>gb|AC122272.4| Mus musculus BAC clone RP23-225J2 from 6, complete sequence
          Length = 208684

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 61     acacagtgccaatcataccact 82
              ||||||||||||||||||||||
Sbjct: 204609 acacagtgccaatcataccact 204630

>gb|AC155330.3| Mus musculus 6 BAC RP24-146L23 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 215602

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 61    acacagtgccaatcataccact 82
             ||||||||||||||||||||||
Sbjct: 84826 acacagtgccaatcataccact 84847

>emb|CR388384.13| Zebrafish DNA sequence from clone DKEY-22O22 in linkage group 16,
            complete sequence
          Length = 123845

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 352  aaagcatacaaaaatgtggat 372
            |||||||||||||||||||||
Sbjct: 9808 aaagcatacaaaaatgtggat 9828

>emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in linkage group 16,
             complete sequence
          Length = 213678

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 352   aaagcatacaaaaatgtggat 372
             |||||||||||||||||||||
Sbjct: 90545 aaagcatacaaaaatgtggat 90525

>gb|AC132372.4| Mus musculus BAC clone RP23-478B10 from 8, complete sequence
          Length = 178694

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 316   actggaggttccagaaagaaaaaag 340
             |||||||||| ||||||||||||||
Sbjct: 95728 actggaggttgcagaaagaaaaaag 95752

>gb|AC154520.3| Mus musculus BAC clone RP23-471P16 from chromosome 14, complete sequence
          Length = 199186

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tctctaacacagtgccaatc 74
              ||||||||||||||||||||
Sbjct: 106799 tctctaacacagtgccaatc 106780

>gb|AC115044.10| Mus musculus chromosome 3, clone RP24-297E7, complete sequence
          Length = 143527

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   gttgttccacttgtcagtaa 164
             ||||||||||||||||||||
Sbjct: 45411 gttgttccacttgtcagtaa 45392

>gb|AC132919.9| Mus musculus chromosome 12, clone RP24-356H3, complete sequence
          Length = 163965

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 103   aggcacttgctcagggaggagtgg 126
             ||||||||||| ||||||||||||
Sbjct: 37461 aggcacttgctgagggaggagtgg 37438

>ref|XM_973076.1| PREDICTED: Mus musculus similar to actin related protein 2/3
           complex, subunit 5 (LOC383189), mRNA
          Length = 610

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 103 aggcacttgctcagggaggagtgg 126
           ||||||||||| ||||||||||||
Sbjct: 447 aggcacttgctgagggaggagtgg 470

>ref|XM_911478.2| PREDICTED: Mus musculus similar to actin related protein 2/3
           complex, subunit 5 (LOC629364), mRNA
          Length = 1741

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 103 aggcacttgctcagggaggagtgg 126
           ||||||||||| ||||||||||||
Sbjct: 463 aggcacttgctgagggaggagtgg 486

>ref|XM_356911.3| PREDICTED: Mus musculus similar to actin related protein 2/3
           complex, subunit 5 (LOC383189), mRNA
          Length = 610

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 103 aggcacttgctcagggaggagtgg 126
           ||||||||||| ||||||||||||
Sbjct: 447 aggcacttgctgagggaggagtgg 470

>emb|CT005237.2| Pan troglodytes chromosome X clone RP43-058P20 map Xq28, complete
             sequence
          Length = 198450

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    acaggttacaaacaatactt 54
             ||||||||||||||||||||
Sbjct: 59266 acaggttacaaacaatactt 59285

>emb|AL357975.9| Human DNA sequence from clone RP11-72L13 on chromosome 1 Contains the
            3' end of a novel gene (IMAGE:5742758), complete sequence
          Length = 61198

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 374  tctctaaccaagttcttctc 393
            ||||||||||||||||||||
Sbjct: 8952 tctctaaccaagttcttctc 8971

>emb|AL356235.22| Human DNA sequence from clone RP11-142K4 on chromosome Xq13.2-21.1
             Contains a novel gene, the COX7B gene for cytochrome c
             oxidase subunit VIIb, the 5' end of the ATP7A gene for
             Cu++ transporting ATPase alpha polypeptide (Menkes
             syndrome) and two CpG islands, complete sequence
          Length = 69097

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    acaggttacaaacaatactt 54
             ||||||||||||||||||||
Sbjct: 45287 acaggttacaaacaatactt 45268

>emb|AL160256.21| Human DNA sequence from clone RP11-72P19 on chromosome 13 Contains two
             novel pseudogene and part of the SGCG gene for
             sarcoglycan, gamma (35kD dystrophin-associated
             glycoprotein), complete sequence
          Length = 105443

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    ctttctctaacacagtgccaatca 75
             ||||||||| ||||||||||||||
Sbjct: 37147 ctttctctaccacagtgccaatca 37124

>emb|AL118513.17|HSDJ685L9 Human DNA sequence from clone RP4-685L9 on chromosome 20 Contains
           the gene for a novel protein (FLJ90166), the 5' end of a
           nove genel (LOC149773) and two CpG islands, complete
           sequence
          Length = 92835

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 84  caacattccaaggtatcata 103
           ||||||||||||||||||||
Sbjct: 861 caacattccaaggtatcata 842

>emb|AL034407.1|HS657J8 Human DNA sequence from clone RP4-657J8 on chromosome Xq26.1-26.3,
             complete sequence
          Length = 98954

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   acttgctcagggaggagtgg 126
             ||||||||||||||||||||
Sbjct: 70780 acttgctcagggaggagtgg 70799

>emb|CR925945.1| Pongo pygmaeus mRNA; cDNA DKFZp459F1420 (from clone DKFZp459F1420)
          Length = 2282

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 84  caacattccaaggtatcata 103
           ||||||||||||||||||||
Sbjct: 704 caacattccaaggtatcata 685

>dbj|AK124571.1| Homo sapiens cDNA FLJ42580 fis, clone BRACE3008491
          Length = 3681

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   caacattccaaggtatcata 103
            ||||||||||||||||||||
Sbjct: 2170 caacattccaaggtatcata 2151

>dbj|AK123388.1| Homo sapiens cDNA FLJ41394 fis, clone BRCAN2026197
          Length = 3188

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   caacattccaaggtatcata 103
            ||||||||||||||||||||
Sbjct: 1682 caacattccaaggtatcata 1663

>gb|AC026444.5|AC026444 Homo sapiens chromosome 5 clone CTD-2299E8, complete sequence
          Length = 135438

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ccttcctatcctacatttca 278
             ||||||||||||||||||||
Sbjct: 31895 ccttcctatcctacatttca 31876

>gb|AC156459.2| Mus musculus BAC clone RP23-269A9 from chromosome 13, complete sequence
          Length = 188142

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   tacatttcaaatggaatctc 289
             ||||||||||||||||||||
Sbjct: 47882 tacatttcaaatggaatctc 47863

>dbj|AK114416.1| Ciona intestinalis cDNA, clone:cieg001i04, full insert sequence
          Length = 1979

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 124  tggtgatccagtaaatagcaagttgttc 151
            ||||||||||||| |||||| |||||||
Sbjct: 1068 tggtgatccagtatatagcatgttgttc 1041

>gb|AC154219.1| Mus musculus BAC clone RP24-362C22 from 13, complete sequence
          Length = 175346

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   tacatttcaaatggaatctc 289
             ||||||||||||||||||||
Sbjct: 32146 tacatttcaaatggaatctc 32165

>gb|AC132587.5| Mus musculus BAC clone RP24-372N16 from 12, complete sequence
          Length = 181443

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   aggcacttgctcagggaggagtgg 126
             ||||||||||| ||||||||||||
Sbjct: 26005 aggcacttgctgagggaggagtgg 26028

>gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, complete sequence
          Length = 192938

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 103   aggcacttgctcagggaggagtgg 126
             ||||||||||| ||||||||||||
Sbjct: 35944 aggcacttgctgagggaggagtgg 35921


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,579,776
Number of Sequences: 3902068
Number of extensions: 4579776
Number of successful extensions: 82560
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82514
Number of HSP's gapped (non-prelim): 46
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)