ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41g11 |
|---|---|
| Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 87.0 bits (214), Expect = 1e-17 Identities = 43/48 (89%), Positives = 43/48 (89%), Gaps = 5/48 (10%) Frame = -1 Query: 274 NDPDRKNRHGAGMVPYVLLRPS-----DGDPTDEKMVMEMGIPNSISI 146 NDPDRKNRHGAGMVPYVLLRPS DGDPTDEKMVMEMGIPNSISI Sbjct: 889 NDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 69.7 bits (169), Expect = 2e-12 Identities = 32/42 (76%), Positives = 36/42 (85%) Frame = -1 Query: 271 DPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 D R+NRHGAG+VPYVLLRP +G+P D K VMEMGIPNSISI Sbjct: 891 DDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 43.5 bits (101), Expect = 1e-04 Identities = 24/43 (55%), Positives = 28/43 (65%) Frame = -1 Query: 274 NDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 N+P+ KNR GAG+VPY LL+ P E V GIPNSISI Sbjct: 859 NNPENKNRCGAGIVPYELLK-----PFSEPGVTGRGIPNSISI 896
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 40.0 bits (92), Expect = 0.002 Identities = 19/42 (45%), Positives = 27/42 (64%) Frame = -1 Query: 271 DPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 DP R+NR GAG++PY L+ PS G + G+PNS++I Sbjct: 863 DPSRRNRCGAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = -1 Query: 259 KNRHGAGMVPYVLLRPSDGDPTDEK--MVMEMGIPNSISI 146 KNR+G +PY+LL P+ D T EK + MGIPNSISI Sbjct: 838 KNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 37.7 bits (86), Expect = 0.008 Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -1 Query: 271 DPDRKNRHGAGMVPYVLLRPSDGD-PTDEKMVMEMGIPNSISI 146 DP RKNR G PY LL P+ D D + GIPNSISI Sbjct: 828 DPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 37.7 bits (86), Expect = 0.008 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -1 Query: 274 NDPDRKNRHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 146 +DP+ KNR+G PY+LL P+ D + GIPNSISI Sbjct: 819 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 37.0 bits (84), Expect = 0.013 Identities = 22/42 (52%), Positives = 25/42 (59%) Frame = -1 Query: 271 DPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 D RKNR GAG++PY LL PS V G+PNSISI Sbjct: 882 DHGRKNRCGAGVLPYELLAPS-----SPPGVTCRGVPNSISI 918
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 36.2 bits (82), Expect = 0.022 Identities = 21/38 (55%), Positives = 24/38 (63%) Frame = -1 Query: 259 KNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 KNR GAG+V Y LL+ PT E V MG+P SISI Sbjct: 864 KNRAGAGVVKYELLK-----PTSEHGVTGMGVPYSISI 896
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 35.8 bits (81), Expect = 0.029 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -1 Query: 271 DPDRKNRHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 146 D KNR+G PY+LL P+ D T + GIPNSISI Sbjct: 824 DAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 35.4 bits (80), Expect = 0.038 Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = -1 Query: 271 DPDRKNRHGAGMVPYVLLRP-SDGDPTDEKMVMEMGIPNSISI 146 D KNR GAG++PY L++P SD T MGIPNS SI Sbjct: 905 DRKLKNRCGAGILPYQLMKPFSDAGVTG------MGIPNSTSI 941
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 35.4 bits (80), Expect = 0.038 Identities = 20/42 (47%), Positives = 25/42 (59%) Frame = -1 Query: 271 DPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 D KNR GAG++PY L++ P + V MGIPNS SI Sbjct: 888 DRKLKNRCGAGILPYQLMK-----PFSDSGVTGMGIPNSTSI 924
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 35.0 bits (79), Expect = 0.050 Identities = 20/43 (46%), Positives = 25/43 (58%) Frame = -1 Query: 274 NDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 ND +NRHG +PY LL PS ++ + GIPNSISI Sbjct: 824 NDEKLRNRHGPVEMPYTLLYPS-----SKEGLTFRGIPNSISI 861
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 34.7 bits (78), Expect = 0.065 Identities = 20/43 (46%), Positives = 25/43 (58%) Frame = -1 Query: 274 NDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 ND +NR+G +PY LL PS E+ + GIPNSISI Sbjct: 829 NDESLRNRYGPVKMPYTLLYPS-----SEEGLTCRGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 33.5 bits (75), Expect = 0.15 Identities = 19/42 (45%), Positives = 24/42 (57%) Frame = -1 Query: 271 DPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 D +NR+G +PY LL PS E+ + GIPNSISI Sbjct: 817 DETLRNRYGPAKMPYTLLYPS-----SEEGLTFRGIPNSISI 853
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 32.3 bits (72), Expect = 0.32 Identities = 19/43 (44%), Positives = 24/43 (55%) Frame = -1 Query: 274 NDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 +DP +NR G +PY LL S E+ + GIPNSISI Sbjct: 827 SDPSLRNRTGPVQLPYTLLHRS-----SEEGLTFKGIPNSISI 864
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 32.3 bits (72), Expect = 0.32 Identities = 19/43 (44%), Positives = 24/43 (55%) Frame = -1 Query: 274 NDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 NDP +R G +PY LL PS ++ + GIPNSISI Sbjct: 827 NDPSLYHRVGPVQLPYTLLHPS-----SKEGLTFRGIPNSISI 864
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 32.3 bits (72), Expect = 0.32 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -1 Query: 271 DPDRKNRHGAGMVPYVLLRPSDGDPTD-EKMVMEMGIPNSISI 146 DP KNR G PY L+ P+ D + + GIPNSISI Sbjct: 821 DPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 32.3 bits (72), Expect = 0.32 Identities = 19/38 (50%), Positives = 22/38 (57%) Frame = -1 Query: 259 KNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 KNR G VPY LL P T E+ + GIPNS+SI Sbjct: 827 KNRSGPVNVPYTLLFP-----TSEEGLTGKGIPNSVSI 859
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 32.0 bits (71), Expect = 0.42 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -1 Query: 274 NDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 +D KNR G +PY LL PS E V GIPNS+SI Sbjct: 822 DDETLKNRTGLVKMPYTLLFPS-----SEGGVTGRGIPNSVSI 859
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 31.6 bits (70), Expect = 0.55 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -1 Query: 274 NDPDRK-NRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 NDP + NR G +PY LL PS E+ + GIPNSISI Sbjct: 801 NDPSLQGNRLGPVQLPYTLLYPSS-----EEGLTFRGIPNSISI 839
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 31.6 bits (70), Expect = 0.55 Identities = 19/43 (44%), Positives = 24/43 (55%) Frame = -1 Query: 274 NDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 ND +NR G +PY LL PS ++ + GIPNSISI Sbjct: 820 NDEKLRNRCGPVQMPYTLLLPS-----SKEGLTFRGIPNSISI 857
>UREE_RHOS4 (Q3J156) Urease accessory protein ureE| Length = 182 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -3 Query: 269 PRPEKPTRRRHGAVCAAQAVGR*SHGREDGDGDGHPQQHLHLS 141 PR E P R GA + +G HG G G HP H+H+S Sbjct: 128 PRTE-PFRPEGGAYGHGRTLGH-DHGPAQGHGHDHPHVHVHIS 168
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = -1 Query: 271 DPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 D +NR+G +PY +L P+ +++ + GIPNSISI Sbjct: 825 DSSLRNRNGPVKMPYTVLLPT----CEDEGLTFRGIPNSISI 862
>Y463_CHRVO (Q7P0V2) UPF0341 protein CV_0463| Length = 258 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = -3 Query: 266 RPEKPTRRRHGAVCAAQAVGR*SHGREDGDGDGHP 162 R E T +HGAV A G H RE G G G P Sbjct: 45 RLELLTTGKHGAVYAEFVEGAARHRREQGGGRGQP 79
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 27.7 bits (60), Expect = 8.0 Identities = 17/37 (45%), Positives = 19/37 (51%) Frame = -1 Query: 256 NRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146 NR G PY LL P T E + GIPNS+SI Sbjct: 830 NRSGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 861
>ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex epsilon subunit| 2 (ACDS complex epsilon subunit 2) Length = 170 Score = 27.7 bits (60), Expect = 8.0 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -1 Query: 82 WPGGGYNGNEHQIIIKGHDDIYI 14 WPG NGN II+ GH YI Sbjct: 99 WPGLDGNGNYDTIILLGHKKYYI 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,255,057 Number of Sequences: 219361 Number of extensions: 902633 Number of successful extensions: 2323 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2299 length of database: 80,573,946 effective HSP length: 66 effective length of database: 66,096,120 effective search space used: 1586306880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
