ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S23A1_MOUSE (Q9Z2J0) Solute carrier family 23 member 1 (Sodium-d... 30 3.5
2S23A1_HUMAN (Q9UHI7) Solute carrier family 23 member 1 (Sodium-d... 30 3.5
3S23A1_RAT (Q9WTW7) Solute carrier family 23 member 1 (Sodium-dep... 30 3.5
4RAMP3_CAVPO (Q8R4C4) Receptor activity-modifying protein 3 precu... 28 7.7
5C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor... 28 7.7

>S23A1_MOUSE (Q9Z2J0) Solute carrier family 23 member 1 (Sodium-dependent|
           vitamin C transporter 1) (Na(+)/L-ascorbic acid
           transporter 1) (Yolk sac permease-like molecule 3)
          Length = 605

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 270 PWIPIPYPCSW 238
           PWI IPYPC W
Sbjct: 308 PWIRIPYPCQW 318



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>S23A1_HUMAN (Q9UHI7) Solute carrier family 23 member 1 (Sodium-dependent|
           vitamin C transporter 1) (hSVCT1) (Na(+)/L-ascorbic acid
           transporter 1) (Yolk sac permease-like molecule 3)
          Length = 598

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 270 PWIPIPYPCSW 238
           PWI IPYPC W
Sbjct: 301 PWIRIPYPCQW 311



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>S23A1_RAT (Q9WTW7) Solute carrier family 23 member 1 (Sodium-dependent|
           vitamin C transporter 1) (Na(+)/L-ascorbic acid
           transporter 1)
          Length = 604

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 270 PWIPIPYPCSW 238
           PWI IPYPC W
Sbjct: 308 PWIRIPYPCQW 318



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>RAMP3_CAVPO (Q8R4C4) Receptor activity-modifying protein 3 precursor|
          Length = 146

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 279 RFVW*LCLCPSTKNICGVNYNRRRLQRVVSRY*EVYRERMHHLL--QWWNLQLYVV 440
           + +W L LC +   +CG N   R L+R + R  + + ERM  +   +W +L  ++V
Sbjct: 9   QLLWLLLLCGTCARVCGCN-ETRMLER-LPRCGKTFAERMREVAVWKWCDLSQFIV 62



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>C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor (Complement|
           component 1, q subcomponent, receptor 1) (C1qR) (C1qRp)
           (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (CDw93)
          Length = 652

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 408 GGDASFLCILPSTWRLLAAVFFCYN*RHRCSSCSGKGRVT 289
           GGD SFLC     +RLL  +  C + R+ CSS   +G  T
Sbjct: 278 GGDGSFLCGCRPGFRLLDDLVTCAS-RNPCSSSPCRGGAT 316


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,838,520
Number of Sequences: 219361
Number of extensions: 1527493
Number of successful extensions: 4121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4121
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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