ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
2dbj|AK063403.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
3emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 117 3e-23
4gb|AY110082.1| Zea mays CL50599_1 mRNA sequence 70 7e-09
5emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in ... 46 0.10
6dbj|AP003029.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 46 0.10
7gb|AC121853.3| Mus musculus BAC clone RP24-96P15 from chromosome... 44 0.40
8gb|AC154244.2| Mus musculus BAC clone RP24-321P20 from 17, compl... 44 0.40
9gb|AC099645.11| Mus musculus chromosome 15, clone RP23-426G4, co... 42 1.6
10ref|NM_111250.2| Arabidopsis thaliana binding AT3G03790 transcri... 42 1.6
11ref|NM_202484.1| Arabidopsis thaliana binding AT3G03790 transcri... 42 1.6
12gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, co... 42 1.6
13gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC... 42 1.6
14gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
15gb|AC023192.8| Homo sapiens chromosome 18, clone RP11-562H1, com... 42 1.6
16gb|AC104639.3| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Can... 42 1.6
17gb|AC091198.6| Homo sapiens chromosome 18, clone RP11-258B16, co... 42 1.6
18gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, compl... 42 1.6
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
20dbj|AK117198.1| Arabidopsis thaliana At3g03790 mRNA for unknown ... 42 1.6
21dbj|AB016882.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.6
22gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
23emb|AL845447.3| Mouse DNA sequence from clone RP23-133L20 on chr... 42 1.6
24ref|NM_138421.1| Homo sapiens serum amyloid A-like 1 (SAAL1), mRNA 40 6.2
25gb|AC115026.16| Mus musculus chromosome 1, clone RP24-238A19, co... 40 6.2
26ref|XM_640487.1| Dictyostelium discoideum hypothetical protein (... 40 6.2
27ref|XM_633867.1| Dictyostelium discoideum hypothetical protein (... 40 6.2
28gb|AC151592.2| Nematostella vectensis clone JGIAFIN-297A9, compl... 40 6.2
29ref|XM_521852.1| PREDICTED: Pan troglodytes similar to tryptopha... 40 6.2
30gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
31ref|XM_581261.2| PREDICTED: Bos taurus hypothetical LOC505038 (L... 40 6.2
32ref|XM_871078.1| PREDICTED: Bos taurus hypothetical protein LOC6... 40 6.2
33gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
34gb|AC163484.4| Mus musculus chromosome 1, clone RP23-432C4, comp... 40 6.2
35gb|AC098714.2| Mus musculus BAC clone RP23-2C22 from 7, complete... 40 6.2
36ref|XM_718563.1| Plasmodium yoelii yoelii str. 17XNL antiviral p... 40 6.2
37gb|AC004899.1| Homo sapiens PAC clone RP4-815D20 from 7, complet... 40 6.2
38emb|AL513527.9| Human DNA sequence from clone RP11-530M23 on chr... 40 6.2
39emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4,... 40 6.2
40emb|BX927378.12| Zebrafish DNA sequence from clone CH211-116K3 i... 40 6.2
41gb|AC024563.6| Homo sapiens chromosome 19 clone CTC-451A6, compl... 40 6.2
42gb|AC073544.4| Homo sapiens chromosome 19 clone RP11-359H18, com... 40 6.2
43emb|CR624243.1| full-length cDNA clone CS0DA009YL04 of Neuroblas... 40 6.2
44emb|CR623466.1| full-length cDNA clone CS0DE006YJ05 of Placenta ... 40 6.2
45dbj|AK123457.1| Homo sapiens cDNA FLJ41463 fis, clone BRSTN2017237 40 6.2
46emb|CR616217.1| full-length cDNA clone CS0DH004YC04 of T cells (... 40 6.2
47emb|CR597687.1| full-length cDNA clone CS0DJ006YI14 of T cells (... 40 6.2
48emb|CR590267.1| full-length cDNA clone CS0DJ011YI17 of T cells (... 40 6.2
49gb|AC148317.3| Pan troglodytes BAC clone CH251-519K22 from chrom... 40 6.2
50gb|AC008626.6| Homo sapiens chromosome 19 clone CTB-159G17, comp... 40 6.2
51dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
52gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643... 40 6.2
53gb|AY973566.1| Mycoplasma vulturii strain Gb-V33 16S ribosomal R... 40 6.2
54gb|AC020943.5|AC020943 Homo sapiens chromosome 19 clone LLNLF-10... 40 6.2
55gb|AC102106.14| Mus musculus chromosome 18, clone RP23-92B24, co... 40 6.2
56gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
57gb|BC012010.1| Homo sapiens serum amyloid A-like 1, mRNA (cDNA c... 40 6.2
58emb|AL627391.11| Mouse DNA sequence from clone RP23-198H7 on chr... 40 6.2 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  117 bits (59), Expect = 3e-23
 Identities = 108/122 (88%), Gaps = 3/122 (2%)
 Strand = Plus / Minus

                                                                            
Query: 320      aaatgcctaagaattaacagtcagaagtccacgacataagctgcttgccctggcagtatt 379
                ||||||||||||||||   ||||||| ||  |||||||||||||||||||||| ||  ||
Sbjct: 19143413 aaatgcctaagaattat--gtcagaattctgcgacataagctgcttgccctggtagagtt 19143356

                                                                            
Query: 380      gtccaagtcatcagccaaaaataagatggcataatagaac-taagacaccaacaaatgtt 438
                |||||||||||||||||||||||||||| |||| |||||| ||||  |||||||||||||
Sbjct: 19143355 gtccaagtcatcagccaaaaataagatgacatactagaacttaagtgaccaacaaatgtt 19143296

                  
Query: 439      ga 440
                ||
Sbjct: 19143295 ga 19143294



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                             
Query: 61       ctatagattaaaggaagtacaacatctta 89
                |||||||||||||||||||||||||||||
Sbjct: 19143705 ctatagattaaaggaagtacaacatctta 19143677



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 8        ttcaaatcaaaattttaaaa 27
                ||||||||||||||||||||
Sbjct: 20327266 ttcaaatcaaaattttaaaa 20327285
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>dbj|AK063403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A05, full
            insert sequence
          Length = 2337

 Score =  117 bits (59), Expect = 3e-23
 Identities = 108/122 (88%), Gaps = 3/122 (2%)
 Strand = Plus / Minus

                                                                        
Query: 320  aaatgcctaagaattaacagtcagaagtccacgacataagctgcttgccctggcagtatt 379
            ||||||||||||||||   ||||||| ||  |||||||||||||||||||||| ||  ||
Sbjct: 1985 aaatgcctaagaattat--gtcagaattctgcgacataagctgcttgccctggtagagtt 1928

                                                                        
Query: 380  gtccaagtcatcagccaaaaataagatggcataatagaac-taagacaccaacaaatgtt 438
            |||||||||||||||||||||||||||| |||| |||||| ||||  |||||||||||||
Sbjct: 1927 gtccaagtcatcagccaaaaataagatgacatactagaacttaagtgaccaacaaatgtt 1868

              
Query: 439  ga 440
            ||
Sbjct: 1867 ga 1866



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                         
Query: 61   ctatagattaaaggaagtacaacatctta 89
            |||||||||||||||||||||||||||||
Sbjct: 2277 ctatagattaaaggaagtacaacatctta 2249
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score =  117 bits (59), Expect = 3e-23
 Identities = 108/122 (88%), Gaps = 3/122 (2%)
 Strand = Plus / Minus

                                                                         
Query: 320   aaatgcctaagaattaacagtcagaagtccacgacataagctgcttgccctggcagtatt 379
             ||||||||||||||||   ||||||| ||  |||||||||||||||||||||| ||  ||
Sbjct: 76933 aaatgcctaagaattat--gtcagaattctgcgacataagctgcttgccctggtagagtt 76876

                                                                         
Query: 380   gtccaagtcatcagccaaaaataagatggcataatagaac-taagacaccaacaaatgtt 438
             |||||||||||||||||||||||||||| |||| |||||| ||||  |||||||||||||
Sbjct: 76875 gtccaagtcatcagccaaaaataagatgacatactagaacttaagtgaccaacaaatgtt 76816

               
Query: 439   ga 440
             ||
Sbjct: 76815 ga 76814



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                          
Query: 61    ctatagattaaaggaagtacaacatctta 89
             |||||||||||||||||||||||||||||
Sbjct: 77225 ctatagattaaaggaagtacaacatctta 77197
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>gb|AY110082.1| Zea mays CL50599_1 mRNA sequence
          Length = 821

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 359 gctgcttgccctggcagtattgtccaagtcatcagccaaaaataagatggc 409
           |||||||||||||| ||| ||||||||| |||||||| |||||||||||||
Sbjct: 443 gctgcttgccctggaagtgttgtccaagccatcagccgaaaataagatggc 493



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/38 (92%), Gaps = 2/38 (5%)
 Strand = Plus / Plus

                                                 
Query: 314 tgttagaaatgcctaagaattaaca--gtcagaagtcc 349
           |||||| ||||||||||||||||||  |||||||||||
Sbjct: 388 tgttaggaatgcctaagaattaacaaggtcagaagtcc 425
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>emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in linkage group 24,
             complete sequence
          Length = 166302

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 92    taaatttggtacattaataattt 114
             |||||||||||||||||||||||
Sbjct: 51137 taaatttggtacattaataattt 51115
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>dbj|AP003029.2| Homo sapiens genomic DNA, chromosome 11q, clone:CTC-343F17, complete
              sequence
          Length = 142882

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 11     aaatcaaaattttaaaatcatca 33
              |||||||||||||||||||||||
Sbjct: 125420 aaatcaaaattttaaaatcatca 125442
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>gb|AC121853.3| Mus musculus BAC clone RP24-96P15 from chromosome 17, complete
            sequence
          Length = 144510

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 9    tcaaatcaaaattttaaaatcatcaa 34
            ||||||||||| ||||||||||||||
Sbjct: 4257 tcaaatcaaaaatttaaaatcatcaa 4282
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>gb|AC154244.2| Mus musculus BAC clone RP24-321P20 from 17, complete sequence
          Length = 172093

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 9      tcaaatcaaaattttaaaatcatcaa 34
              ||||||||||| ||||||||||||||
Sbjct: 171250 tcaaatcaaaaatttaaaatcatcaa 171275
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>gb|AC099645.11| Mus musculus chromosome 15, clone RP23-426G4, complete sequence
          Length = 208095

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    caaatcaaaattttaaaatca 30
             |||||||||||||||||||||
Sbjct: 89369 caaatcaaaattttaaaatca 89349
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>ref|NM_111250.2| Arabidopsis thaliana binding AT3G03790 transcript variant
           AT3G03790.1 mRNA, complete cds
          Length = 4023

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 265 tgcttcttttactctagaaga 285
           |||||||||||||||||||||
Sbjct: 851 tgcttcttttactctagaaga 871
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>ref|NM_202484.1| Arabidopsis thaliana binding AT3G03790 transcript variant
           AT3G03790.2 mRNA, complete cds
          Length = 4032

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 265 tgcttcttttactctagaaga 285
           |||||||||||||||||||||
Sbjct: 851 tgcttcttttactctagaaga 871
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>gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, complete sequence
          Length = 211071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     caaatcaaaattttaaaatca 30
              |||||||||||||||||||||
Sbjct: 199486 caaatcaaaattttaaaatca 199506
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>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence,
             complete sequence
          Length = 101410

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   tgcttcttttactctagaaga 285
             |||||||||||||||||||||
Sbjct: 53272 tgcttcttttactctagaaga 53252
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>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06,
              complete sequence
          Length = 135774

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 8      ttcaaatcaaaattttaaaat 28
              |||||||||||||||||||||
Sbjct: 103910 ttcaaatcaaaattttaaaat 103930
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>gb|AC023192.8| Homo sapiens chromosome 18, clone RP11-562H1, complete sequence
          Length = 167944

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     aaatcaaaattttaaaatcat 31
              |||||||||||||||||||||
Sbjct: 135356 aaatcaaaattttaaaatcat 135376
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>gb|AC104639.3| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 187942

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     gttcaaatcaaaattttaaaa 27
             |||||||||||||||||||||
Sbjct: 54258 gttcaaatcaaaattttaaaa 54238
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>gb|AC091198.6| Homo sapiens chromosome 18, clone RP11-258B16, complete sequence
          Length = 173237

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     aaatcaaaattttaaaatcat 31
              |||||||||||||||||||||
Sbjct: 100458 aaatcaaaattttaaaatcat 100438
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>gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, complete sequence
          Length = 170393

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      gttcaaatcaaaattttaaaa 27
              |||||||||||||||||||||
Sbjct: 117727 gttcaaatcaaaattttaaaa 117747
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 8        ttcaaatcaaaattttaaaat 28
                |||||||||||||||||||||
Sbjct: 11649975 ttcaaatcaaaattttaaaat 11649995
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>dbj|AK117198.1| Arabidopsis thaliana At3g03790 mRNA for unknown protein, complete
           cds, clone: RAFL16-74-J10
          Length = 4024

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 265 tgcttcttttactctagaaga 285
           |||||||||||||||||||||
Sbjct: 851 tgcttcttttactctagaaga 871
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>dbj|AB016882.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZA15
          Length = 79995

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 9    tcaaatcaaaattttaaaatc 29
            |||||||||||||||||||||
Sbjct: 2791 tcaaatcaaaattttaaaatc 2771
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 8        ttcaaatcaaaattttaaaat 28
                |||||||||||||||||||||
Sbjct: 11656415 ttcaaatcaaaattttaaaat 11656435
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>emb|AL845447.3| Mouse DNA sequence from clone RP23-133L20 on chromosome X, complete
             sequence
          Length = 105525

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    atcaaaattttaaaatcatca 33
             |||||||||||||||||||||
Sbjct: 41214 atcaaaattttaaaatcatca 41234
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>ref|NM_138421.1| Homo sapiens serum amyloid A-like 1 (SAAL1), mRNA
          Length = 1527

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 caacaaatgttgacttgctg 447
           ||||||||||||||||||||
Sbjct: 613 caacaaatgttgacttgctg 632
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>gb|AC115026.16| Mus musculus chromosome 1, clone RP24-238A19, complete sequence
          Length = 191726

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    aactaagacaccaacaaatg 436
              ||||||||||||||||||||
Sbjct: 119412 aactaagacaccaacaaatg 119431
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>ref|XM_640487.1| Dictyostelium discoideum hypothetical protein (DDB0216877), partial
            mRNA
          Length = 2190

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   aaattttaaaatcatcaagt 36
            ||||||||||||||||||||
Sbjct: 1982 aaattttaaaatcatcaagt 2001
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>ref|XM_633867.1| Dictyostelium discoideum hypothetical protein (DDB0185622), partial
           mRNA
          Length = 882

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  catcttaggtaaatttggta 102
           ||||||||||||||||||||
Sbjct: 792 catcttaggtaaatttggta 811
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>gb|AC151592.2| Nematostella vectensis clone JGIAFIN-297A9, complete sequence
          Length = 40989

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     tcaaatcaaaattttaaaat 28
             ||||||||||||||||||||
Sbjct: 10357 tcaaatcaaaattttaaaat 10338
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>ref|XM_521852.1| PREDICTED: Pan troglodytes similar to tryptophan hydroxylase 1;
            tryptophan 5-monooxygenase; tryptophan hydroxylase
            (tryptophan 5-monooxygenase) (LOC466453), mRNA
          Length = 3222

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 428  caacaaatgttgacttgctg 447
            ||||||||||||||||||||
Sbjct: 1037 caacaaatgttgacttgctg 1056
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>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNAa0068G15, complete sequence
          Length = 130161

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     ttcaaatcaaaattttaaaa 27
             ||||||||||||||||||||
Sbjct: 52646 ttcaaatcaaaattttaaaa 52665
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>ref|XM_581261.2| PREDICTED: Bos taurus hypothetical LOC505038 (LOC505038), mRNA
          Length = 1608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 caacaaatgttgacttgctg 447
           ||||||||||||||||||||
Sbjct: 592 caacaaatgttgacttgctg 611
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>ref|XM_871078.1| PREDICTED: Bos taurus hypothetical protein LOC618752 (LOC618752),
           mRNA
          Length = 546

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 caacaaatgttgacttgctg 447
           ||||||||||||||||||||
Sbjct: 344 caacaaatgttgacttgctg 363
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>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15,
              complete sequence
          Length = 146175

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      ttcaaatcaaaattttaaaa 27
              ||||||||||||||||||||
Sbjct: 138819 ttcaaatcaaaattttaaaa 138838
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>gb|AC163484.4| Mus musculus chromosome 1, clone RP23-432C4, complete sequence
          Length = 193216

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    aactaagacaccaacaaatg 436
              ||||||||||||||||||||
Sbjct: 124071 aactaagacaccaacaaatg 124052
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>gb|AC098714.2| Mus musculus BAC clone RP23-2C22 from 7, complete sequence
          Length = 201178

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 8      ttcaaatcaaaattttaaaatcatcaag 35
              |||||||||||||||||  |||||||||
Sbjct: 163739 ttcaaatcaaaattttagtatcatcaag 163766
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>ref|XM_718563.1| Plasmodium yoelii yoelii str. 17XNL antiviral protein ski2
           (PY03503) partial mRNA
          Length = 4077

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 24  aaaatcatcaagttcaacattata 47
           ||||||||||||||||| ||||||
Sbjct: 924 aaaatcatcaagttcaaaattata 901
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>gb|AC004899.1| Homo sapiens PAC clone RP4-815D20 from 7, complete sequence
          Length = 91125

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    aatcaaaattttaaaatcatcaag 35
             |||||||| |||||||||||||||
Sbjct: 78264 aatcaaaagtttaaaatcatcaag 78241
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>emb|AL513527.9| Human DNA sequence from clone RP11-530M23 on chromosome 6 Contains part
             of the LAMA2 gene for laminin, alpha 2 (merosin,
             congenital muscular dystrophy) (LAMM), complete sequence
          Length = 139123

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 322   atgcctaagaattaacagtcagaa 345
             |||||||||||||| |||||||||
Sbjct: 82540 atgcctaagaattatcagtcagaa 82517
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>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
             complete sequence
          Length = 143301

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     ttcaaatcaaaattttaaaa 27
             ||||||||||||||||||||
Sbjct: 57899 ttcaaatcaaaattttaaaa 57918
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>emb|BX927378.12| Zebrafish DNA sequence from clone CH211-116K3 in linkage group 5,
              complete sequence
          Length = 123661

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    tcccccctcaaacttgatgg 163
              ||||||||||||||||||||
Sbjct: 102925 tcccccctcaaacttgatgg 102906
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>gb|AC024563.6| Homo sapiens chromosome 19 clone CTC-451A6, complete sequence
          Length = 158541

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     aaatcaaaattttaaaatca 30
              ||||||||||||||||||||
Sbjct: 109677 aaatcaaaattttaaaatca 109696
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>gb|AC073544.4| Homo sapiens chromosome 19 clone RP11-359H18, complete sequence
          Length = 177299

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aaatcaaaattttaaaatca 30
             ||||||||||||||||||||
Sbjct: 46874 aaatcaaaattttaaaatca 46893
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>emb|CR624243.1| full-length cDNA clone CS0DA009YL04 of Neuroblastoma of Homo
           sapiens (human)
          Length = 1503

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 caacaaatgttgacttgctg 447
           ||||||||||||||||||||
Sbjct: 627 caacaaatgttgacttgctg 646
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>emb|CR623466.1| full-length cDNA clone CS0DE006YJ05 of Placenta of Homo sapiens
           (human)
          Length = 1484

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 caacaaatgttgacttgctg 447
           ||||||||||||||||||||
Sbjct: 598 caacaaatgttgacttgctg 617
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>dbj|AK123457.1| Homo sapiens cDNA FLJ41463 fis, clone BRSTN2017237
          Length = 1521

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 caacaaatgttgacttgctg 447
           ||||||||||||||||||||
Sbjct: 625 caacaaatgttgacttgctg 644
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>emb|CR616217.1| full-length cDNA clone CS0DH004YC04 of T cells (Jurkat cell line)
           of Homo sapiens (human)
          Length = 1487

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 caacaaatgttgacttgctg 447
           ||||||||||||||||||||
Sbjct: 591 caacaaatgttgacttgctg 610
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>emb|CR597687.1| full-length cDNA clone CS0DJ006YI14 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1487

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 caacaaatgttgacttgctg 447
           ||||||||||||||||||||
Sbjct: 627 caacaaatgttgacttgctg 646
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>emb|CR590267.1| full-length cDNA clone CS0DJ011YI17 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1451

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 caacaaatgttgacttgctg 447
           ||||||||||||||||||||
Sbjct: 579 caacaaatgttgacttgctg 598
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>gb|AC148317.3| Pan troglodytes BAC clone CH251-519K22 from chromosome 7, complete
              sequence
          Length = 154065

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     aatcaaaattttaaaatcatcaag 35
              |||||||| |||||||||||||||
Sbjct: 146892 aatcaaaagtttaaaatcatcaag 146869
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>gb|AC008626.6| Homo sapiens chromosome 19 clone CTB-159G17, complete sequence
          Length = 155439

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aaatcaaaattttaaaatca 30
             ||||||||||||||||||||
Sbjct: 24962 aaatcaaaattttaaaatca 24981
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 8       ttcaaatcaaaattttaaaa 27
               ||||||||||||||||||||
Sbjct: 1920989 ttcaaatcaaaattttaaaa 1921008
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>gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4,
              complete sequence
          Length = 256879

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     aaattttaaaatcatcaagt 36
              ||||||||||||||||||||
Sbjct: 139360 aaattttaaaatcatcaagt 139379
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>gb|AY973566.1| Mycoplasma vulturii strain Gb-V33 16S ribosomal RNA gene, partial
           sequence; 16S-23S ribosomal RNA intergenic spacer,
           complete sequence; and 23S ribosomal RNA gene, partial
           sequence
          Length = 1030

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 9   tcaaatcaaaattttaaaat 28
           ||||||||||||||||||||
Sbjct: 338 tcaaatcaaaattttaaaat 319
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>gb|AC020943.5|AC020943 Homo sapiens chromosome 19 clone LLNLF-108H7, complete sequence
          Length = 37141

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    aaatcaaaattttaaaatca 30
             ||||||||||||||||||||
Sbjct: 11553 aaatcaaaattttaaaatca 11534
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>gb|AC102106.14| Mus musculus chromosome 18, clone RP23-92B24, complete sequence
          Length = 230823

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     aaatcaaaattttaaaatca 30
              ||||||||||||||||||||
Sbjct: 164202 aaatcaaaattttaaaatca 164183
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 8       ttcaaatcaaaattttaaaa 27
               ||||||||||||||||||||
Sbjct: 1918711 ttcaaatcaaaattttaaaa 1918730
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>gb|BC012010.1| Homo sapiens serum amyloid A-like 1, mRNA (cDNA clone MGC:21579
           IMAGE:4473003), complete cds
          Length = 1527

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 caacaaatgttgacttgctg 447
           ||||||||||||||||||||
Sbjct: 613 caacaaatgttgacttgctg 632
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>emb|AL627391.11| Mouse DNA sequence from clone RP23-198H7 on chromosome 4, complete
             sequence
          Length = 156999

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    aaaattttaaaatcatcaag 35
             ||||||||||||||||||||
Sbjct: 11548 aaaattttaaaatcatcaag 11529


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,648,659
Number of Sequences: 3902068
Number of extensions: 4648659
Number of successful extensions: 93217
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92925
Number of HSP's gapped (non-prelim): 286
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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