ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCRT_DROME (P45843) Protein scarlet 29 4.0
2ROBO1_MOUSE (O89026) Roundabout homolog 1 precursor 28 8.8

>SCRT_DROME (P45843) Protein scarlet|
          Length = 666

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 63  GLYIPFYLFGIICLCRRARR 4
           GLY  F+L G  CL RRAR+
Sbjct: 646 GLYFGFHLLGYYCLWRRARK 665



to top

>ROBO1_MOUSE (O89026) Roundabout homolog 1 precursor|
          Length = 1612

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 48 FYLFGIICLCRRAR 7
          FYLFG+ICLC  +R
Sbjct: 8  FYLFGLICLCSGSR 21


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,053,859
Number of Sequences: 219361
Number of extensions: 446737
Number of successful extensions: 1233
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top