>MCCA_HUMAN (Q96RQ3) Methylcrotonoyl-CoA carboxylase subunit alpha,|
           mitochondrial precursor (EC 6.4.1.4)
           (3-methylcrotonyl-CoA carboxylase 1) (MCCase alpha
           subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
           subunit alpha) (3-methylcrotonyl-CoA carboxyla
          Length = 725

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 152 GCGLYFRNKHHHRICRSESLLFVGLSPPRLKNLAIMSGRRKI 27
           GCG    N     +C+ E ++F+G  P  ++++ I S  + I
Sbjct: 128 GCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSI 169

>EF2_RAT (P05197) Elongation factor 2 (EF-2)|
          Length = 857

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 33  SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 203
           +A ++ C++   G    +   G ++ DP   +MM+I+K+ PT+   + Y  G V  G   
Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGVVS 421

Query: 204 T 206
           T
Sbjct: 422 T 422

>EF2_PONPY (Q5R8Z3) Elongation factor 2 (EF-2)|
          Length = 857

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 33  SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 203
           +A ++ C++   G    +   G ++ DP   +MM+I+K+ PT+   + Y  G V  G   
Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVS 421

Query: 204 T 206
           T
Sbjct: 422 T 422

>EF2_MOUSE (P58252) Elongation factor 2 (EF-2)|
          Length = 857

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 33  SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 203
           +A ++ C++   G    +   G ++ DP   +MM+I+K+ PT+   + Y  G V  G   
Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGVVS 421

Query: 204 T 206
           T
Sbjct: 422 T 422

>EF2_MESAU (P05086) Elongation factor 2 (EF-2)|
          Length = 857

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 33  SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 203
           +A ++ C++   G    +   G ++ DP   +MM+I+K+ PT+   + Y  G V  G   
Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGVVS 421

Query: 204 T 206
           T
Sbjct: 422 T 422

>EF2_HUMAN (P13639) Elongation factor 2 (EF-2)|
          Length = 857

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 33  SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 203
           +A ++ C++   G    +   G ++ DP   +MM+I+K+ PT+   + Y  G V  G   
Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVS 421

Query: 204 T 206
           T
Sbjct: 422 T 422

>EF2_CRIGR (P09445) Elongation factor 2 (EF-2)|
          Length = 857

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 33  SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 203
           +A ++ C++   G    +   G ++ DP   +MM+I+K+ PT+   + Y  G V  G   
Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGVVS 421

Query: 204 T 206
           T
Sbjct: 422 T 422

>EF2_BOVIN (Q3SYU2) Elongation factor 2 (EF-2)|
          Length = 857

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 33  SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 203
           +A ++ C++   G    +   G ++ DP   +MM+I+K+ PT+   + Y  G V  G   
Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVS 421

Query: 204 T 206
           T
Sbjct: 422 T 422

>EF2_CHICK (Q90705) Elongation factor 2 (EF-2)|
          Length = 857

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 33  SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 203
           +A ++ C++   G    +   G +  DP   +MM+I+K+ PT+   + Y  G V  G   
Sbjct: 362 TAQKYRCELLYEGPPDDEAAIGIKNCDPRGSLMMYISKMVPTSDKGRFYAFGRVFSGLVS 421

Query: 204 T 206
           T
Sbjct: 422 T 422

>CHRD_HUMAN (Q9H2X0) Chordin precursor|
          Length = 955

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -1

Query: 325 GAPWGPR*EAACKI*LSCFLCSCQRRF*FLFPLLAYRFV*VCVHPSCTSP 176
           GA W P  +  C       LC+CQRR     P+       VC  PSC  P
Sbjct: 715 GARWAPNYDPLCS------LCTCQRRTVICDPV-------VCPPPSCPHP 751

>RSMB_PSESM (Q88B41) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 448

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +2

Query: 83  RRTEGIQSDRSYDDVYCENTTHSHLLKELHPRGGTGGVYTYLH-ESVS*KREKKLEPTLA 259
           RR   I+  R  DD+    T    LL  L P    GG+  Y    ++  +    +E  LA
Sbjct: 330 RRHPDIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLA 389

Query: 260 ATKKTRELNFTG 295
            T   REL+  G
Sbjct: 390 RTSGARELDIAG 401

>EF2_CRYPV (Q23716) Elongation factor 2 (EF-2)|
          Length = 832

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 33  SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 203
           +A ++  +    G +  +  KG R  DP   + MF++K+ PT+   + Y  G V  G   
Sbjct: 337 AAQKYRVENLYEGPQDDETAKGIRNCDPDAPLCMFVSKMVPTSDKGRFYAFGRVFSGTVA 396

Query: 204 T 206
           T
Sbjct: 397 T 397

>CHRD_RAT (Q63148) Chordin (Fragment)|
          Length = 176

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -1

Query: 325 GAPWGPR*EAACKI*LSCFLCSCQRRF*FLFPLLAYRFV*VCVHPSCTSP 176
           GA W P  +  C       LC+CQRR     P+       VC  P C+ P
Sbjct: 62  GARWAPNYDPLCS------LCTCQRRTVICDPV-------VCPPPRCSQP 98

>PYRFE_ANASP (Q8YSY4) PyrF/pyrE bifunctional enzyme [Includes: Orotidine|
           5'-phosphate decarboxylase (EC 4.1.1.23) (OMP
           decarboxylase) (OMPDCase) (OMPdecase); Orotate
           phosphoribosyltransferase (EC 2.4.2.10) (OPRT)
           (OPRTase)]
          Length = 477

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 143 LYFRNKHHHRICRSESLLFVGLSPPRLKNLAIMSGR 36
           + F +K H  I +++SLLFVGL P    N  +M GR
Sbjct: 1   MIFFDKLHQNISQNQSLLFVGLDP----NPEMMPGR 32

>CHRD_MOUSE (Q9Z0E2) Chordin precursor|
          Length = 948

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = -1

Query: 325 GAPWGPR*EAACKI*LSCFLCSCQRRF*FLFPLLAYRFV*VCVHPSCTSP 176
           GA W P  +  C       LC CQRR     P+       VC  PSC  P
Sbjct: 711 GARWAPNYDPLCS------LCICQRRTVICDPV-------VCPPPSCPHP 747

>ORN_FRATT (Q5NI61) Oligoribonuclease (EC 3.1.-.-)|
          Length = 178

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 108 TDPMMMFIAKIQPTAIY*KSYILGEVQEGC--THTYTNL 218
           TD  +  IA+ +P AIY    +L  + E C  THT T L
Sbjct: 32  TDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGL 70

>PMA1_DUNAC (P54210) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)|
          Length = 1103

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +2

Query: 128 YCENTTHSHLL---KELHPRGGTGGVYT 202
           +C+ +TH+ +L    E+ PR GT  VYT
Sbjct: 914 FCDYSTHNRVLFFNSEVEPRAGTESVYT 941

>MFP1_LYCES (P93203) MAR binding filament-like protein 1|
          Length = 697

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = -3

Query: 206 SMCTPLLYLPEDVTLLVDG----CGLYFRNKHHHRICRSESLLFVGLSPPRLKNL 54
           S  TPLL  P +  +          ++  N+    +C   S+LFVG S   L NL
Sbjct: 19  SQFTPLLSCPRNTQICRKKRPVMASMHSENQKESNVCNRRSILFVGFSVLPLLNL 73

>TGM5_HUMAN (O43548) Protein-glutamine gamma-glutamyltransferase 5 (EC|
           2.3.2.13) (Transglutaminase-5) (TGase 5)
           (Transglutaminase X) (TGase X) (TGX) (TG(X))
          Length = 719

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -3

Query: 221 LQIRVSMCTPLLYLPEDVTLLVDGCGLYFRNKHHHRICRSESLLFVGLSPPR------LK 60
           L I+V    PL    ED  L V+G GL+          + +  +F+G+  P+      L+
Sbjct: 635 LSIQVIFSNPLSEQVEDCVLTVEGSGLF----------KKQQKVFLGVLKPQHQASIILE 684

Query: 59  NLAIMSGRRKI 27
            +   SG+R+I
Sbjct: 685 TVPFKSGQRQI 695

>INO80_USTMA (Q4PGL2) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1910

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 110 RSYDDVYCENTTHSHLLKELHPRGGTGGVY 199
           RSYD  Y E     HL + +HP   TG  Y
Sbjct: 39  RSYDTAYPEQGYDRHLRERVHPAYTTGPSY 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,498,587
Number of Sequences: 219361
Number of extensions: 1063863
Number of successful extensions: 3096
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3096
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)