUMAN (P25440) Bromodomain-containing protein 2 (RING3 protein) (O27.1.1)|
          Length = 801

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 466 SSPPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRR 308
           ++ P PT  + PG     PG +       EP+A  + P R+E  G P  P R+
Sbjct: 285 TTTPTPTAILAPGSPASPPGSL-------EPKAARLPPMRRES-GRPIKPPRK 329



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>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5037

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 457  PCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGG 329
            P PT+  V GE P  PG    G G+ E    A      E+V G
Sbjct: 4383 PDPTSDEVHGEQPAGPGGDADGAGEGEGEGDAAEGDGDEEVAG 4425



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>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional|
            corepressor Sin3a) (Histone deacetylase complex subunit
            Sin3a)
          Length = 1282

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 29/91 (31%), Positives = 41/91 (45%)
 Frame = -1

Query: 351  NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 172
            N KKT E  N    D +E    LN  KM  V K+     E+   R   L R H  +  RV
Sbjct: 1160 NSKKTME--NVESLDKLECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1211

Query: 171  HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 79
               L  RF+  V++W  E+ P ++   T ++
Sbjct: 1212 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1242



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>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)|
            (180 kDa bullous pemphigoid antigen 2)
          Length = 1497

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 315  PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPGASPGTIVVVGQ 455
            PG+ G P+     G+++T   SG P P    PG PG  PG+I   GQ
Sbjct: 971  PGALGIPSGPSEGGSSSTMYVSGPPGP----PGPPG-PPGSISSSGQ 1012



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>COL13_CAEEL (P20631) Cuticle collagen 13 precursor|
          Length = 316

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
 Frame = +3

Query: 315 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG-----ASPGTIVVVGQGG 461
           PG  GPP  + + G+   A   G P      PG PG      SPG     GQ G
Sbjct: 208 PGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPPGSPGPAGAPGQPG 261



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>COL12_CAEEL (P20630) Cuticle collagen 12 precursor|
          Length = 316

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
 Frame = +3

Query: 315 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG-----ASPGTIVVVGQGG 461
           PG  GPP  + + G+   A   G P      PG PG      SPG     GQ G
Sbjct: 208 PGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPPGSPGPAGAPGQPG 261



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>YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5|
          Length = 317

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = +3

Query: 288 RGMTQSGRRPGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPGASPGTIVVVGQGG 461
           RG+     RPG  GPP +  + G+ +T   +G P P    PG P   PG     GQ G
Sbjct: 201 RGLPGPSGRPGPQGPPGAPGQPGSGSTPGPAGPPGP----PG-PNGQPGHPGQDGQPG 253



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>COL40_CAEEL (P34804) Cuticle collagen 40|
          Length = 306

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = -3

Query: 451 PTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           P T   PG  PG PGQV +  G P P   A  P      G P   G
Sbjct: 210 PGTDGAPGN-PGAPGQVTETPGTPGPAGAAGPPGPPGPAGNPGSAG 254



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>EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (Protein Emu1)|
           (Emilin and multimerin domain-containing protein 1)
          Length = 441

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 20/46 (43%), Positives = 20/46 (43%)
 Frame = +3

Query: 315 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPGASPGTIVVVG 452
           PG  GPP S  R G   T    G P P    PG PG  PG    VG
Sbjct: 223 PGPQGPPGSPGRAGAVGTPGERGPPGP----PGPPG-PPGPPAPVG 263



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>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = -3

Query: 469 VSSPPCPTTTMVPGEAPGNPGQVHQG----RGQPEPRAVAVVPQRQEDVGGPQLPG 314
           V  PP P   M P   PG PGQ  QG    +G P P+     P  +   G P L G
Sbjct: 671 VDGPPGPKGNMGPQGEPGPPGQ--QGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAG 724



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>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)|
           (ApoL-IV)
          Length = 351

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 309 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 193
           +L++  LDL++    E A+++    +EL + + ELT +H
Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345



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>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 303  SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLPGASP 431
            SG  PGS GP     + G+TA     + +G P+P    PG+P   P
Sbjct: 1000 SGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGP 1045



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>PERT_BORBR (Q03035) Pertactin precursor (P.94) [Contains: Outer membrane|
           protein P.68]
          Length = 916

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = -3

Query: 463 SPPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRR 308
           +PP P     PG  PG           P+P      PQRQ +   PQ P  R
Sbjct: 570 APPAPKPAPQPGPQPG-----------PQPPQPPQPPQRQPEAPAPQPPAGR 610



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>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 911

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = -3

Query: 469 VSSPPCPTTTMVPGEAPGNPGQVHQG----RGQPEPRAVAVVPQRQEDVGGPQLPG 314
           V  PP P   M P   PG PGQ  QG    +G P P+     P  +   G P L G
Sbjct: 438 VDGPPGPKGNMGPQGEPGPPGQ--QGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAG 491



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>CBPA_DICDI (P35085) Calcium-binding protein|
          Length = 467

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
 Frame = -3

Query: 460 PPCPTTTMVPGEAPGNPGQVHQGRGQP------EPRAVAVVPQRQEDVGGPQLPGR 311
           P  P     P + PG PGQ    +GQP      +P      P +Q+    PQ PG+
Sbjct: 118 PQQPGQPGYPPQQPGAPGQYPPQQGQPGQYPPQQPGQPGQYPPQQQGQYPPQQPGQ 173



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>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor|
          Length = 1029

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 424 APGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           APG+PG V  G+G P PR     P R+ D G    PG
Sbjct: 411 APGSPG-VKGGKGGPGPRGPKGEPGRRGDPGTKGGPG 446



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>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1575

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -3

Query: 469  VSSPPCPTTTMVPGEAPGNPGQVHQ---GRGQPEPRA 368
            + +PP P       EAP +PG   +   GR QP P+A
Sbjct: 1145 IGAPPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQA 1181



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>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -3

Query: 469  VSSPPCPTTTMVPGEAPGNPGQVHQ---GRGQPEPRA 368
            V +PP P       EAP +PG   +   GR QP P+A
Sbjct: 1142 VGAPPSPGVARREIEAPKSPGTARKDNIGRNQPSPQA 1178



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>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/59 (30%), Positives = 22/59 (37%)
 Frame = -3

Query: 460 PPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD*VIPRP 284
           PP P  T +P   P  PG V      P P    + P      G P +P   P   +P P
Sbjct: 675 PPLPGGTGIPPPPPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPGIPPPPPGMGVPPP 733



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>ZN687_HUMAN (Q8N1G0) Zinc finger protein 687|
          Length = 1237

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
 Frame = -3

Query: 427 EAPGNPGQVHQGRG-QPEPRAVAVVPQRQEDVGGPQLPGRRPD*VIPRPXXXXXXXXXXX 251
           E PG PG+   G G + E  A A          GP +P +  D  +P P           
Sbjct: 35  EGPGGPGKPEPGVGSESEDTAAASAGD------GPGVPAQASDHGLPPPDISVVSVIVKN 88

Query: 250 XXGPCRGAVQAGGGADETALGSAV 179
              P +    AGG A + A  + V
Sbjct: 89  TVCPEQSEALAGGSAGDGAQAAGV 112



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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 460  PPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314
            PP P+  + P  +PG PGQV +  G+P          +  D G P +PG
Sbjct: 2231 PPGPSGLVGPQGSPGLPGQVGE-TGKPGAPGRDGASGKDGDRGSPGVPG 2278



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>BRO1_YEAST (P48582) Vacuolar sorting protein BRO1 (BRO domain-containing|
           protein 1) (BCK1-like resistance to osmotic shock
           protein 1) (Vacuolar protein sorting protein 31) (Amino
           acid sensor-independent protein 6) (Nitrogen permease
           inactivating protein
          Length = 844

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -1

Query: 384 SLSHEQWRSFHNDKKTSE---ARNFLDGDLIESFL 289
           S    QWR+F+++K TSE    RN  +G+L  S L
Sbjct: 29  SYGSSQWRTFYDEKATSELDHLRNNANGELAPSSL 63



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>SY121_ARATH (Q9ZSD4) Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1)|
          Length = 346

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -1

Query: 432 LEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEV 259
           L++L  TL        S  HEQ ++ HN K   + R+ +DGD+    + L ++KM +V
Sbjct: 61  LDRLNETL--------SSCHEQSKTLHNAKAVKDLRSKMDGDV---GVALKKAKMIKV 107



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>G168_PARPR (P17053) G surface protein, allelic form 168 precursor|
          Length = 2704

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 92   ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 196
            A  TC   + G   +++      K GCT +GAT C
Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671



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>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
 Frame = -3

Query: 457  PCPTTTMVPGEAPGNPGQVHQGRGQPEP---------------RAVAVVPQRQEDVGGPQ 323
            P PT+  VP   PG+P +V +  G P P               +AVA +P          
Sbjct: 1243 PTPTSKKVPLPGPGSP-EVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAP 1301

Query: 322  LPGRRPD*VIPRP 284
             P R+P   + +P
Sbjct: 1302 SPARQPPAALAKP 1314



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>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -3

Query: 457 PCPTTTMVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           P P   + P   PG PGQ      +G P P+     P  +  +G P LPG
Sbjct: 707 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 756



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>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -3

Query: 457 PCPTTTMVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           P P   + P   PG PGQ      +G P P+     P  +  +G P LPG
Sbjct: 707 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 756



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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 433 PGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           P  APG  G   +  G G   PR VA  P R    GGP + G
Sbjct: 495 PNGAPGEKGPAGERGGPGPAGPRGVAGEPGRDGTPGGPGIRG 536



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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 436 VPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           +PGE  G PG+   G G   PR VA  P R    GGP + G
Sbjct: 498 IPGEK-GPPGE-RGGPGPAGPRGVAGEPGRDGTPGGPGIRG 536



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>SOX17_HUMAN (Q9H6I2) Transcription factor SOX-17|
          Length = 414

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = -3

Query: 469 VSSPPCPTTTMVPGEAPG----NPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           V   P      +PG+ P     +  QV    G PEP A  + P+   +  GP +PG
Sbjct: 230 VDPDPAFFAAPMPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPG 285



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>YHY2_YEAST (P38870) Hypothetical 90.1 kDa protein in OYE2-GND1 intergenic|
           region
          Length = 785

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -1

Query: 411 LVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESF-LDLNRSKMEEVAKAMAVPV 235
           L+K IK      ++ W+   N+ +  EA N ++  L+E      N    E+V +   +P+
Sbjct: 60  LIKDIKFYNDFVNKFWKPTLNNLQKMEATNSMNSRLLEVMSKQFNIISTEQVERDCKIPL 119

Query: 234 EELSKRVEELTR 199
           +EL    E   R
Sbjct: 120 QELRDLNESFLR 131



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>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            [Contains: Transforming protein Int-3; Notch 4
            extracellular truncation; Notch 4 intracellular domain]
          Length = 1964

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
 Frame = +3

Query: 315  PGSCGPPTSSCRCGTTATARGSG-------CPRP**T*PGLPG---ASPGTIVVVGQGGD 464
            P  CGPP+     GT     G G       CP      P  PG     PG     G+GGD
Sbjct: 1127 PPGCGPPSPCLHNGTCTETPGLGNPGFQCTCP------PDSPGPRCQRPGASGCEGRGGD 1180

Query: 465  DT 470
             T
Sbjct: 1181 GT 1182



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>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -3

Query: 457 PCPTTTMVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           P P   + P   PG PGQ      +G P P+     P  +  +G P LPG
Sbjct: 705 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 754



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>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -3

Query: 457 PCPTTTMVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314
           P P   + P   PG PGQ      +G P P+     P  +  +G P LPG
Sbjct: 705 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 754


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,584,095
Number of Sequences: 219361
Number of extensions: 1182241
Number of successful extensions: 5224
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 4723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5185
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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