ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41g04 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 60.5 bits (145), Expect = 2e-09 Identities = 28/33 (84%), Positives = 29/33 (87%) Frame = -3 Query: 446 AKFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 AKFPYM LYPNTSDH G A GLTA+GIPNSISI Sbjct: 830 AKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 56.2 bits (134), Expect = 4e-08 Identities = 26/33 (78%), Positives = 29/33 (87%) Frame = -3 Query: 446 AKFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 A+FPYM LYPNTSD TG A G+TA+GIPNSISI Sbjct: 834 AEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 53.9 bits (128), Expect = 2e-07 Identities = 24/33 (72%), Positives = 28/33 (84%) Frame = -3 Query: 446 AKFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 A FPY ++PNTSD+ G AEG+TARGIPNSISI Sbjct: 831 ANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/31 (77%), Positives = 25/31 (80%) Frame = -3 Query: 440 FPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 FPY LYPNTSD G A GL+ARGIPNSISI Sbjct: 840 FPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/33 (72%), Positives = 26/33 (78%), Gaps = 1/33 (3%) Frame = -3 Query: 443 KFPYMPLYPNTSDHTGQ-AEGLTARGIPNSISI 348 K PYM LYPNTSD T + +GLTA GIPNSISI Sbjct: 845 KMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 37.0 bits (84), Expect = 0.022 Identities = 20/33 (60%), Positives = 22/33 (66%) Frame = -3 Query: 446 AKFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 AK PY LYP++ EGLT RGIPNSISI Sbjct: 827 AKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 36.2 bits (82), Expect = 0.038 Identities = 19/32 (59%), Positives = 21/32 (65%) Frame = -3 Query: 443 KFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 K PY LYP++ EGLT RGIPNSISI Sbjct: 841 KMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 34.3 bits (77), Expect = 0.14 Identities = 19/32 (59%), Positives = 19/32 (59%) Frame = -3 Query: 443 KFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 K PY L P D EGLT RGIPNSISI Sbjct: 836 KMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 34.3 bits (77), Expect = 0.14 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = -3 Query: 443 KFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 + PY L+PN+ EGLT RGIPNSISI Sbjct: 841 QLPYTLLHPNS-------EGLTCRGIPNSISI 865
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 33.9 bits (76), Expect = 0.19 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = -3 Query: 443 KFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 + PY LYP++ EGLT RGIPNSISI Sbjct: 836 EMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 33.9 bits (76), Expect = 0.19 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = -3 Query: 443 KFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 + PY LYP++ EGLT RGIPNSISI Sbjct: 814 QLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 32.3 bits (72), Expect = 0.55 Identities = 16/24 (66%), Positives = 16/24 (66%) Frame = -3 Query: 419 PNTSDHTGQAEGLTARGIPNSISI 348 P T H EGLT RGIPNSISI Sbjct: 841 PYTLLHPSSKEGLTFRGIPNSISI 864
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 31.2 bits (69), Expect = 1.2 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -3 Query: 419 PNTSDHTGQAEGLTARGIPNSISI 348 P T H EGLT +GIPNSISI Sbjct: 841 PYTLLHRSSEEGLTFKGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -3 Query: 437 PYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 PY L+P + EGLT +GIPNS+SI Sbjct: 836 PYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 443 KFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 K PY L+P++ G+T RGIPNS+SI Sbjct: 834 KMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/32 (53%), Positives = 20/32 (62%) Frame = -3 Query: 443 KFPYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 + PY L P++ EGLT RGIPNSISI Sbjct: 832 QMPYTLLLPSSK------EGLTFRGIPNSISI 857
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = +3 Query: 327 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVERHVWELG 446 T DVL DG VR G +G+SR+V V E+H ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -2 Query: 438 PIHAALPKHLRPHGTGRGAHRQGHPE 361 P H A P L H +G HRQGHPE Sbjct: 235 PTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -2 Query: 438 PIHAALPKHLRPHGTGRGAHRQGHPE 361 P H A P L H +G HRQGHPE Sbjct: 235 PTHPA-PPGLHHHHKHKGQHRQGHPE 259
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 6.0 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -3 Query: 431 MPLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 267 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 266 VCDRELCRCMNN 231 +C+ CM N Sbjct: 115 LCETVRGECMEN 126
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 437 PYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 PY L+P + GLT +GIPNS+SI Sbjct: 837 PYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 437 PYMPLYPNTSDHTGQAEGLTARGIPNSISI 348 PY L+P + GLT +GIPNS+SI Sbjct: 838 PYTLLFPTSEG------GLTGKGIPNSVSI 861
>ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 33) Length = 797 Score = 28.5 bits (62), Expect = 7.9 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Frame = -3 Query: 185 KLSSAGYRSMHRRVQKKSLVLPNNEVDGVMFPPALRCFSSSWQT-------SGIVVIFS 30 KL + GY H R +VL N D + +R F SW SG++V+ S Sbjct: 87 KLLAPGYTETHYRPDGHPVVLSPNHTDHCQYHGRVRGFRESWVVLSTCSGMSGLIVLSS 145 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,992,191 Number of Sequences: 219361 Number of extensions: 1521233 Number of successful extensions: 3900 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3757 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3891 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
