>IF3X_HUMAN (O75153) Putative eukaryotic translation initiation factor 3|
           subunit (eIF-3)
          Length = 1309

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 5   ELWPAIDCKNKFQLIHSNARHYLADSFQTFMFDSRPLPEP 124
           EL  +++CK    +I ++ RHY+ D  +TF  D   LP P
Sbjct: 544 ELCSSVECKG---IIGNDGRHYILDLLRTFPPDLNFLPVP 580

>MSH6_HUMAN (P52701) DNA mismatch repair protein MSH6 (MutS-alpha 160 kDa|
           subunit) (G/T mismatch binding protein) (GTBP) (GTMBP)
           (p160)
          Length = 1360

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 51  TATPDIIWQIAFKRSCLILDLYQNLWTAPVDQPSIPELPLAYQL--TLTTERETHKTEAT 224
           +A P+I+  +      L  D  + L  A  D+PS PE     ++  T  T++     E  
Sbjct: 167 SAKPEILRAMQRADEALNKDKIKRLELAVCDEPSEPEEEEEMEVGTTYVTDKSEEDNEIE 226

Query: 225 SQPKVHPKT 251
           S+ +V PKT
Sbjct: 227 SEEEVQPKT 235

>SIGL5_HUMAN (O15389) Sialic acid-binding Ig-like lectin 5 precursor (Siglec-5)|
           (Obesity-binding protein 2) (OB-binding protein 2)
           (OB-BP2) (CD33 antigen-like 2) (CD170 antigen)
          Length = 551

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 126 WTAPVDQPSIPELPLAYQLTLTTERETHKTEATSQPK 236
           WT     P  PE   + +LTLT   E H T  T Q K
Sbjct: 180 WTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMK 216

>KRAF1_DROME (P11346) Raf homolog serine/threonine-protein kinase dRAF-1 (EC|
           2.7.11.1) (Protein pole-hole)
          Length = 739

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +2

Query: 53  SNARHYLADSFQTFMFDSRP-LPEPMDGTSRSTQHS*ASTCIPAHPYNRKRDAQNRG--N 223
           +N R   ++  ++ +  +RP LP P    S STQ S  ST     P  R  D  N+    
Sbjct: 353 NNIRSVTSEVQRSLIMQARPPLPHPCTDHSNSTQASPTSTLKHNRPRARSADESNKNLLL 412

Query: 224 EPAKSSP*N 250
             AKSS  N
Sbjct: 413 RDAKSSEEN 421

>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor|
            (Fibrocystin) (Polyductin) (Tigmin)
          Length = 4074

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 60   PDIIWQIAFKRSCLILDLYQ-NLWTAPVDQPSIPE 161
            P ++W +   RSC I++L + ++W   +  P IP+
Sbjct: 1225 PALVWVLVGNRSCDIVNLTEASIWCETLPAPQIPD 1259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,043,865
Number of Sequences: 219361
Number of extensions: 646516
Number of successful extensions: 1644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)