ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y493_MYCBO (P64704) Hypothetical protein Mb0493 32 0.93
2Y483_MYCTU (P64703) Hypothetical protein Rv0483/MT0501 32 0.93
3SYE_PSEPK (Q88LF6) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 30 3.5
4CTBP2_MOUSE (P56546) C-terminal-binding protein 2 (CtBP2) 29 4.6
5CTBP2_HUMAN (P56545) C-terminal-binding protein 2 (CtBP2) 29 4.6
6HIS52_VIBVY (Q7MPP4) Imidazole glycerol phosphate synthase subun... 29 4.6
7CTBP_DROME (O46036) C-terminal-binding protein (CtBP protein) (d... 28 7.9

>Y493_MYCBO (P64704) Hypothetical protein Mb0493|
          Length = 451

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +1

Query: 64  QCQSYHFNIPRYHRHLLREEW*SSK*QVVPLVSNSLVDIIQNFYCSCGSRSIATWEMESH 243
           Q  S HF I R  R +++ E  S + QVV     +   +I +F CS G   +A     + 
Sbjct: 251 QDMSLHFQIGR--RQVVKAEVSSHRIQVV-----TDAGVIMDFPCSYGEADLARNVTRNG 303

Query: 244 ASGITPSYPTFQMESPCTTEPYVH 315
              +T  Y  F M +P     ++H
Sbjct: 304 IHVVTEKYSDFYMSNPAAGYSHIH 327



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>Y483_MYCTU (P64703) Hypothetical protein Rv0483/MT0501|
          Length = 451

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +1

Query: 64  QCQSYHFNIPRYHRHLLREEW*SSK*QVVPLVSNSLVDIIQNFYCSCGSRSIATWEMESH 243
           Q  S HF I R  R +++ E  S + QVV     +   +I +F CS G   +A     + 
Sbjct: 251 QDMSLHFQIGR--RQVVKAEVSSHRIQVV-----TDAGVIMDFPCSYGEADLARNVTRNG 303

Query: 244 ASGITPSYPTFQMESPCTTEPYVH 315
              +T  Y  F M +P     ++H
Sbjct: 304 IHVVTEKYSDFYMSNPAAGYSHIH 327



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>SYE_PSEPK (Q88LF6) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 493

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 130 SSK*QVVPLVSNSLVDIIQNFYCSCGSRSIATWEMESHASGITPSY 267
           S + ++    +  LVD    FYC C +  +     E  A G TP Y
Sbjct: 85  SERGEIYAKYAKELVDAGHAFYCFCTAEELEQMRAEQQARGETPRY 130



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>CTBP2_MOUSE (P56546) C-terminal-binding protein 2 (CtBP2)|
          Length = 445

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 7   DKAADCQLLYRLQTILSLTQCQSYHFNIPRYHRHLLRE 120
           +++   Q +Y LQ +L  + C S H N+  ++ HL+ +
Sbjct: 218 ERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLIND 255



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>CTBP2_HUMAN (P56545) C-terminal-binding protein 2 (CtBP2)|
          Length = 445

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 7   DKAADCQLLYRLQTILSLTQCQSYHFNIPRYHRHLLRE 120
           +++   Q +Y LQ +L  + C S H N+  ++ HL+ +
Sbjct: 218 ERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLIND 255



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>HIS52_VIBVY (Q7MPP4) Imidazole glycerol phosphate synthase subunit hisH2 (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH2) (ImGP synthase
           subunit hisH2) (IGPS subunit hisH2)
          Length = 214

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 227 GKWNLMRPGLRLPILHFKWNLLALQNHTSILEVPERKK*CAEKHTKMWIS 376
           GK   MRPG  L + H  WN L L+   S+ +  +  K     H+ +W++
Sbjct: 106 GKVEYMRPGNDLRVPHVGWNSLILKKENSLFDYLQDDKDFYFVHS-LWVN 154



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>CTBP_DROME (O46036) C-terminal-binding protein (CtBP protein) (dCtBP)|
          Length = 476

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 7   DKAADCQLLYRLQTILSLTQCQSYHFNIPRYHRHLLRE 120
           DK+     +Y LQ +L  + C S H  +  ++ HL+ E
Sbjct: 212 DKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,761,299
Number of Sequences: 219361
Number of extensions: 1492971
Number of successful extensions: 3835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3835
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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