Clone Name | rbastl42b10 |
---|---|
Clone Library Name | barley_pub |
>VGP_EBOIC (Q66810) Structural glycoprotein precursor (Virion spike| glycoprotein) [Contains: GP1; GP2] Length = 676 Score = 31.2 bits (69), Expect = 0.63 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +2 Query: 137 FPIAARNPNQRHSTPGIANIKFDLPTKRGAKLNT*PINQTEDLTKN 274 FPI ARN + S G+ + D T + AK + P N TE T N Sbjct: 377 FPINARNTDHTKSFIGLEGPQEDHSTTQPAKTTSQPTNSTESTTLN 422
>LRRN3_HUMAN (Q9H3W5) Leucine-rich repeats neuronal protein 3 precursor| (Neuronal leucine-rich repeat protein 3) (NLRR-3) Length = 708 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 208 PNKKGSQTEYITNQSNRGPNKKYETDLPNNLTRLDL 315 P + + T+ + Q+N +Y TD P NLT LDL Sbjct: 64 PARLPANTQILLLQTNNIAKIEYSTDFPVNLTGLDL 99
>LRRN3_PONPY (Q5R482) Leucine-rich repeats neuronal protein 3 precursor| (Neuronal leucine-rich repeat protein 3) (NLRR-3) Length = 708 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 208 PNKKGSQTEYITNQSNRGPNKKYETDLPNNLTRLDL 315 P + + T+ + Q+N +Y TD P NLT LDL Sbjct: 64 PARLPANTQILLLQTNDIAKIEYSTDFPVNLTGLDL 99
>PGK_TROWT (Q83GI2) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 395 Score = 27.3 bits (59), Expect = 9.1 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = -3 Query: 243 GYVFSL-APLFVGRSNFIFAMPGVECLW--LGFRAAIGKVRRLFSFWKGFPRILVSHLGR 73 G+ F AP+FV R +F M V + L RA++ + L +G P IL+SHLGR Sbjct: 6 GFTFPCDAPVFV-RVDFNVPMDEVGTITDDLRIRASLPTIESLLG--RGAPLILISHLGR 62
>PGK_TROW8 (Q83HP8) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 395 Score = 27.3 bits (59), Expect = 9.1 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = -3 Query: 243 GYVFSL-APLFVGRSNFIFAMPGVECLW--LGFRAAIGKVRRLFSFWKGFPRILVSHLGR 73 G+ F AP+FV R +F M V + L RA++ + L +G P IL+SHLGR Sbjct: 6 GFTFPCDAPVFV-RVDFNVPMDEVGTITDDLRIRASLPTIESLLG--RGAPLILISHLGR 62
>ESCO1_BRARE (Q5SPR8) N-acetyltransferase ESCO1 (EC 2.3.1.-) (Establishment of| cohesion 1 homolog 1) (ECO1 homolog 1) Length = 609 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +2 Query: 68 NERPK*LTSIRGKPFQKLNRRRTFPIAARNPNQRHSTP 181 N K +TS+R P + ++ PI+ +P + STP Sbjct: 16 NPSKKQITSLRSSPRRTTRQKENIPISLNSPQKIPSTP 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,267,011 Number of Sequences: 219361 Number of extensions: 1110903 Number of successful extensions: 2837 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2805 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2837 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)