ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41h09 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 77.8 bits (190), Expect = 7e-15 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN Sbjct: 824 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 858
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 68.9 bits (167), Expect = 3e-12 Identities = 31/35 (88%), Positives = 33/35 (94%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 KNRNGPA+FPYMLLYPNTSD GAAAG+TAKGIPN Sbjct: 828 KNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPN 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 61.2 bits (147), Expect = 7e-10 Identities = 26/35 (74%), Positives = 31/35 (88%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 KNR GPA FPY L++PNTSD+KGAA G+TA+GIPN Sbjct: 825 KNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPN 859
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 59.3 bits (142), Expect = 3e-09 Identities = 27/35 (77%), Positives = 29/35 (82%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 KNR GP FPY LLYPNTSD KG AAGL+A+GIPN Sbjct: 832 KNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPN 866
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 54.7 bits (130), Expect = 6e-08 Identities = 27/36 (75%), Positives = 27/36 (75%), Gaps = 1/36 (2%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSD-HKGAAAGLTAKGIPN 158 KNRNGP K PYMLLYPNTSD K GLTA GIPN Sbjct: 838 KNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPN 873
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/35 (54%), Positives = 24/35 (68%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +NR GPAK PY LLYP++ + GLT +GIPN Sbjct: 821 RNRYGPAKMPYTLLYPSSEE------GLTFRGIPN 849
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/35 (51%), Positives = 23/35 (65%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +NR GP K PY LLYP++ + GLT +GIPN Sbjct: 834 RNRYGPVKMPYTLLYPSSEE------GLTCRGIPN 862
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 38.9 bits (89), Expect = 0.004 Identities = 18/35 (51%), Positives = 22/35 (62%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 KNR+GP PY LL+P + + GLT KGIPN Sbjct: 827 KNRSGPVNVPYTLLFPTSEE------GLTGKGIPN 855
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 38.5 bits (88), Expect = 0.005 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +NR+GP + PY LLYP++ + GLT +GIPN Sbjct: 829 RNRHGPVEMPYTLLYPSSKE------GLTFRGIPN 857
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/35 (51%), Positives = 21/35 (60%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +NRNGP K PY +L P D GLT +GIPN Sbjct: 829 RNRNGPVKMPYTVLLPTCEDE-----GLTFRGIPN 858
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 36.2 bits (82), Expect = 0.023 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGI 164 +NR GPAK PY LLYP++ + GLT +GI Sbjct: 715 RNRTGPAKMPYTLLYPSSEE------GLTFRGI 741
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 36.2 bits (82), Expect = 0.023 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = -1 Query: 259 NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 NR GP + PY LLYP++ + GLT +GIPN Sbjct: 808 NRLGPVQLPYTLLYPSSEE------GLTFRGIPN 835
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 35.8 bits (81), Expect = 0.030 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -1 Query: 259 NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 NR+GP PY LL+P + GLT KGIPN Sbjct: 830 NRSGPVNAPYTLLFPTSE------GGLTGKGIPN 857
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 35.8 bits (81), Expect = 0.030 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = -1 Query: 259 NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 NR GP + PY LL+PN+ GLT +GIPN Sbjct: 835 NRLGPVQLPYTLLHPNSE-------GLTCRGIPN 861
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 35.8 bits (81), Expect = 0.030 Identities = 17/35 (48%), Positives = 21/35 (60%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +NR GP + PY LL H+ + GLT KGIPN Sbjct: 832 RNRTGPVQLPYTLL------HRSSEEGLTFKGIPN 860
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 35.4 bits (80), Expect = 0.039 Identities = 17/34 (50%), Positives = 19/34 (55%) Frame = -1 Query: 259 NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 NR GP PY LL+P + GLT KGIPN Sbjct: 829 NRTGPVNAPYTLLFPTSE------GGLTGKGIPN 856
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 34.3 bits (77), Expect = 0.086 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 KNR G K PY LL+P++ G+T +GIPN Sbjct: 827 KNRTGLVKMPYTLLFPSSE------GGVTGRGIPN 855
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 33.9 bits (76), Expect = 0.11 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +NR GP + PY LL P++ + GLT +GIPN Sbjct: 825 RNRCGPVQMPYTLLLPSSKE------GLTFRGIPN 853
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 32.3 bits (72), Expect = 0.33 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -1 Query: 259 NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +R GP + PY LL+P++ + GLT +GIPN Sbjct: 833 HRVGPVQLPYTLLHPSSKE------GLTFRGIPN 860
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -1 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 KNR G PY LL P+ + G+T +G+PN Sbjct: 886 KNRCGAGVLPYELLAPS------SPPGVTCRGVPN 914 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,891,848 Number of Sequences: 219361 Number of extensions: 532237 Number of successful extensions: 1177 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1167 length of database: 80,573,946 effective HSP length: 62 effective length of database: 66,973,564 effective search space used: 1607365536 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
