ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl42b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL136096.7| Human DNA sequence from clone RP1-23D17 on chrom... 40 2.6
2gb|AC079177.21| Homo sapiens Xp BAC RP11-147B14 (Roswell Park Ca... 40 2.6

>emb|AL136096.7| Human DNA sequence from clone RP1-23D17 on chromosome 6q15-16.2
             Contains the SPACA1 gene for sperm acrosome associated 1,
             part of the CNR1 gene for cannabinoid receptor 1 (brain)
             and a CpG island, complete sequence
          Length = 112212

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   atgttgcttattctcacttg 173
             ||||||||||||||||||||
Sbjct: 76751 atgttgcttattctcacttg 76770



to top

>gb|AC079177.21| Homo sapiens Xp BAC RP11-147B14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 155533

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    ttgtgaataatgctaccaacatta 71
             |||||||||| |||||||||||||
Sbjct: 25257 ttgtgaataaagctaccaacatta 25234


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,878,679
Number of Sequences: 3902068
Number of extensions: 1878679
Number of successful extensions: 149672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149666
Number of HSP's gapped (non-prelim): 6
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top