>AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydrogenase 2,|
            chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes:
            Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC
            1.1.1.3)]
          Length = 917

 Score =  122 bits (306), Expect = 4e-28
 Identities = 59/60 (98%), Positives = 59/60 (98%)
 Frame = -2

Query: 444  YNRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS 265
            Y RDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS
Sbjct: 858  YRRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS 917

>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydrogenase 1,|
            chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes:
            Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC
            1.1.1.3)]
          Length = 920

 Score =  120 bits (300), Expect = 2e-27
 Identities = 57/60 (95%), Positives = 59/60 (98%)
 Frame = -2

Query: 444  YNRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS 265
            Y RDHPFAQLSGSDNIIAFTTSRYK+QPLIVRGPGAGAEVTAGGVFCDILRL+SYLGAPS
Sbjct: 861  YKRDHPFAQLSGSDNIIAFTTSRYKDQPLIVRGPGAGAEVTAGGVFCDILRLSSYLGAPS 920

>AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydrogenase,|
            chloroplast precursor (AK-HD) (AK-HSDH) [Includes:
            Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC
            1.1.1.3)] (Fragment)
          Length = 921

 Score =  105 bits (261), Expect = 6e-23
 Identities = 50/60 (83%), Positives = 54/60 (90%)
 Frame = -2

Query: 444  YNRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS 265
            Y ++HPFAQLSGSDNI AFTT RY +QP I+RGPGAGAEVTAGGVF DILRLASYLGAPS
Sbjct: 862  YKKEHPFAQLSGSDNINAFTTERYNKQPPIIRGPGAGAEVTAGGVFSDILRLASYLGAPS 921

>DHOM_SCHPO (O94671) Probable homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 376

 Score = 68.2 bits (165), Expect = 9e-12
 Identities = 32/58 (55%), Positives = 41/58 (70%)
 Frame = -2

Query: 444 YNRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGA 271
           Y+  HPFA L  SDNII+FTT RY  +PL+V G GAGA VTA GV  D++++ S + A
Sbjct: 313 YDASHPFANLQSSDNIISFTTKRYHTRPLVVIGAGAGAAVTAAGVLGDMIKIMSQVRA 370

>DHOM_YEAST (P31116) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 359

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 28/56 (50%), Positives = 39/56 (69%)
 Frame = -2

Query: 444 YNRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASYL 277
           Y+  HPFA L GSDN+I+  T RY   P++++G GAGA VTA GV  D++++A  L
Sbjct: 305 YDYSHPFASLKGSDNVISIKTKRY-TNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL 359

>AK2H_ECOLI (P00562) Bifunctional aspartokinase/homoserine dehydrogenase II|
           (AKII-HDII) [Includes: Aspartokinase II (EC 2.7.2.4);
           Homoserine dehydrogenase II (EC 1.1.1.3)]
          Length = 809

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 27/53 (50%), Positives = 35/53 (66%)
 Frame = -2

Query: 435 DHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASYL 277
           DHP A L   DN+ A  +  Y++ PL++RGPGAG +VTAG +  DI RLA  L
Sbjct: 757 DHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINRLAQLL 809

>AKH_BUCAI (P57290) Bifunctional aspartokinase/homoserine dehydrogenase|
           (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4);
           Homoserine dehydrogenase (EC 1.1.1.3)]
          Length = 816

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 24/53 (45%), Positives = 35/53 (66%)
 Frame = -2

Query: 441 NRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLAS 283
           N ++P  ++   +N +AF T+ Y+  PL++RG GAG  VTA GVF D+LR  S
Sbjct: 764 NINNPLYKVKNGENALAFYTNYYQPIPLVLRGYGAGNNVTASGVFSDLLRTLS 816

>AKH_BUCAP (Q8K9U9) Bifunctional aspartokinase/homoserine dehydrogenase|
           (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4);
           Homoserine dehydrogenase (EC 1.1.1.3)]
          Length = 814

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 35/51 (68%)
 Frame = -2

Query: 441 NRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRL 289
           N ++P  ++   +N + F T+ Y+  PL++RG GAG +VTA GVF D+LR+
Sbjct: 762 NSNNPLYKVKNGENALTFYTNYYQPIPLVLRGYGAGNDVTASGVFSDLLRI 812

>AK1H_SERMA (P27725) Bifunctional aspartokinase/homoserine dehydrogenase I|
           (AKI-HDI) [Includes: Aspartokinase I (EC 2.7.2.4);
           Homoserine dehydrogenase I (EC 1.1.1.3)]
          Length = 819

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = -2

Query: 429 PFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASY 280
           P  ++   +N +AF +  Y+  PL++RG GAG +VTA GVF D+LR  S+
Sbjct: 766 PLYKVKNGENALAFYSRYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSW 815

>AK1H_ECOLI (P00561) Bifunctional aspartokinase/homoserine dehydrogenase I|
           (AKI-HDI) [Includes: Aspartokinase I (EC 2.7.2.4);
           Homoserine dehydrogenase I (EC 1.1.1.3)]
          Length = 820

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = -2

Query: 429 PFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASY 280
           P  ++   +N +AF +  Y+  PL++RG GAG +VTA GVF D+LR  S+
Sbjct: 767 PLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSW 816

>AKH_HAEIN (P44505) Bifunctional aspartokinase/homoserine dehydrogenase|
           (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4);
           Homoserine dehydrogenase (EC 1.1.1.3)]
          Length = 815

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = -2

Query: 435 DHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILR 292
           ++P  ++   +N +AF T  Y+  PL++RG GAG  VTA G+F DILR
Sbjct: 764 NNPLYKVKDGENALAFYTRYYQPIPLLLRGYGAGNAVTAAGIFADILR 811

>AKH_BUCBP (Q89AR4) Bifunctional aspartokinase/homoserine dehydrogenase|
           (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4);
           Homoserine dehydrogenase (EC 1.1.1.3)]
          Length = 816

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = -2

Query: 435 DH--PFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRL 289
           DH  P   +   +N +AF +  Y+  PL++RG GAG  VTA G+F D+LR+
Sbjct: 764 DHNDPLYNIKNGENALAFYSKYYQPIPLVLRGYGAGNNVTASGIFSDVLRI 814

>RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1
           papain-like cysteine proteinase (EC 3.4.22.-) (PCP);
           Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP);
           Nonstructural protein
          Length = 3175

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 215 LPAIYLRKSINTVTDIYEGAPR*DASRRMSQKTPPAVTSAPAPGPRT-ISGCSLYLEVVK 391
           +PA  +R S N+  D+ + AP     +  ++   P  T AP P PRT + G S    +  
Sbjct: 396 VPAPRVRPSANSSGDVKDPAPVPPVPKPRTKLATPNPTQAPIPAPRTRLQGASTQEPLAS 455

Query: 392 AMMLSD 409
           A + SD
Sbjct: 456 AGVASD 461

>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2386

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 22/58 (37%), Positives = 27/58 (46%)
 Frame = +2

Query: 209 YKLPAIYLRKSINTVTDIYEGAPR*DASRRMSQKTPPAVTSAPAPGPRTISGCSLYLE 382
           Y   A  L  S+  V   Y G PR D    M+ K PP V  APAP    +  CS+Y +
Sbjct: 55  YSHVAAVLGGSVLLVAGGYSGRPRGDL---MAYKVPPFVFQAPAPDYH-LDYCSMYTD 108

>ABDA_DROME (P29555) Homeobox protein abdominal-A|
          Length = 590

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +1

Query: 97  TPPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAGHLPQKIYQYSHRY--L*G 270
           +P    QH G Q+  S + SS  F+    QVQ      Q   HL  +  Q+ H+Y  L  
Sbjct: 99  SPSHLSQHLG-QSPHSPVSSSSPFQQHHPQVQQQHLNHQQQQHLHHQQQQHHHQYSSLSA 157

Query: 271 GAEVGRQPQDVAKDASGSHLRARAWPAHDQWLLLVPRSG 387
             ++ +Q   ++K A+ +   A    AH Q LL  P +G
Sbjct: 158 ALQLQQQQHHISKLAAAA--VASHGHAHQQLLLTPPSAG 194

>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 932

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
 Frame = +2

Query: 92  SLHPLPRNSTLANKTKHLICFPRKYSEQKTTKSNIVQEGYKLPAIYLRKSINTVTDIYEG 271
           S  P PR +      K +   P      K T S    +G    +   ++   ++  + E 
Sbjct: 618 SASPSPRKAESQTSAKTVPQAP-----DKATSSLRQSDGTPYSSAQPQRDTRSIGSLPER 672

Query: 272 APR*DASRR-----MSQKTPPAVTSAPAPGPRT 355
            P    S++      +QK+P A  +AP PGPRT
Sbjct: 673 EPSASTSQKDLAAAAAQKSPSAEAAAPPPGPRT 705

>TBX4_HUMAN (P57082) T-box transcription factor TBX4 (T-box protein 4)|
          Length = 545

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 100 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAGH----LPQKIY 243
           P  K + TG   KT Y+L   +    D++ ++C  +  VAG     +P ++Y
Sbjct: 98  PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 149

>ARP6_YEAST (Q12509) Actin-like protein ARP6|
          Length = 438

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +2

Query: 8   RHSLFYYCTDNSVTVLPWVANKTKQNT*SLHPLPRNSTLANKTKHLICFPRKYSE---QK 178
           +H+L Y   D   + L +V N  K+N     PLP ++ +   T  L   P  +      +
Sbjct: 269 KHALEYVLPDFQTSFLGYVRNPRKENV----PLPEDAQIITLTDELFTIPETFFHPEISQ 324

Query: 179 TTKSNIVQ 202
            TK  IV+
Sbjct: 325 ITKPGIVE 332

>TBX4_CANFA (Q861Q9) T-box transcription factor TBX4 (T-box protein 4)|
          Length = 554

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 100 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAGH----LPQKIY 243
           P  K + TG   KT Y+L   +    D++ ++C  +  VAG     +P ++Y
Sbjct: 105 PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 156

>TBX4_MOUSE (P70325) T-box transcription factor TBX4 (T-box protein 4)|
          Length = 552

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 100 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAGH----LPQKIY 243
           P  K + TG   KT Y+L   +    D++ ++C  +  VAG     +P ++Y
Sbjct: 103 PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 154

>GYRB_BORBU (P33769) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 639

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 100 PPTKEQHTGKQN----KTSYLLSSQVFRTKDYQVQYCARRVQVAGHLPQKIY 243
           P +K +  G+ +    K ++L  S++F T DY      +R++    L  KIY
Sbjct: 152 PTSKVEVVGESSVTGTKVTFLADSEIFETLDYNFDVLEKRLKELAFLNDKIY 203

>DHOM_SYNY3 (P52986) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 433

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 438 RDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASYL 277
           +DHP A ++G  N +  T     +  ++  G GAGA  TA  V  D++ +   +
Sbjct: 271 KDHPLASVNGVYNGVLVTGDPLGQ--VMFYGRGAGAGPTASAVVSDVINIVGII 322

>PALH_NEUCR (Q7RY98) pH-response regulator protein palH/rim-21|
          Length = 778

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 268 GGAEVGRQPQDVAKDASGSHLRARAWPAHDQWLLLVPRSGEGDDVVGS 411
           G A  G  P   A+    SH+ A+A  A  +W  L P     D V  S
Sbjct: 545 GSASPGSAPAQDARSTQNSHVGAKASSAGSRWHALTPTVSSRDFVTRS 592

>IMMT_HUMAN (Q16891) Mitochondrial inner membrane protein (Mitofilin) (p87/89)|
           (Proliferation-inducing gene 4 protein)
          Length = 758

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 130 QNKTSYLLSSQVFRTKDYQVQYCARRVQVAGHLPQKIYQYSHRYL 264
           ++ T  + S +  R + Y VQ  ARRV +       +YQY   YL
Sbjct: 619 ESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYL 663

>HIS81_PSEAE (Q9HVX0) Histidinol-phosphate aminotransferase 1 (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase 1)
          Length = 351

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 341 PGPRTISGCSLYLEVVKAMMLSDPDS 418
           P P   +GC L L+ ++AM+ + PDS
Sbjct: 151 PNPNAPTGCLLPLDAIEAMLKASPDS 176

>IMMT_MOUSE (Q8CAQ8) Mitochondrial inner membrane protein (Mitofilin)|
          Length = 757

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 130 QNKTSYLLSSQVFRTKDYQVQYCARRVQVAGHLPQKIYQYSHRYL 264
           ++ T  + S +  R + Y VQ  ARRV +       +YQY   YL
Sbjct: 618 ESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYL 662

>BCA1_YEAST (P38891) Branched-chain-amino-acid aminotransferase, mitochondrial|
           precursor (EC 2.6.1.42) (BCAT) (TWT1 protein) (ECA39
           protein)
          Length = 393

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
 Frame = +2

Query: 65  ANKTKQNT*SLHPLPRNSTLANKTKHLICFPRKYSEQ--KTTKSNIVQEGYKLP-----A 223
           A +T QNT ++    +N    NK+   IC P   SE+  K T   I Q+ + +P     +
Sbjct: 98  AYRTPQNTITMFRPDKNMARMNKSAARICLPTFESEELIKLTGKLIEQDKHLVPQGNGYS 157

Query: 224 IYLRKS-INTVTDIYEGAP 277
           +Y+R + I T   +  G P
Sbjct: 158 LYIRPTMIGTSKGLGVGTP 176

>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)|
           (IAB-7) (PH189)
          Length = 493

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 443 TIETTHSLSYLDPTTSSPSPLRGTRSSH*SCAG 345
           ++E T + SY  PT SSP  LRG  S + S +G
Sbjct: 327 SVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSG 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,447,083
Number of Sequences: 219361
Number of extensions: 1470258
Number of successful extensions: 5051
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5049
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)