>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 2       ttttctttgagggaacaaaactt 24
               |||||||||||||||||||||||
Sbjct: 1942075 ttttctttgagggaacaaaactt 1942053

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 2       ttttctttgagggaacaaaactt 24
               |||||||||||||||||||||||
Sbjct: 1942921 ttttctttgagggaacaaaactt 1942899

>ref|NM_166773.1| Drosophila melanogaster CG1909-RB, transcript variant B (CG1909),
            mRNA
          Length = 2339

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 141  atcgtggggcattttcctcccgccgtcgc 169
            |||| |||||||||| |||||||||||||
Sbjct: 1607 atcgcggggcatttttctcccgccgtcgc 1579

>ref|NM_143671.2| Drosophila melanogaster CG1909-RA, transcript variant A (CG1909),
            mRNA
          Length = 2400

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 141  atcgtggggcattttcctcccgccgtcgc 169
            |||| |||||||||| |||||||||||||
Sbjct: 1668 atcgcggggcatttttctcccgccgtcgc 1640

>gb|AC010668.7| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone
             BACR44L03, complete sequence
          Length = 172190

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 141   atcgtggggcattttcctcccgccgtcgc 169
             |||| |||||||||| |||||||||||||
Sbjct: 72940 atcgcggggcatttttctcccgccgtcgc 72912

>gb|AC010576.16| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone
            BACR30L15, complete sequence
          Length = 175192

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 141  atcgtggggcattttcctcccgccgtcgc 169
            |||| |||||||||| |||||||||||||
Sbjct: 6930 atcgcggggcatttttctcccgccgtcgc 6902

>gb|AY051576.1| Drosophila melanogaster GH22690 full length cDNA
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 141  atcgtggggcattttcctcccgccgtcgc 169
            |||| |||||||||| |||||||||||||
Sbjct: 1657 atcgcggggcatttttctcccgccgtcgc 1629

>gb|AE003843.5| Drosophila melanogaster chromosome 4, section 3 of 5 of the complete
              sequence
          Length = 328561

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 141    atcgtggggcattttcctcccgccgtcgc 169
              |||| |||||||||| |||||||||||||
Sbjct: 119269 atcgcggggcatttttctcccgccgtcgc 119241

>gb|AC136008.5| Mus musculus BAC clone RP24-68J1 from 6, complete sequence
          Length = 181220

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 286   tttcactgtacaattgcacaaaaca 310
             |||||||||| ||||||||||||||
Sbjct: 74860 tttcactgtataattgcacaaaaca 74836

>ref|XM_464504.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 ttcctcccgccgtcgccggt 173
           ||||||||||||||||||||
Sbjct: 319 ttcctcccgccgtcgccggt 338

>ref|XM_866806.1| PREDICTED: Bos taurus hypothetical protein LOC615099 (LOC615099),
           mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 287 ttcactgtacaattgcacaa 306
           ||||||||||||||||||||
Sbjct: 262 ttcactgtacaattgcacaa 281

>gb|AC125328.4| Mus musculus BAC clone RP23-181J14 from chromosome 15, complete sequence
          Length = 199674

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      cttttctttgagggaacaaa 20
              ||||||||||||||||||||
Sbjct: 100460 cttttctttgagggaacaaa 100479

>gb|AC115359.5| Mus musculus BAC clone RP23-190K20 from chromosome 2, complete sequence
          Length = 184634

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     cttttctttgagggaacaaa 20
             ||||||||||||||||||||
Sbjct: 68839 cttttctttgagggaacaaa 68820

>gb|AC122298.3| Mus musculus BAC clone RP23-269A11 from 12, complete sequence
          Length = 151332

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     cttttctttgagggaacaaaactt 24
             ||||||| ||||||||||||||||
Sbjct: 50904 cttttctctgagggaacaaaactt 50927

>emb|AL607026.11| Human DNA sequence from clone RP11-498G22 on chromosome 10, complete
              sequence
          Length = 172911

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 277    ttgatttcttttcactgtacaatt 300
              |||||||||| |||||||||||||
Sbjct: 103071 ttgatttcttctcactgtacaatt 103094

>emb|BX883043.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 2/11
          Length = 347664

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      cttttctttgagggaacaaaactt 24
              ||||||| ||||||||||||||||
Sbjct: 241342 cttttctctgagggaacaaaactt 241319

>gb|AC123776.5| Homo sapiens chromosome 8, clone RP11-213I2, complete sequence
          Length = 157633

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    cccatccattgatttctttt 288
              ||||||||||||||||||||
Sbjct: 109859 cccatccattgatttctttt 109878

>gb|AC019205.4| Homo sapiens BAC clone RP11-398K22 from 6, complete sequence
          Length = 198052

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   aaaagataaaaaggtggagt 139
             ||||||||||||||||||||
Sbjct: 54156 aaaagataaaaaggtggagt 54175

>gb|AC024072.5| Homo sapiens chromosome 10 clone RP11-267O2, complete sequence
          Length = 150165

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 277   ttgatttcttttcactgtacaatt 300
             |||||||||| |||||||||||||
Sbjct: 26917 ttgatttcttctcactgtacaatt 26894

>dbj|AK048613.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130087K05 product:unclassifiable, full
           insert sequence
          Length = 2864

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 1   cttttctttgagggaacaaaactt 24
           ||||||| ||||||||||||||||
Sbjct: 437 cttttctctgagggaacaaaactt 460

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 154     ttcctcccgccgtcgccggt 173
               ||||||||||||||||||||
Sbjct: 5577661 ttcctcccgccgtcgccggt 5577642

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 46      atgttcccgaagacatgggc 65
               ||||||||||||||||||||
Sbjct: 1574247 atgttcccgaagacatgggc 1574266

>gb|AC021093.16|AC021093 Homo sapiens chromosome 8 clone RP11-213I2, complete sequence
          Length = 157604

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    cccatccattgatttctttt 288
              ||||||||||||||||||||
Sbjct: 109830 cccatccattgatttctttt 109849

>gb|AC164661.3| Pan troglodytes BAC clone CH251-11F8 from chromosome unknown, complete
              sequence
          Length = 184521

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    aaaagataaaaaggtggagt 139
              ||||||||||||||||||||
Sbjct: 130177 aaaagataaaaaggtggagt 130158

>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0026H03
          Length = 151827

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    ttcctcccgccgtcgccggt 173
              ||||||||||||||||||||
Sbjct: 122396 ttcctcccgccgtcgccggt 122377

>emb|AL928915.24| Mouse DNA sequence from clone RP23-276J8 on chromosome 2, complete
              sequence
          Length = 145879

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      cttttctttgagggaacaaa 20
              ||||||||||||||||||||
Sbjct: 112533 cttttctttgagggaacaaa 112514

>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0419A09
          Length = 168064

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  ttcctcccgccgtcgccggt 173
            ||||||||||||||||||||
Sbjct: 5397 ttcctcccgccgtcgccggt 5378

>gb|AY786992.1| Azospirillum lipoferum nitrogenase subunit NifH (nifH) gene, partial
             cds; DraT (draT), DraG (draG), ArsC, Glutamine
             amidotransferases class-II (YafJ-like), AcpD, nucleoside
             phosphorylase, signal recognition particle GTPase, and
             MiaB (miaB) genes, complete cds; and DapF (dapF) gene,
             partial cds
          Length = 11856

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   cgacggcgccgtccgcaagg 244
             ||||||||||||||||||||
Sbjct: 10021 cgacggcgccgtccgcaagg 10002

>gb|AC133947.3| Mus musculus BAC clone RP24-189I2 from 9, complete sequence
          Length = 168997

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     cttttctttgagggaacaaaactt 24
             ||||||| ||||||||||||||||
Sbjct: 85286 cttttctctgagggaacaaaactt 85309

>gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, complete sequence
          Length = 166555

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     cttttctttgagggaacaaa 20
             ||||||||||||||||||||
Sbjct: 25197 cttttctttgagggaacaaa 25178

>gb|AC151719.3| Mus musculus BAC clone RP23-147H4 from chromosome 5, complete sequence
          Length = 221314

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   tggggcattttcctcccgcc 164
             ||||||||||||||||||||
Sbjct: 26846 tggggcattttcctcccgcc 26827

>gb|AC125212.3| Mus musculus BAC clone RP23-131D6 from chromosome 5, complete sequence
          Length = 215413

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   tggggcattttcctcccgcc 164
             ||||||||||||||||||||
Sbjct: 66417 tggggcattttcctcccgcc 66436

>emb|AL808119.6| Mouse DNA sequence from clone RP23-70J9 on chromosome 2, complete
             sequence
          Length = 228870

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     cttttctttgagggaacaaaactt 24
             ||||||| ||||||||||||||||
Sbjct: 84097 cttttctctgagggaacaaaactt 84074


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,747,876
Number of Sequences: 3902068
Number of extensions: 2747876
Number of successful extensions: 48692
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48576
Number of HSP's gapped (non-prelim): 116
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)