ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107387.1| Zea mays PCO149313 mRNA sequence 210 3e-51
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
3dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
4dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
5dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
6dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
7ref|NM_191406.1| Oryza sativa (japonica cultivar-group), predic... 174 1e-40
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 8e-27
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
10gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 129 8e-27
11dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 8e-27
12emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in... 44 0.36
13emb|AL592283.5| Mouse DNA sequence from clone RP23-386C23 on chr... 44 0.36
14gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 42 1.4
15gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete s... 42 1.4
16gb|AC013480.12| Homo sapiens BAC clone RP11-564O16 from 2, compl... 42 1.4
17ref|XM_640880.1| Dictyostelium discoideum hypothetical protein (... 40 5.6
18gb|U32572.1| Trypanosoma cruzi mucin (muc.ca-1) gene, partial cds 40 5.6
19gb|U32447.1| Trypanosoma cruzi mucin-like protein (muc.ca-3) gen... 40 5.6
20gb|L20809.1| Trypanosoma cruzi mucin-like protein gene, complete... 40 5.6
21gb|AC117686.10| Mus musculus chromosome 16, clone RP23-440B15, c... 40 5.6
22emb|AJ891031.1| Sus scrofa SP-C gene for surfactant protein C, e... 40 5.6
23emb|AJ891124.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 5.6
24emb|AJ891123.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 5.6
25gb|AC129601.4| Mus musculus BAC clone RP23-444N1 from chromosome... 40 5.6
26ref|XM_759090.1| Theileria parva strain Muguga chromosome 4 hypo... 40 5.6
27emb|AL359878.13| Human DNA sequence from clone RP11-363N22 on ch... 40 5.6
28emb|AL163191.2|SPAC140 S.pombe chromosome I cosmid c140 40 5.6
29gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, co... 40 5.6
30gb|AC009349.6|AC009349 Drosophila melanogaster, chromosome 3R, r... 40 5.6
31gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome 3R, r... 40 5.6
32gb|AC012680.5|AC012680 Arabidopsis thaliana chromosome 1 BAC T11... 40 5.6
33emb|AJ920269.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 5.6
34emb|AJ920268.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 5.6
35emb|AJ920267.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 5.6
36emb|AJ920266.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 5.6
37gb|AE003778.3| Drosophila melanogaster chromosome 3R, section 11... 40 5.6
38gb|U61533.1|TCU61533 Trypanosoma cruzi mucin-like protein (MUC.T... 40 5.6
39gb|U32346.1|TCU32346 Trypanosoma cruzi mucin-like protein (muc.c... 40 5.6
40emb|AL355177.14| Mouse DNA sequence from clone RP21-61H21 on chr... 40 5.6 
>gb|AY107387.1| Zea mays PCO149313 mRNA sequence
          Length = 1336

 Score =  210 bits (106), Expect = 3e-51
 Identities = 148/162 (91%)
 Strand = Plus / Minus

                                                                        
Query: 240  tttacctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagccc 299
            |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 1086 tttacctcaccgccccttggggttcatgatctgcgagaagacggcgctaggcgtcagccc 1027

                                                                        
Query: 300  gtccgagtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgt 359
             |||||||| || ||||||||||||||||||||||||||||| ||||| || || || ||
Sbjct: 1026 atccgagtctatactcgcgacgctttggtcgcccatgcttatagaagtggtggttgtggt 967

                                                      
Query: 360  ggtggtgcttgagtcgatcgacgggtcattggggtccttctt 401
            |||||||||||| |||||||| ||||| || |||||||||||
Sbjct: 966  ggtggtgcttgactcgatcgatgggtcgttcgggtccttctt 925
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  176 bits (89), Expect = 4e-41
 Identities = 149/169 (88%)
 Strand = Plus / Minus

                                                                            
Query: 245      ctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccg 304
                ||||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| |
Sbjct: 32458055 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 32457996

                                                                            
Query: 305      agtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtgg 364
                |||| ||||| || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 32457995 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 32457936

                                                                 
Query: 365      tgcttgagtcgatcgacgggtcattggggtccttctttccaggcatcac 413
                ||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct: 32457935 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcac 32457887
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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score =  176 bits (89), Expect = 4e-41
 Identities = 149/169 (88%)
 Strand = Plus / Minus

                                                                         
Query: 245   ctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccg 304
             ||||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| |
Sbjct: 45576 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 45517

                                                                         
Query: 305   agtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtgg 364
             |||| ||||| || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 45516 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 45457

                                                              
Query: 365   tgcttgagtcgatcgacgggtcattggggtccttctttccaggcatcac 413
             ||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct: 45456 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcac 45408
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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1143G03
          Length = 137770

 Score =  176 bits (89), Expect = 4e-41
 Identities = 149/169 (88%)
 Strand = Plus / Minus

                                                                          
Query: 245    ctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccg 304
              ||||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| |
Sbjct: 137552 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 137493

                                                                          
Query: 305    agtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtgg 364
              |||| ||||| || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 137492 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 137433

                                                               
Query: 365    tgcttgagtcgatcgacgggtcattggggtccttctttccaggcatcac 413
              ||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct: 137432 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcac 137384
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>dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A03, full
            insert sequence
          Length = 1761

 Score =  176 bits (89), Expect = 4e-41
 Identities = 149/169 (88%)
 Strand = Plus / Minus

                                                                        
Query: 245  ctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccg 304
            ||||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| |
Sbjct: 1505 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 1446

                                                                        
Query: 305  agtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtgg 364
            |||| ||||| || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 1445 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 1386

                                                             
Query: 365  tgcttgagtcgatcgacgggtcattggggtccttctttccaggcatcac 413
            ||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct: 1385 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcac 1337
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>dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064M23, full
            insert sequence
          Length = 3155

 Score =  176 bits (89), Expect = 4e-41
 Identities = 149/169 (88%)
 Strand = Plus / Minus

                                                                        
Query: 245  ctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccg 304
            ||||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| |
Sbjct: 2922 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 2863

                                                                        
Query: 305  agtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtgg 364
            |||| ||||| || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 2862 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 2803

                                                             
Query: 365  tgcttgagtcgatcgacgggtcattggggtccttctttccaggcatcac 413
            ||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct: 2802 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcac 2754
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>ref|NM_191406.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2691

 Score =  174 bits (88), Expect = 1e-40
 Identities = 148/168 (88%)
 Strand = Plus / Minus

                                                                        
Query: 246  tcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccga 305
            |||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| ||
Sbjct: 2691 tcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgga 2632

                                                                        
Query: 306  gtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtggt 365
            ||| ||||| || || ||||||||||||||||||||||| || || ||||| || |||||
Sbjct: 2631 gtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtggt 2572

                                                            
Query: 366  gcttgagtcgatcgacgggtcattggggtccttctttccaggcatcac 413
            |||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct: 2571 gcttgactcgatcgatggatcattgggatccttctttccaggcatcac 2524
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 8e-27
 Identities = 140/165 (84%)
 Strand = Plus / Minus

                                                                            
Query: 241      ttacctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccg 300
                ||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| 
Sbjct: 12284690 ttacctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagccca 12284631

                                                                            
Query: 301      tccgagtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtg 360
                |||||||| || || || || || || || ||||||||||| || || || || || || 
Sbjct: 12284630 tccgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtc 12284571

                                                             
Query: 361      gtggtgcttgagtcgatcgacgggtcattggggtccttctttcca 405
                ||||||||||| ||||| || || |||||||| ||||||||||||
Sbjct: 12284570 gtggtgcttgactcgatagatggatcattgggatccttctttcca 12284526
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 8e-27
 Identities = 140/165 (84%)
 Strand = Plus / Minus

                                                                            
Query: 241      ttacctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccg 300
                ||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| 
Sbjct: 12281453 ttacctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagccca 12281394

                                                                            
Query: 301      tccgagtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtg 360
                |||||||| || || || || || || || ||||||||||| || || || || || || 
Sbjct: 12281393 tccgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtc 12281334

                                                             
Query: 361      gtggtgcttgagtcgatcgacgggtcattggggtccttctttcca 405
                ||||||||||| ||||| || || |||||||| ||||||||||||
Sbjct: 12281333 gtggtgcttgactcgatagatggatcattgggatccttctttcca 12281289
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score =  129 bits (65), Expect = 8e-27
 Identities = 140/165 (84%)
 Strand = Plus / Minus

                                                                         
Query: 241   ttacctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccg 300
             ||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| 
Sbjct: 54223 ttacctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagccca 54164

                                                                         
Query: 301   tccgagtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtg 360
             |||||||| || || || || || || || ||||||||||| || || || || || || 
Sbjct: 54163 tccgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtc 54104

                                                          
Query: 361   gtggtgcttgagtcgatcgacgggtcattggggtccttctttcca 405
             ||||||||||| ||||| || || |||||||| ||||||||||||
Sbjct: 54103 gtggtgcttgactcgatagatggatcattgggatccttctttcca 54059
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>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full
            insert sequence
          Length = 3171

 Score =  129 bits (65), Expect = 8e-27
 Identities = 140/165 (84%)
 Strand = Plus / Minus

                                                                        
Query: 241  ttacctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccg 300
            ||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| 
Sbjct: 2929 ttacctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagccca 2870

                                                                        
Query: 301  tccgagtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtg 360
            |||||||| || || || || || || || ||||||||||| || || || || || || 
Sbjct: 2869 tccgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtc 2810

                                                         
Query: 361  gtggtgcttgagtcgatcgacgggtcattggggtccttctttcca 405
            ||||||||||| ||||| || || |||||||| ||||||||||||
Sbjct: 2809 gtggtgcttgactcgatagatggatcattgggatccttctttcca 2765
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>emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in linkage group 11,
            complete sequence
          Length = 158354

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 182  atgaaaacacattgaatgaataaatt 207
            ||||||||||||| ||||||||||||
Sbjct: 7425 atgaaaacacatttaatgaataaatt 7450
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>emb|AL592283.5| Mouse DNA sequence from clone RP23-386C23 on chromosome 4, complete
             sequence
          Length = 197763

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 133   caaggcaaggcagaaatgtcta 154
             ||||||||||||||||||||||
Sbjct: 93886 caaggcaaggcagaaatgtcta 93865
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 286     ctcggcgtcagcccgtccgag 306
               |||||||||||||||||||||
Sbjct: 1910765 ctcggcgtcagcccgtccgag 1910745
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>gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete sequence
          Length = 124394

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 179   ctcatgaaaacacattgaatg 199
             |||||||||||||||||||||
Sbjct: 55325 ctcatgaaaacacattgaatg 55345
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>gb|AC013480.12| Homo sapiens BAC clone RP11-564O16 from 2, complete sequence
          Length = 128466

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 186  aaacacattgaatgaataaat 206
            |||||||||||||||||||||
Sbjct: 9561 aaacacattgaatgaataaat 9541
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>ref|XM_640880.1| Dictyostelium discoideum hypothetical protein (DDB0216656), partial
            mRNA
          Length = 3588

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  tgaaaacacattgaatgaat 202
            ||||||||||||||||||||
Sbjct: 3025 tgaaaacacattgaatgaat 3006
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>gb|U32572.1| Trypanosoma cruzi mucin (muc.ca-1) gene, partial cds
          Length = 235

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 171 gttgtcgtggtcgtggtggt 152
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>gb|U32447.1| Trypanosoma cruzi mucin-like protein (muc.ca-3) gene, complete cds
          Length = 652

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 399 gttgtcgtggtcgtggtggt 380



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 333 gttgtcgtggtcgtggtggt 314



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 300 gttgtcgtggtcgtggtggt 281



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 204 gttgtcgtggtcgtggtggt 185
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>gb|L20809.1| Trypanosoma cruzi mucin-like protein gene, complete cds
          Length = 775

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 236 gttgtcgtggtcgtggtggt 217
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>gb|AC117686.10| Mus musculus chromosome 16, clone RP23-440B15, complete sequence
          Length = 210851

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  actcatgaaaacacattgaa 197
            ||||||||||||||||||||
Sbjct: 6051 actcatgaaaacacattgaa 6032
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>emb|AJ891031.1| Sus scrofa SP-C gene for surfactant protein C, exons 1-6
          Length = 2710

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 ttgtcgtggtcgtggtggtg 366
           ||||||||||||||||||||
Sbjct: 856 ttgtcgtggtcgtggtggtg 875
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>emb|AJ891124.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), short splice
           variant lacking exon 5
          Length = 688

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 ttgtcgtggtcgtggtggtg 366
           ||||||||||||||||||||
Sbjct: 116 ttgtcgtggtcgtggtggtg 135
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>emb|AJ891123.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), long variant
          Length = 867

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 ttgtcgtggtcgtggtggtg 366
           ||||||||||||||||||||
Sbjct: 180 ttgtcgtggtcgtggtggtg 199
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>gb|AC129601.4| Mus musculus BAC clone RP23-444N1 from chromosome 16, complete sequence
          Length = 173054

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    actcatgaaaacacattgaa 197
              ||||||||||||||||||||
Sbjct: 134936 actcatgaaaacacattgaa 134917
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>ref|XM_759090.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0548) partial mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 106 tcattacaacgctgaagaagaaga 129
           |||||| |||||||||||||||||
Sbjct: 8   tcattaaaacgctgaagaagaaga 31
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>emb|AL359878.13| Human DNA sequence from clone RP11-363N22 on chromosome 10 Contains the
             5' end of gene KIAA0217, a novel gene, the 5' end of the
             gene for G protein-binding protein CRFG (NGB FLJ10686
             FLJ10690 FLJ39774) and four CpG islands, complete sequence
          Length = 184289

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   gaatgaataaattagggccg 214
             ||||||||||||||||||||
Sbjct: 94716 gaatgaataaattagggccg 94735
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>emb|AL163191.2|SPAC140 S.pombe chromosome I cosmid c140
          Length = 15326

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   gaagaagaagaatacaaggc 138
             ||||||||||||||||||||
Sbjct: 12297 gaagaagaagaatacaaggc 12278
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>gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, complete sequence
          Length = 195979

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 183   tgaaaacacattgaatgaataaat 206
             ||||||||||||||||||| ||||
Sbjct: 53339 tgaaaacacattgaatgaaaaaat 53316
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>gb|AC009349.6|AC009349 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone
             BACR10O09, complete sequence
          Length = 165555

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   ttgaatgaataaattagggc 212
             ||||||||||||||||||||
Sbjct: 11693 ttgaatgaataaattagggc 11712
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>gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone
              BACR02G16, complete sequence
          Length = 177480

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    ttgaatgaataaattagggc 212
              ||||||||||||||||||||
Sbjct: 101623 ttgaatgaataaattagggc 101642
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>gb|AC012680.5|AC012680 Arabidopsis thaliana chromosome 1 BAC T11I11 genomic sequence, complete
             sequence
          Length = 69506

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   ctgaagaagaagaatacaaggcaa 140
             |||||||||||||| |||||||||
Sbjct: 16015 ctgaagaagaagaagacaaggcaa 16038
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>emb|AJ920269.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), allele 97
          Length = 772

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 ttgtcgtggtcgtggtggtg 366
           ||||||||||||||||||||
Sbjct: 116 ttgtcgtggtcgtggtggtg 135
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>emb|AJ920268.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), allele 92
          Length = 772

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 ttgtcgtggtcgtggtggtg 366
           ||||||||||||||||||||
Sbjct: 116 ttgtcgtggtcgtggtggtg 135
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>emb|AJ920267.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), allele 78
          Length = 784

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 ttgtcgtggtcgtggtggtg 366
           ||||||||||||||||||||
Sbjct: 116 ttgtcgtggtcgtggtggtg 135
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>emb|AJ920266.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), allele 73
          Length = 781

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 ttgtcgtggtcgtggtggtg 366
           ||||||||||||||||||||
Sbjct: 116 ttgtcgtggtcgtggtggtg 135
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>gb|AE003778.3| Drosophila melanogaster chromosome 3R, section 116 of 118 of the
             complete sequence
          Length = 225974

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   ttgaatgaataaattagggc 212
             ||||||||||||||||||||
Sbjct: 83890 ttgaatgaataaattagggc 83909
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>gb|U61533.1|TCU61533 Trypanosoma cruzi mucin-like protein (MUC.T0-1) gene, complete cds
          Length = 531

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 188 gttgtcgtggtcgtggtggt 169
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>gb|U32346.1|TCU32346 Trypanosoma cruzi mucin-like protein (muc.ca-2) gene, complete cds
          Length = 554

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 301 gttgtcgtggtcgtggtggt 282



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 268 gttgtcgtggtcgtggtggt 249



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 235 gttgtcgtggtcgtggtggt 216



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gttgtcgtggtcgtggtggt 365
           ||||||||||||||||||||
Sbjct: 202 gttgtcgtggtcgtggtggt 183
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>emb|AL355177.14| Mouse DNA sequence from clone RP21-61H21 on chromosome 5, complete
             sequence
          Length = 134781

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   tgaaactcatgaaaacacat 193
             ||||||||||||||||||||
Sbjct: 98404 tgaaactcatgaaaacacat 98385


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,347,311
Number of Sequences: 3902068
Number of extensions: 4347311
Number of successful extensions: 86184
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86010
Number of HSP's gapped (non-prelim): 174
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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