>ref|XM_464147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3121

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 342  tccctcactcctcgtggtattccgggttcttctt 375
            |||||||||||||||  |||||||||||||||||
Sbjct: 2770 tccctcactcctcgttatattccgggttcttctt 2737

>ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_C03.11 mRNA
          Length = 3169

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 342  tccctcactcctcgtggtattccgggttcttctt 375
            |||||||||||||||  |||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttctt 2744

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                 
Query: 342     tccctcactcctcgtggtattccgggttcttctt 375
               |||||||||||||||  |||||||||||||||||
Sbjct: 2570749 tccctcactcctcgttatattccgggttcttctt 2570716

>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_C03
          Length = 103297

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 342   tccctcactcctcgtggtattccgggttcttctt 375
             |||||||||||||||  |||||||||||||||||
Sbjct: 49532 tccctcactcctcgttatattccgggttcttctt 49499

>dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C09, full
            insert sequence
          Length = 3120

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 342  tccctcactcctcgtggtattccgggttcttctt 375
            |||||||||||||||  |||||||||||||||||
Sbjct: 2769 tccctcactcctcgttatattccgggttcttctt 2736

>dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full
            insert sequence
          Length = 3169

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 342  tccctcactcctcgtggtattccgggttcttctt 375
            |||||||||||||||  |||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttctt 2744

>gb|AY104160.1| Zea mays PCO080306 mRNA sequence
          Length = 1460

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 346  tcactcctcgtggtattccgggttcttctt 375
            ||||||||||||||| || |||||||||||
Sbjct: 1044 tcactcctcgtggtactctgggttcttctt 1015

>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence
          Length = 208850

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    tacacacttgatacatataca 68
             |||||||||||||||||||||
Sbjct: 48749 tacacacttgatacatataca 48729

>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
              complete sequence
          Length = 143425

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     cacacttgatacatatacaaa 70
              |||||||||||||||||||||
Sbjct: 114349 cacacttgatacatatacaaa 114369



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     cacacttgatacatatacaaa 70
              |||||||||||||||||||||
Sbjct: 104510 cacacttgatacatatacaaa 104530

>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete
              sequence
          Length = 181415

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 50     cacacttgatacatatacaaa 70
              |||||||||||||||||||||
Sbjct: 154850 cacacttgatacatatacaaa 154830

>dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130006D24 product:unclassifiable, full
            insert sequence
          Length = 3651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   tacacacttgatacatataca 68
            |||||||||||||||||||||
Sbjct: 2970 tacacacttgatacatataca 2990

>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete
             sequence
          Length = 151493

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 197   aataaaaatgtttttggatgg 217
             |||||||||||||||||||||
Sbjct: 61609 aataaaaatgtttttggatgg 61589

>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence
          Length = 202294

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   aataaaaatgtttttggatg 216
             ||||||||||||||||||||
Sbjct: 56757 aataaaaatgtttttggatg 56738

>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205032

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     acacacttgatacatataca 68
              ||||||||||||||||||||
Sbjct: 184660 acacacttgatacatataca 184679

>gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, complete sequence
          Length = 179807

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    acacacttgatacatataca 68
             ||||||||||||||||||||
Sbjct: 23843 acacacttgatacatataca 23862

>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0)
           partial mRNA
          Length = 287

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  acatatacaaataagcttaa 79
           ||||||||||||||||||||
Sbjct: 213 acatatacaaataagcttaa 232

>ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105151.00.0)
           partial mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  cacttgatacatatacaaat 71
           ||||||||||||||||||||
Sbjct: 599 cacttgatacatatacaaat 618

>gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, complete sequence
          Length = 131548

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    cagttctaaagatgtaactt 43
             ||||||||||||||||||||
Sbjct: 64502 cagttctaaagatgtaactt 64521

>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence
          Length = 162949

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    atgccgaggtgtaagagcat 248
              ||||||||||||||||||||
Sbjct: 107859 atgccgaggtgtaagagcat 107878

>gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complete sequence
          Length = 151297

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   tccctcactcctcgtggtat 361
             ||||||||||||||||||||
Sbjct: 66748 tccctcactcctcgtggtat 66729

>gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, complete sequence
          Length = 162101

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    cagttctaaagatgtaactt 43
             ||||||||||||||||||||
Sbjct: 67063 cagttctaaagatgtaactt 67044

>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence
          Length = 184579

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   atgccgaggtgtaagagcat 248
             ||||||||||||||||||||
Sbjct: 65374 atgccgaggtgtaagagcat 65393

>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    tacacacttgatacatatac 67
             ||||||||||||||||||||
Sbjct: 49955 tacacacttgatacatatac 49936

>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
             sequence
          Length = 221374

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    acacacttgatacatataca 68
             ||||||||||||||||||||
Sbjct: 64556 acacacttgatacatataca 64575


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,200,499
Number of Sequences: 3902068
Number of extensions: 3200499
Number of successful extensions: 58478
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58395
Number of HSP's gapped (non-prelim): 83
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)