>ref|XM_493851.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3145

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 283  atatgatacaaagtacaatttcagcaaaacttcatg 318
            |||||||||| |  ||||||||||||||||||||||
Sbjct: 2831 atatgatacatatgacaatttcagcaaaacttcatg 2796

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 283     atatgatacaaagtacaatttcagcaaaacttcatg 318
               |||||||||| |  ||||||||||||||||||||||
Sbjct: 9722858 atatgatacatatgacaatttcagcaaaacttcatg 9722823

>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete
              sequence
          Length = 165113

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 283    atatgatacaaagtacaatttcagcaaaacttcatg 318
              |||||||||| |  ||||||||||||||||||||||
Sbjct: 143757 atatgatacatatgacaatttcagcaaaacttcatg 143722

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 283     atatgatacaaagtacaatttcagcaaaacttcatg 318
               |||||||||| |  ||||||||||||||||||||||
Sbjct: 9720979 atatgatacatatgacaatttcagcaaaacttcatg 9720944

>dbj|AK072879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146C19, full
            insert sequence
          Length = 3788

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 283  atatgatacaaagtacaatttcagcaaaacttcatg 318
            |||||||||| |  ||||||||||||||||||||||
Sbjct: 3412 atatgatacatatgacaatttcagcaaaacttcatg 3377

>gb|AC090951.1|AC090951 Homo sapiens chromosome 3 clone RP11-488M6 map 3p, complete sequence
          Length = 181394

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 286   tgatacaaagtacaatttcagcaaaa 311
             ||||| ||||||||||||||||||||
Sbjct: 99045 tgatagaaagtacaatttcagcaaaa 99070

>gb|AC090005.1|AC090005 Homo sapiens chromosome 3 clone RP11-9D10 map 3p, complete sequence
          Length = 177626

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 286   tgatacaaagtacaatttcagcaaaa 311
             ||||| ||||||||||||||||||||
Sbjct: 67610 tgatagaaagtacaatttcagcaaaa 67635

>gb|AC066597.4|AC066597 Homo sapiens chromosome 3 clone RP11-488O8 map 3p, complete sequence
          Length = 183607

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 286   tgatacaaagtacaatttcagcaaaa 311
             ||||| ||||||||||||||||||||
Sbjct: 56510 tgatagaaagtacaatttcagcaaaa 56485

>gb|AC068319.4|AC068319 Homo sapiens chromosome 3 clone RP11-470I10 map 3p, complete sequence
          Length = 217456

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 286    tgatacaaagtacaatttcagcaaaa 311
              ||||| ||||||||||||||||||||
Sbjct: 101556 tgatagaaagtacaatttcagcaaaa 101531

>gb|AF096876.1|AF096876 Homo sapiens chromosome 21q22.1 PAC K09209, complete sequence
          Length = 109864

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 178    aaatattgacaatcttaatgaa 199
              ||||||||||||||||||||||
Sbjct: 109542 aaatattgacaatcttaatgaa 109563

>dbj|BS000177.1| Pan troglodytes chromosome 22 clone:PTB-118H03, map 22, complete
              sequences
          Length = 267172

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 178    aaatattgacaatcttaatgaa 199
              ||||||||||||||||||||||
Sbjct: 200797 aaatattgacaatcttaatgaa 200818

>emb|AL928932.14| Mouse DNA sequence from clone RP24-235B14 on chromosome 4, complete
             sequence
          Length = 201761

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 146   gggtattttttctttctcctaa 167
             ||||||||||||||||||||||
Sbjct: 89467 gggtattttttctttctcctaa 89488

>dbj|AP001707.1| Homo sapiens genomic DNA, chromosome 21q, section 51/105
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 178    aaatattgacaatcttaatgaa 199
              ||||||||||||||||||||||
Sbjct: 158010 aaatattgacaatcttaatgaa 158031

>gb|AC090509.2| Homo sapiens chromosome 3 clone RP11-512I22 map 3p, complete sequence
          Length = 166000

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 286    tgatacaaagtacaatttcagcaaaa 311
              ||||| ||||||||||||||||||||
Sbjct: 101557 tgatagaaagtacaatttcagcaaaa 101532

>dbj|AP000884.1| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B463J19, SOD-AML
            region, complete sequence
          Length = 137955

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 178  aaatattgacaatcttaatgaa 199
            ||||||||||||||||||||||
Sbjct: 1321 aaatattgacaatcttaatgaa 1342

>gb|AC127349.3| Mus musculus BAC clone RP23-62M5 from chromosome 13, complete sequence
          Length = 193255

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    tattttttctttctcctaacc 169
              |||||||||||||||||||||
Sbjct: 100476 tattttttctttctcctaacc 100456

>dbj|AB024027.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18B18
          Length = 35896

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 164 ctaaccataacactaaatatt 184
           |||||||||||||||||||||
Sbjct: 676 ctaaccataacactaaatatt 656

>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     cagaacatgctcttccccag 93
              ||||||||||||||||||||
Sbjct: 277168 cagaacatgctcttccccag 277187

>gb|AC166816.2| Mus musculus chromosome 5, clone RP24-321O22, complete sequence
          Length = 156357

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 285    atgatacaaagtacaatttcagcaaaac 312
              ||||||||||| | ||||||||||||||
Sbjct: 106971 atgatacaaagcaaaatttcagcaaaac 106998

>ref|XM_588160.2| PREDICTED: Bos taurus hypothetical LOC510926 (LOC510926), mRNA
          Length = 2098

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 aacacaggggttttcggggg 148
           ||||||||||||||||||||
Sbjct: 837 aacacaggggttttcggggg 818

>gb|AC006662.1| Caenorhabditis elegans fosmid H23L24, complete sequence
          Length = 31491

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   acaatttcagcaaaacttca 316
             ||||||||||||||||||||
Sbjct: 10505 acaatttcagcaaaacttca 10524

>emb|AL137143.8| Human DNA sequence from clone RP11-207N4 on chromosome 13 Contains the
             5' end of a novel gene (CG003, 13CDNA73), a novel gene and
             2 CpG islands, complete sequence
          Length = 155151

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   aactcaatatgatacaaagt 296
             ||||||||||||||||||||
Sbjct: 57941 aactcaatatgatacaaagt 57922

>emb|AL645993.7| Mouse DNA sequence from clone RP23-116K9 on chromosome 11 Contains part
             of a variant of the Sgcd gene for sarcoglycan delta
             (dystrophin-associated glycoprotein), complete sequence
          Length = 123443

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ttttctttctcctaaccata 172
             ||||||||||||||||||||
Sbjct: 34451 ttttctttctcctaaccata 34432

>emb|AL645598.14| Mouse DNA sequence from clone RP23-259J23 on chromosome 11 Contains a
              ribosomal protein S17 (Rps17) pseudogene, complete sequence
          Length = 141141

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 145    ggggtattttttctttctcctaac 168
              |||||||||||| |||||||||||
Sbjct: 100886 ggggtattttttttttctcctaac 100863

>gb|AC154607.2| Mus musculus BAC clone RP23-331D17 from chromosome 16, complete
             sequence
          Length = 202496

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   acatcctcaaaaactgacct 125
             ||||||||||||||||||||
Sbjct: 82670 acatcctcaaaaactgacct 82689

>gb|AC104813.4| Homo sapiens BAC clone RP11-673L23 from 4, complete sequence
          Length = 5539

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  caatcttaatgaaactaatc 206
            ||||||||||||||||||||
Sbjct: 1966 caatcttaatgaaactaatc 1947

>gb|AC012082.6| Homo sapiens chr3 BAC RP11-420O16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 158469

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   ataacactaaatattgacaa 189
             ||||||||||||||||||||
Sbjct: 37961 ataacactaaatattgacaa 37980

>gb|AC020741.4|AC020741 Homo sapiens BAC clone RP11-798L4 from 4, complete sequence
          Length = 191804

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 caatcttaatgaaactaatc 206
           ||||||||||||||||||||
Sbjct: 35  caatcttaatgaaactaatc 54

>gb|AC146534.3| Otolemur garnettii clone CH256-50E17, complete sequence
          Length = 139631

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    cagaacatgctcttccccag 93
             ||||||||||||||||||||
Sbjct: 87662 cagaacatgctcttccccag 87681

>gb|AC069531.9| Homo sapiens 3 BAC RP11-592B18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 63325

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   ataacactaaatattgacaa 189
             ||||||||||||||||||||
Sbjct: 55628 ataacactaaatattgacaa 55647

>gb|AY110025.1| Zea mays CL4222_1 mRNA sequence
          Length = 1024

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 275 tgaactcaatatgatacaaagtacaatttcagcaaaacttcatg 318
           ||||||||||||| |||||  |||| || | |||||||||||||
Sbjct: 733 tgaactcaatatggtacaagatacacttcctgcaaaacttcatg 690

>gb|U73330.1|U73330 Homo sapiens PAC clone 85D2 from 13q12-13q13, complete sequence
          Length = 34931

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  aactcaatatgatacaaagt 296
            ||||||||||||||||||||
Sbjct: 6530 aactcaatatgatacaaagt 6511

>emb|AL935132.13| Mouse DNA sequence from clone RP23-8G23 on chromosome 2, complete
             sequence
          Length = 165444

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 146   gggtattttttctttctcctaaccataa 173
             |||| |||||| ||||||||||||||||
Sbjct: 79484 gggtgttttttttttctcctaaccataa 79511

>emb|AL671867.8| Mouse DNA sequence from clone RP23-131J17 on chromosome 4, complete
              sequence
          Length = 202342

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    tttctttctcctaaccataa 173
              ||||||||||||||||||||
Sbjct: 155855 tttctttctcctaaccataa 155874


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,555,835
Number of Sequences: 3902068
Number of extensions: 3555835
Number of successful extensions: 71812
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71680
Number of HSP's gapped (non-prelim): 132
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)