ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, comp... 42 1.1
2gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis tha... 42 1.1
3gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 4.2
4gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosom... 40 4.2
5emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chr... 40 4.2
6emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 i... 40 4.2
7dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 4.2
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
9emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, c... 40 4.2
10dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
11dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
12dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
13emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 40 4.2 
>gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, complete cds
          Length = 1732

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 taacgcgcgcggtaccacaca 224
           |||||||||||||||||||||
Sbjct: 675 taacgcgcgcggtaccacaca 655
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>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 111686

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   acaaaaggatgtagacaaaag 151
             |||||||||||||||||||||
Sbjct: 37480 acaaaaggatgtagacaaaag 37500
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     cagcagtatggatgtaccgt 30
              ||||||||||||||||||||
Sbjct: 938827 cagcagtatggatgtaccgt 938846
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>gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosome 3, complete sequence
          Length = 177109

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tgggtacagttctttattgg 76
             ||||||||||||||||||||
Sbjct: 61035 tgggtacagttctttattgg 61016
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>emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chromosome 11, complete
             sequence
          Length = 101598

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   accaaatggctgtaatttag 260
             ||||||||||||||||||||
Sbjct: 78854 accaaatggctgtaatttag 78835
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>emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 in linkage group 5,
              complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    aacaaaattatgcactgaaa 182
              ||||||||||||||||||||
Sbjct: 125048 aacaaaattatgcactgaaa 125029
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    aggcgatgacgggaacaaaa 169
              ||||||||||||||||||||
Sbjct: 431604 aggcgatgacgggaacaaaa 431623
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 233      gattattcaccaaatggctg 252
                ||||||||||||||||||||
Sbjct: 19193185 gattattcaccaaatggctg 19193166
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>emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, complete sequence
          Length = 152913

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   aacaaaattatgcactgaaa 182
             ||||||||||||||||||||
Sbjct: 71960 aacaaaattatgcactgaaa 71979
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>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full
            insert sequence
          Length = 3612

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gattattcaccaaatggctg 252
            ||||||||||||||||||||
Sbjct: 3415 gattattcaccaaatggctg 3396
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>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full
            insert sequence
          Length = 3581

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gattattcaccaaatggctg 252
            ||||||||||||||||||||
Sbjct: 3461 gattattcaccaaatggctg 3442
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>dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C11, full
            insert sequence
          Length = 1546

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gattattcaccaaatggctg 252
            ||||||||||||||||||||
Sbjct: 1396 gattattcaccaaatggctg 1377
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    gattattcaccaaatggctg 252
              ||||||||||||||||||||
Sbjct: 126707 gattattcaccaaatggctg 126688


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,216,319
Number of Sequences: 3902068
Number of extensions: 3216319
Number of successful extensions: 50957
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50912
Number of HSP's gapped (non-prelim): 45
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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