>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            [Contains: Transforming protein Int-3; Notch 4
            extracellular truncation; Notch 4 intracellular domain]
          Length = 1964

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = -1

Query: 370  CLPKTCHPTGTAGSRRLMNL*Y-----GLVGDACDIASHSRKRERCGN*G 236
            CL + CHP+GTA    L N  Y     G  G  C++     + + C N G
Sbjct: 1006 CLDRPCHPSGTAACHSLANAFYCQCLPGHTGQRCEVEMDLCQSQPCSNGG 1055

>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            (hNotch4) [Contains: Notch 4 extracellular truncation;
            Notch 4 intracellular domain]
          Length = 2003

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = -1

Query: 370  CLPKTCHPTGTAGSRRLMNL*Y-----GLVGDACDI 278
            CL + CHPTGTA    L N  Y     G  G  C++
Sbjct: 1010 CLDQPCHPTGTAACHSLANAFYCQCLPGHTGQWCEV 1045

>PGCB_RAT (P55068) Brevican core protein precursor (Brain-enriched|
           hyaluronan-binding protein) (BEHAB protein) [Contains:
           Brevican core protein isoform 1; Brevican core protein
           isoform 2]
          Length = 883

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -1

Query: 388 APARTHCLPKTCHPTGTA-----GSRRLMNL*YGLVGDACDIASH 269
           AP+   C+P  CH  GT      G R L    YG  GD CD+  H
Sbjct: 620 APSSGDCIPSPCHNGGTCLEEKEGFRCLCVPGYG--GDLCDVGLH 662

>PGCB_MOUSE (Q61361) Brevican core protein precursor|
          Length = 883

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -1

Query: 388 APARTHCLPKTCHPTGTA-----GSRRLMNL*YGLVGDACDIASH 269
           AP+   C+P  CH  GT      G R L    YG  GD CD+  H
Sbjct: 620 APSSGDCIPSPCHNGGTCLEEKEGFRCLCLPGYG--GDLCDVGLH 662

>PGCB_BOVIN (Q28062) Brevican core protein precursor|
          Length = 912

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -1

Query: 388 APARTHCLPKTCHPTGTA-----GSRRLMNL*YGLVGDACDIASH 269
           AP+   C+P  CH  GT      G R L    YG  GD CD+  H
Sbjct: 645 APSSGDCVPSPCHNGGTCLEEEEGVRCLCLPGYG--GDLCDVGLH 687

>SCC3_SCHPO (O13816) Cohesin subunit psc3 (SCC3 homolog)|
          Length = 962

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
 Frame = +1

Query: 37   FWLQCTNLFLVKTNVNNSKSSKPDETKLANCSVSQLFNIRCK--------------LVTH 174
            FW      FL K N  + +  K DETK+ NC ++ + N   K              ++  
Sbjct: 787  FWF-----FLRKDNPADEEKKKDDETKVFNCLINIMNNDSSKILQLQAARTFLETVIMKE 841

Query: 175  G*QNLHKHGGTRLSVKHGVTGPSY 246
            G +  H +   R+S +H    P +
Sbjct: 842  GVKASHYNDDNRVSEEHNFLKPQF 865

>ENV_HV1S3 (P19549) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 852

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 43  LQCTNLFLVKTNVNNSKSSKPDETKLANCSVSQLFNIRCKL 165
           L CT+     TN NNS     ++ ++ NCS +    IR K+
Sbjct: 128 LNCTDYLGNATNTNNSSGGTVEKEEIKNCSFNITTGIRDKV 168

>PIG1_YEAST (Q06216) Serine/threonine-protein phosphatase 1 regulatory subunit|
           PIG1
          Length = 648

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
 Frame = +2

Query: 14  YYQILNHHFG-CNARTFF*SKPMSITPKAQ-NLTKQNWPTVLSLNFSTYDVSWSLMDDKI 187
           Y  I +++FG C          ++   K +   T  NW  +  +N + Y+ S +   D+ 
Sbjct: 211 YEDICSNNFGNCQIWGLIFVNNLNFEKKIEIKFTLNNWADIHYIN-AHYNKSVTPHVDEF 269

Query: 188 YISTEVHAYRLNMVSPALVTTSFSFARVTSNITCISN 298
               ++ A +LN++S  L+ T+F F R T   TC+ N
Sbjct: 270 KFIIDISALKLNLISKNLIYTNF-FERKT---TCLLN 302

>HKR1_HUMAN (P10072) Krueppel-related zinc finger protein 1 (HKR1 protein)|
          Length = 640

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 19  SDFKPSFWLQCTNLFLVKTNVNNSKSSKPDETKLANCSVSQLFNIRCKLVTH 174
           S  KP   L+C   F +K+N+N  + S   E         + F  +  L+TH
Sbjct: 445 SGVKPYVCLECGQCFSLKSNLNKHQRSHTGEKPFVCTECGRGFTRKSTLITH 496

>DPO4_VIBPA (Q87MB4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)|
          Length = 354

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 134 SLNFSTYDVSWSLMDDKIYISTEVHAYRLNMVSP 235
           S N STYD  W ++++K+Y   E    RL   SP
Sbjct: 254 SQNISTYDECWQVIEEKLYPELE---KRLERASP 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,238,653
Number of Sequences: 219361
Number of extensions: 1011172
Number of successful extensions: 2162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2162
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)