ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, comple... 44 0.36
2gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17... 44 0.36
3gb|AF202975.1|AF202975 Ulkenia sp. 18S ribosomal RNA gene, parti... 42 1.4
4gb|AY115845.1| Medicago truncatula auxin influx carrier protein ... 40 5.6
5gb|AC151838.6| Mus musculus BAC clone RP23-226C6 from chromosome... 40 5.6
6dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds 40 5.6
7emb|BX510928.5| Zebrafish DNA sequence from clone DKEY-190G11 in... 40 5.6
8gb|AC109484.2| Homo sapiens chromosome 5 clone RP11-514A16, comp... 40 5.6
9gb|AF482392.1| Dictyostelium discoideum ABC transporter AbcG14 (... 40 5.6
10gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosom... 40 5.6
11gb|AC156794.3| Mus musculus BAC clone RP24-149L24 from chromosom... 40 5.6
12emb|AL365294.4|CNS05TF4 Human chromosome 14 DNA sequence BAC R-7... 40 5.6
13gb|AC174799.2| Mus musculus BAC clone CH25-502A9 from chromosome... 40 5.6 
>gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, complete sequence
          Length = 126582

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 109   gaaacaaaattggccaactgtt 130
             ||||||||||||||||||||||
Sbjct: 18543 gaaacaaaattggccaactgtt 18522
to top
>gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17, complete sequence
          Length = 95855

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 109   gaaacaaaattggccaactgtt 130
             ||||||||||||||||||||||
Sbjct: 95383 gaaacaaaattggccaactgtt 95362
to top
>gb|AF202975.1|AF202975 Ulkenia sp. 18S ribosomal RNA gene, partial sequence
          Length = 367

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 16  ttatcagattttaaaccatcatttt 40
           |||| ||||||||||||||||||||
Sbjct: 180 ttattagattttaaaccatcatttt 204
to top
>gb|AY115845.1| Medicago truncatula auxin influx carrier protein (LAX5) gene,
            complete cds
          Length = 3948

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  agcaatatcacatgcatctc 294
            ||||||||||||||||||||
Sbjct: 1120 agcaatatcacatgcatctc 1139
to top
>gb|AC151838.6| Mus musculus BAC clone RP23-226C6 from chromosome 7, complete sequence
          Length = 222398

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   agacagtgcgtcctggctgg 385
             ||||||||||||||||||||
Sbjct: 23243 agacagtgcgtcctggctgg 23262
to top
>dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds
          Length = 153079

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   ttaccacatctttctctttt 262
             ||||||||||||||||||||
Sbjct: 72182 ttaccacatctttctctttt 72163
to top
>emb|BX510928.5| Zebrafish DNA sequence from clone DKEY-190G11 in linkage group 8,
             complete sequence
          Length = 197947

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   atgacaaaatctacataagc 196
             ||||||||||||||||||||
Sbjct: 74665 atgacaaaatctacataagc 74646
to top
>gb|AC109484.2| Homo sapiens chromosome 5 clone RP11-514A16, complete sequence
          Length = 187174

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   tctgtctctcaacttttcaacata 153
             ||||||||||||||||| ||||||
Sbjct: 51265 tctgtctctcaacttttaaacata 51288
to top
>gb|AF482392.1| Dictyostelium discoideum ABC transporter AbcG14 (abcG14) gene,
            complete cds
          Length = 6664

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   ttttaaaccatcattttggt 43
            ||||||||||||||||||||
Sbjct: 1736 ttttaaaccatcattttggt 1755
to top
>gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosome 7, complete sequence
          Length = 212484

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   agacagtgcgtcctggctgg 385
             ||||||||||||||||||||
Sbjct: 96645 agacagtgcgtcctggctgg 96664
to top
>gb|AC156794.3| Mus musculus BAC clone RP24-149L24 from chromosome 9, complete sequence
          Length = 160212

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 113   caaaattggccaactgttctgtct 136
             |||||||| |||||||||||||||
Sbjct: 77078 caaaattgcccaactgttctgtct 77101
to top
>emb|AL365294.4|CNS05TF4 Human chromosome 14 DNA sequence BAC R-746E9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188478

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 12    tatattatcagattttaaaccatcattt 39
             |||||||||||||||||||  |||||||
Sbjct: 57213 tatattatcagattttaaaaaatcattt 57186
to top
>gb|AC174799.2| Mus musculus BAC clone CH25-502A9 from chromosome 9, complete sequence
          Length = 112760

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 113   caaaattggccaactgttctgtct 136
             |||||||| |||||||||||||||
Sbjct: 86425 caaaattgcccaactgttctgtct 86448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,519,069
Number of Sequences: 3902068
Number of extensions: 3519069
Number of successful extensions: 62578
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62556
Number of HSP's gapped (non-prelim): 22
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top