Clone Name | rbastl42c01 |
---|---|
Clone Library Name | barley_pub |
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 133 bits (334), Expect(2) = 2e-32 Identities = 64/81 (79%), Positives = 74/81 (91%) Frame = -1 Query: 435 FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVA 256 FLEKLQ L K IKGVG LSHEQWRSF+N+KKT +A+NFLDGDLIESFLDL+R++MEE++ Sbjct: 1015 FLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEIS 1074 Query: 255 KAMAVPVEELSKRVEELTRLH 193 KAM+VPVEEL KRVEELTRLH Sbjct: 1075 KAMSVPVEELMKRVEELTRLH 1095 Score = 25.0 bits (53), Expect(2) = 2e-32 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = -2 Query: 470 GIIASLPHDHY 438 G+IASLPHD Y Sbjct: 1003 GVIASLPHDQY 1013
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 133 bits (334), Expect(2) = 2e-32 Identities = 64/81 (79%), Positives = 74/81 (91%) Frame = -1 Query: 435 FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVA 256 FLEKLQ L K IKGVG LSHEQWRSF+N+KKT +A+NFLDGDLIESFLDL+R++MEE++ Sbjct: 1010 FLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEIS 1069 Query: 255 KAMAVPVEELSKRVEELTRLH 193 KAM+VPVEEL KRVEELTRLH Sbjct: 1070 KAMSVPVEELMKRVEELTRLH 1090 Score = 25.0 bits (53), Expect(2) = 2e-32 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = -2 Query: 470 GIIASLPHDHY 438 G+IASLPHD Y Sbjct: 998 GVIASLPHDQY 1008
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 130 bits (327), Expect = 2e-30 Identities = 63/81 (77%), Positives = 75/81 (92%) Frame = -1 Query: 435 FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVA 256 FLEKLQ++L K IKGVG LSHEQWRSF+N+K+T+EARNFLDGDLIESFLDL+R+KME+++ Sbjct: 1008 FLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDIS 1067 Query: 255 KAMAVPVEELSKRVEELTRLH 193 K+M V VEEL KRVEELTRLH Sbjct: 1068 KSMNVQVEELCKRVEELTRLH 1088
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 125 bits (315), Expect = 4e-29 Identities = 61/81 (75%), Positives = 71/81 (87%) Frame = -1 Query: 435 FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVA 256 FLEKLQ +L K IKGVG LSHEQWRSF+N+K+T+EA+ +LDGDLIESFLDL+R KMEE++ Sbjct: 1008 FLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEIS 1067 Query: 255 KAMAVPVEELSKRVEELTRLH 193 K M V VEEL KRVEELTRLH Sbjct: 1068 KGMDVQVEELCKRVEELTRLH 1088
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 79.7 bits (195), Expect = 3e-15 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 12/94 (12%) Frame = -1 Query: 438 WF--LEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKME 265 W+ L +Q L K IK VG + H WRSFH ++KT A F+DGDLIESFLD++R KM+ Sbjct: 1047 WYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQ 1106 Query: 264 EVAKAM----------AVPVEELSKRVEELTRLH 193 EV + ++L K VEELTR+H Sbjct: 1107 EVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 79.7 bits (195), Expect = 3e-15 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 12/94 (12%) Frame = -1 Query: 438 WF--LEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKME 265 W+ L +Q L K IK VG + H WRSFH ++KT A F+DGDLIESFLD++R KM+ Sbjct: 1047 WYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQ 1106 Query: 264 EVAKAM----------AVPVEELSKRVEELTRLH 193 EV + ++L K VEELTR+H Sbjct: 1107 EVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Frame = -1 Query: 432 LEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAK 253 L +LQ + K I G LSH++W+ + + +TS + + +DG LIES L L + E+ Sbjct: 987 LLQLQDNIRKVIPSFGGLSHKEWKEYRGENETSPS-DLIDGSLIESILGLREPILNEIVN 1045 Query: 252 A------MAVPVEELSKRVEELTRLH 193 + + V++L +E L +LH Sbjct: 1046 GGHEGTKLDISVQDLKSIIENLEKLH 1071
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 39.3 bits (90), Expect = 0.005 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 4/92 (4%) Frame = -1 Query: 459 LPAPRPLW--FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKT--SEARNFLDGDLIESF 292 LP P ++ FL LQ L+ + + + L+ +++R+ + KK + +R +DGDLI S+ Sbjct: 1361 LPLPEKVYRRFL-MLQNVLLSYQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSY 1419 Query: 291 LDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 196 + S+ EVAK + EE+ + E+ RL Sbjct: 1420 RLMANSERNEVAKKIGTRTEEILGDLLEIERL 1451
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi| transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Frame = -1 Query: 375 HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 205 H+++RS++ + R +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+ Sbjct: 1304 HQEYRSYY-----APVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 35.8 bits (81), Expect = 0.057 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = -1 Query: 375 HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 205 H ++RS++N K N +DGDLIE F +L++S + + E+ K++ E+ Sbjct: 1199 HLKFRSYYNPVK-----NVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 34.7 bits (78), Expect = 0.13 Identities = 18/57 (31%), Positives = 34/57 (59%) Frame = -1 Query: 375 HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 205 H + RS++N K N +DGDL+E FL+ + S E+++ + V ++ K++ +L Sbjct: 1162 HLKLRSYYNPIK-----NVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)| Length = 170 Score = 32.0 bits (71), Expect = 0.82 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -1 Query: 345 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 205 K E+ N + DLI +F + +R KM++ K +PV +L K V EL Sbjct: 84 KTIQESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133
>YB3C_SCHPO (O14342) Hypothetical protein C2F12.12c in chromosome II| Length = 517 Score = 32.0 bits (71), Expect = 0.82 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Frame = -1 Query: 462 RLPAPRPLWFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDL 283 R+ AP+ LE+L+A + K +K L + W N K+ +A +L E L + Sbjct: 188 RILAPKSFEQLEQLEAQIQKKLKSNVPLDTDYWVDLLNSLKSYKAIAYLKKTFNEE-LQI 246 Query: 282 NRSKM--EEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHPVLFVRFRCVVNRWRPE 118 ++K+ EE KA + ++LS + +L+ + P P+L R + + R +PE Sbjct: 247 RKNKLDNEEWDKAFS-DAKKLSNMKDREEKLY-IVPIDPKPIL--RAQAIPRRIQPE 299
>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 32.0 bits (71), Expect = 0.82 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = -1 Query: 366 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 196 + +F +D+ + + + D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 80 FENFKDDQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>Y109_NPVOP (O10348) Hypothetical 44.3 kDa protein (ORF109)| Length = 390 Score = 32.0 bits (71), Expect = 0.82 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Frame = -1 Query: 384 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMA-VPVEELSKRVEE 208 +L HE+ S +N + R L GD+ + +NR+ ++ V A + + + S+ + E Sbjct: 224 NLPHEEVDSLYNKLNWARTRRLLRGDIPSNCATVNRASLQYVKDAQTLLHIAKCSQTIVE 283 Query: 207 LTRL--H*VAPCRVHPVLFVR 151 R+ + P ++ P++ V+ Sbjct: 284 FVRIFQQLIFPYQIVPIVIVK 304
>PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer membrane| protein P.70] Length = 922 Score = 31.6 bits (70), Expect = 1.1 Identities = 19/52 (36%), Positives = 22/52 (42%) Frame = -3 Query: 463 SPPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRR 308 +PP P PG PG Q Q P+P PQRQ + PQ P R Sbjct: 567 APPAPKPAPQPGPQPGP--QPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGR 616
>SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124)| Length = 303 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Frame = -1 Query: 399 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGDLIESF--LDLNRSKMEEVAKAMA 244 +KGV +L S+E+ ++ HN KK E R +DGD+ + + + + K+E + KA A Sbjct: 47 MKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANA 106
>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = -3 Query: 469 VSSPPCPTTTMVPGEAPGNPGQVHQ---GRGQPEPRA 368 V +PP P T EAP +PG + GR QP P+A Sbjct: 1142 VGAPPSPGVTRREMEAPKSPGTARKDNIGRNQPSPQA 1178
>SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)| Length = 298 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Frame = -1 Query: 399 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGD--LIESFLDLNRSKMEEVAKAMA 244 +KGV +L S+E+ ++ HN KK E R +DGD ++ + + + K+E + KA A Sbjct: 42 MKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANA 101
>CUC3A_HAECO (P16253) Cuticle collagen 3A3| Length = 295 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Frame = -3 Query: 469 VSSPPCPTTTMVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314 VS PPC P PG PG GQP P +P +Q G P PG Sbjct: 136 VSIPPCAECPAGPPGPPGKPGPPGDPGEDGQPGPPGQDGIPGQQGTKGPPGPPG 189
>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)| Length = 561 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = -3 Query: 460 PPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314 P P+ + VP APG G + Q R P P P R GGP++ G Sbjct: 313 PEAPSPSPVPSPAPGRKGSI-QDRPLPPP------PPRLPGYGGPKVEG 354
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = -3 Query: 433 PGEAPGNPGQV--HQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314 PGE PG PGQ H +G P P+ + P + G P +PG Sbjct: 634 PGE-PGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPG 674
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +3 Query: 303 SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLPGASP 431 SG PGS GP + GTTA + +G P+P PG+P P Sbjct: 1000 SGAPPGSLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVPPPGP 1045
>M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 888 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -3 Query: 454 CPTTTMVP--GEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGP 326 C +VP G+ G P G PEP A +V+ ++D GGP Sbjct: 47 CVLRDVVPLGGQGGGGPSPSPGGEPPPEPFANSVLQLHEQDTGGP 91
>M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 888 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -3 Query: 454 CPTTTMVP--GEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGP 326 C +VP G+ G P G PEP A +V+ ++D GGP Sbjct: 47 CVLRDVVPLGGQGGGGPSPSPGGEPPPEPFANSVLQLHEQDTGGP 91
>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)| Length = 877 Score = 30.4 bits (67), Expect = 2.4 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 8/58 (13%) Frame = -3 Query: 433 PGEAPGNPGQVHQ----GRGQPEP----RAVAVVPQRQEDVGGPQLPGRRPD*VIPRP 284 PG G PG Q GR P P R +P R G P LPG RP +P P Sbjct: 768 PGGVRGKPGPPAQSSLGGRNPPLPPSTGRPAPAIPNRPGG-GAPPLPGGRPGGSLPPP 824
>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,| 160 kDa subunit (CPSF 160 kDa subunit) Length = 1454 Score = 30.4 bits (67), Expect = 2.4 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%) Frame = -1 Query: 447 RPLWFLEKLQATLVKFIKGV---GSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNR 277 R L FL+ ++ I G+ GS S + + N + ARN +DGD++E +L L+ Sbjct: 1367 RRLHFLQTFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRN---ARNLIDGDVVEQYLHLSL 1423 Query: 276 SKMEEVAKAMAVPVEELSKRVEELTRL 196 ++A+ + V + + +L R+ Sbjct: 1424 YDKTDLARRLGVGRYHIIDDLMQLRRM 1450
>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT| transcription complex cytosolic component) (NF-ATc1) (NF-ATc) Length = 943 Score = 30.0 bits (66), Expect = 3.1 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 18/76 (23%) Frame = -3 Query: 460 PPCPTTTMVPGEAPG------------------NPGQVHQGRGQPEPRAVAVVPQRQEDV 335 PPCP + + APG +PG H G QP A AV + Sbjct: 749 PPCPQRSTLMPAAPGVSPKLHDLSPAAYTKGVASPGHCHLGLPQPAGEAPAVQDVPRPVA 808 Query: 334 GGPQLPGRRPD*VIPR 287 P PG+ P ++P+ Sbjct: 809 THPGSPGQPPPALLPQ 824
>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2014 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Frame = -3 Query: 466 SSPPCPTTTMVPGEAPGNPGQV--HQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD 302 +SPP T P P Q+ H G PR Q QE + GPQ P R P+ Sbjct: 1055 TSPPART----PARPPERKAQIERHLESGHTGPRQSLGGWQSQERLSGPQSPNRHPE 1107
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = -3 Query: 442 TMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314 T+ PG PG PGQ + G P PR +P + VG P LPG Sbjct: 611 TLRPGP-PGYPGQKGE-TGFPGPRGQEGLPGKPGIVGAPGLPG 651
>ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 33) Length = 797 Score = 29.6 bits (65), Expect = 4.1 Identities = 31/127 (24%), Positives = 39/127 (30%), Gaps = 4/127 (3%) Frame = -3 Query: 457 PCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD*VIPRPXX 278 PC G + GN GQ H+G P QR G G P+ ++P Sbjct: 541 PCFQQMNSMGNSQGNCGQDHKGSFLP-------CAQRDALCGKLLCQGGEPNPLVPHIVT 593 Query: 277 XXXXXXXXXXXGPCRGA-VQAGGGADETALGSAVPCTSC---FICSFSLCCKPLXXXXXX 110 CRGA V D+ LG P T C +C C Sbjct: 594 MDSTILLEGREVVCRGAFVLPDSHLDQLDLGLVEPGTGCGPRMVCQDRHCQNATSQELER 653 Query: 109 XXSVCSN 89 + C N Sbjct: 654 CLTACHN 660
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 29.6 bits (65), Expect = 4.1 Identities = 29/91 (31%), Positives = 42/91 (46%) Frame = -1 Query: 351 NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 172 N KKT E + LD +E LN KM V K+ E+ R L R H + RV Sbjct: 1151 NSKKTMENVDSLDK--LECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1202 Query: 171 HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 79 L RF+ V++W E+ P ++ T ++ Sbjct: 1203 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1233
>BRD2_HUMAN (P25440) Bromodomain-containing protein 2 (RING3 protein) (O27.1.1)| Length = 801 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -3 Query: 466 SSPPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRR 308 ++ P PT + PG PG + EP+A + P R+E G P P R+ Sbjct: 285 TTTPTPTAILAPGSPASPPGSL-------EPKAARLPPMRRES-GRPIKPPRK 329
>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5037 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = -3 Query: 457 PCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGG 329 P PT+ V GE P PG G G+ E A E+V G Sbjct: 4383 PDPTSDEVHGEQPAGPGGDADGAGEGEGEGDAAEGDGDEEVAG 4425
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 29.6 bits (65), Expect = 4.1 Identities = 29/91 (31%), Positives = 41/91 (45%) Frame = -1 Query: 351 NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 172 N KKT E N D +E LN KM V K+ E+ R L R H + RV Sbjct: 1160 NSKKTME--NVESLDKLECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1211 Query: 171 HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 79 L RF+ V++W E+ P ++ T ++ Sbjct: 1212 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1242
>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)| (180 kDa bullous pemphigoid antigen 2) Length = 1497 Score = 29.3 bits (64), Expect = 5.3 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +3 Query: 315 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPGASPGTIVVVGQ 455 PG+ G P+ G+++T SG P P PG PG PG+I GQ Sbjct: 971 PGALGIPSGPSEGGSSSTMYVSGPPGP----PGPPG-PPGSISSSGQ 1012
>COL13_CAEEL (P20631) Cuticle collagen 13 precursor| Length = 316 Score = 29.3 bits (64), Expect = 5.3 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Frame = +3 Query: 315 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG-----ASPGTIVVVGQGG 461 PG GPP + + G+ A G P PG PG SPG GQ G Sbjct: 208 PGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPPGSPGPAGAPGQPG 261
>COL12_CAEEL (P20630) Cuticle collagen 12 precursor| Length = 316 Score = 29.3 bits (64), Expect = 5.3 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Frame = +3 Query: 315 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG-----ASPGTIVVVGQGG 461 PG GPP + + G+ A G P PG PG SPG GQ G Sbjct: 208 PGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPPGSPGPAGAPGQPG 261
>YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5| Length = 317 Score = 29.3 bits (64), Expect = 5.3 Identities = 21/58 (36%), Positives = 27/58 (46%) Frame = +3 Query: 288 RGMTQSGRRPGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPGASPGTIVVVGQGG 461 RG+ RPG GPP + + G+ +T +G P P PG P PG GQ G Sbjct: 201 RGLPGPSGRPGPQGPPGAPGQPGSGSTPGPAGPPGP----PG-PNGQPGHPGQDGQPG 253
>COL40_CAEEL (P34804) Cuticle collagen 40| Length = 306 Score = 29.3 bits (64), Expect = 5.3 Identities = 18/46 (39%), Positives = 19/46 (41%) Frame = -3 Query: 451 PTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314 P T PG PG PGQV + G P P A P G P G Sbjct: 210 PGTDGAPGN-PGAPGQVTETPGTPGPAGAAGPPGPPGPAGNPGSAG 254
>EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (Protein Emu1)| (Emilin and multimerin domain-containing protein 1) Length = 441 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/46 (43%), Positives = 20/46 (43%) Frame = +3 Query: 315 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPGASPGTIVVVG 452 PG GPP S R G T G P P PG PG PG VG Sbjct: 223 PGPQGPPGSPGRAGAVGTPGERGPPGP----PGPPG-PPGPPAPVG 263
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 29.3 bits (64), Expect = 5.3 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Frame = -3 Query: 469 VSSPPCPTTTMVPGEAPGNPGQVHQG----RGQPEPRAVAVVPQRQEDVGGPQLPG 314 V PP P M P PG PGQ QG +G P P+ P + G P L G Sbjct: 671 VDGPPGPKGNMGPQGEPGPPGQ--QGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAG 724
>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)| (ApoL-IV) Length = 351 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = -1 Query: 309 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 193 +L++ LDL++ E A+++ +EL + + ELT +H Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345
>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1214 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +3 Query: 303 SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLPGASP 431 SG PGS GP + G+TA + +G P+P PG+P P Sbjct: 1000 SGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGP 1045
>PERT_BORBR (Q03035) Pertactin precursor (P.94) [Contains: Outer membrane| protein P.68] Length = 916 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/52 (32%), Positives = 20/52 (38%) Frame = -3 Query: 463 SPPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRR 308 +PP P PG PG P+P PQRQ + PQ P R Sbjct: 570 APPAPKPAPQPGPQPG-----------PQPPQPPQPPQRQPEAPAPQPPAGR 610
>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)| Length = 911 Score = 29.3 bits (64), Expect = 5.3 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Frame = -3 Query: 469 VSSPPCPTTTMVPGEAPGNPGQVHQG----RGQPEPRAVAVVPQRQEDVGGPQLPG 314 V PP P M P PG PGQ QG +G P P+ P + G P L G Sbjct: 438 VDGPPGPKGNMGPQGEPGPPGQ--QGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAG 491
>CBPA_DICDI (P35085) Calcium-binding protein| Length = 467 Score = 29.3 bits (64), Expect = 5.3 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Frame = -3 Query: 460 PPCPTTTMVPGEAPGNPGQVHQGRGQP------EPRAVAVVPQRQEDVGGPQLPGR 311 P P P + PG PGQ +GQP +P P +Q+ PQ PG+ Sbjct: 118 PQQPGQPGYPPQQPGAPGQYPPQQGQPGQYPPQQPGQPGQYPPQQQGQYPPQQPGQ 173
>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor| Length = 1029 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -3 Query: 424 APGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314 APG+PG V G+G P PR P R+ D G PG Sbjct: 411 APGSPG-VKGGKGGPGPRGPKGEPGRRGDPGTKGGPG 446
>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1575 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Frame = -3 Query: 469 VSSPPCPTTTMVPGEAPGNPGQVHQ---GRGQPEPRA 368 + +PP P EAP +PG + GR QP P+A Sbjct: 1145 IGAPPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQA 1181
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 28.9 bits (63), Expect = 6.9 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Frame = -3 Query: 469 VSSPPCPTTTMVPGEAPGNPGQVHQ---GRGQPEPRA 368 V +PP P EAP +PG + GR QP P+A Sbjct: 1142 VGAPPSPGVARREIEAPKSPGTARKDNIGRNQPSPQA 1178
>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) (mDIA1) (p140mDIA) Length = 1255 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/59 (30%), Positives = 22/59 (37%) Frame = -3 Query: 460 PPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD*VIPRP 284 PP P T +P P PG V P P + P G P +P P +P P Sbjct: 675 PPLPGGTGIPPPPPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPGIPPPPPGMGVPPP 733
>ZN687_HUMAN (Q8N1G0) Zinc finger protein 687| Length = 1237 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 1/84 (1%) Frame = -3 Query: 427 EAPGNPGQVHQGRG-QPEPRAVAVVPQRQEDVGGPQLPGRRPD*VIPRPXXXXXXXXXXX 251 E PG PG+ G G + E A A GP +P + D +P P Sbjct: 35 EGPGGPGKPEPGVGSESEDTAAASAGD------GPGVPAQASDHGLPPPDISVVSVIVKN 88 Query: 250 XXGPCRGAVQAGGGADETALGSAV 179 P + AGG A + A + V Sbjct: 89 TVCPEQSEALAGGSAGDGAQAAGV 112
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = -3 Query: 460 PPCPTTTMVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314 PP P+ + P +PG PGQV + G+P + D G P +PG Sbjct: 2231 PPGPSGLVGPQGSPGLPGQVGE-TGKPGAPGRDGASGKDGDRGSPGVPG 2278
>BRO1_YEAST (P48582) Vacuolar sorting protein BRO1 (BRO domain-containing| protein 1) (BCK1-like resistance to osmotic shock protein 1) (Vacuolar protein sorting protein 31) (Amino acid sensor-independent protein 6) (Nitrogen permease inactivating protein Length = 844 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Frame = -1 Query: 384 SLSHEQWRSFHNDKKTSE---ARNFLDGDLIESFL 289 S QWR+F+++K TSE RN +G+L S L Sbjct: 29 SYGSSQWRTFYDEKATSELDHLRNNANGELAPSSL 63
>SY121_ARATH (Q9ZSD4) Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1)| Length = 346 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -1 Query: 432 LEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEV 259 L++L TL S HEQ ++ HN K + R+ +DGD+ + L ++KM +V Sbjct: 61 LDRLNETL--------SSCHEQSKTLHNAKAVKDLRSKMDGDV---GVALKKAKMIKV 107
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +2 Query: 92 ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 196 A TC + G +++ K GCT +GAT C Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 15/73 (20%) Frame = -3 Query: 457 PCPTTTMVPGEAPGNPGQVHQGRGQPEP---------------RAVAVVPQRQEDVGGPQ 323 P PT+ VP PG+P +V + G P P +AVA +P Sbjct: 1243 PTPTSKKVPLPGPGSP-EVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAP 1301 Query: 322 LPGRRPD*VIPRP 284 P R+P + +P Sbjct: 1302 SPARQPPAALAKP 1314
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -3 Query: 457 PCPTTTMVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314 P P + P PG PGQ +G P P+ P + +G P LPG Sbjct: 707 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 756
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -3 Query: 457 PCPTTTMVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314 P P + P PG PGQ +G P P+ P + +G P LPG Sbjct: 707 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 756
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Frame = -3 Query: 433 PGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314 P APG G + G G PR VA P R GGP + G Sbjct: 495 PNGAPGEKGPAGERGGPGPAGPRGVAGEPGRDGTPGGPGIRG 536
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = -3 Query: 436 VPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314 +PGE G PG+ G G PR VA P R GGP + G Sbjct: 498 IPGEK-GPPGE-RGGPGPAGPRGVAGEPGRDGTPGGPGIRG 536
>SOX17_HUMAN (Q9H6I2) Transcription factor SOX-17| Length = 414 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Frame = -3 Query: 469 VSSPPCPTTTMVPGEAPG----NPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 314 V P +PG+ P + QV G PEP A + P+ + GP +PG Sbjct: 230 VDPDPAFFAAPMPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPG 285
>YHY2_YEAST (P38870) Hypothetical 90.1 kDa protein in OYE2-GND1 intergenic| region Length = 785 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = -1 Query: 411 LVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESF-LDLNRSKMEEVAKAMAVPV 235 L+K IK ++ W+ N+ + EA N ++ L+E N E+V + +P+ Sbjct: 60 LIKDIKFYNDFVNKFWKPTLNNLQKMEATNSMNSRLLEVMSKQFNIISTEQVERDCKIPL 119 Query: 234 EELSKRVEELTR 199 +EL E R Sbjct: 120 QELRDLNESFLR 131
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)| [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 28.5 bits (62), Expect = 9.1 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 10/62 (16%) Frame = +3 Query: 315 PGSCGPPTSSCRCGTTATARGSG-------CPRP**T*PGLPG---ASPGTIVVVGQGGD 464 P CGPP+ GT G G CP P PG PG G+GGD Sbjct: 1127 PPGCGPPSPCLHNGTCTETPGLGNPGFQCTCP------PDSPGPRCQRPGASGCEGRGGD 1180 Query: 465 DT 470 T Sbjct: 1181 GT 1182
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -3 Query: 457 PCPTTTMVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314 P P + P PG PGQ +G P P+ P + +G P LPG Sbjct: 705 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 754
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -3 Query: 457 PCPTTTMVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 314 P P + P PG PGQ +G P P+ P + +G P LPG Sbjct: 705 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 754 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,584,095 Number of Sequences: 219361 Number of extensions: 1182241 Number of successful extensions: 5224 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 4723 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5185 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)