ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41f05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197030.1| Oryza sativa (japonica cultivar-group) putative homeodomain leucine zipper protein (OSJNBa0093B11.11), mRNA Length = 2523 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 2523 tcacacgaaggaccagttgacgaagca 2497
>gb|BT017368.1| Zea mays clone EL01N0324G08.c mRNA sequence Length = 1236 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 930 tcacacgaaggaccagttgacgaagca 904
>gb|AY501430.1| Zea mays rolled leaf1 mRNA, complete cds Length = 2700 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 2595 tcacacgaaggaccagttgacgaagca 2569
>gb|AY554037.1| Oryza sativa (japonica cultivar-group) clone S10307 Hox9 (hox9) mRNA, partial cds Length = 562 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 201 tcacacgaaggaccagttgacgaagca 175
>gb|AY423716.1| Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox9 mRNA, complete cds Length = 3174 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 2804 tcacacgaaggaccagttgacgaagca 2778
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 97451 tcacacgaaggaccagttgacgaagca 97477
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 17577180 tcacacgaaggaccagttgacgaagca 17577154
>dbj|AK102830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109G06, full insert sequence Length = 3000 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 2651 tcacacgaaggaccagttgacgaagca 2625
>dbj|AK102603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098N12, full insert sequence Length = 3227 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 2875 tcacacgaaggaccagttgacgaagca 2849
>dbj|AK061741.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E12, full insert sequence Length = 1481 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 1213 tcacacgaaggaccagttgacgaagca 1187
>gb|AY109371.1| Zea mays CL4357_1 mRNA sequence Length = 1102 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 721 tcacacgaaggaccagttgacgaagca 695
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaagca 417 ||||||||||||||||||||||||||| Sbjct: 17586220 tcacacgaaggaccagttgacgaagca 17586194
>gb|DQ013803.1| Phyllostachys praecox HB1 mRNA, partial cds Length = 2623 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 390 atcacacgaaggaccagttgacgaagca 417 |||||||||| ||||||||||||||||| Sbjct: 2477 atcacacgaaagaccagttgacgaagca 2450
>gb|AY105765.1| Zea mays PCO144112 mRNA sequence Length = 1851 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaa 414 |||||||||||||||||||||||| Sbjct: 1645 tcacacgaaggaccagttgacgaa 1622
>gb|AC138318.7| Mus musculus chromosome 3, clone RP23-358I23, complete sequence Length = 201126 Score = 46.1 bits (23), Expect = 0.091 Identities = 23/23 (100%) Strand = Plus / Minus Query: 31 gtgacattttgaaatatgtttaa 53 ||||||||||||||||||||||| Sbjct: 122054 gtgacattttgaaatatgtttaa 122032
>gb|AC078986.20| Homo sapiens 3q BAC RP11-138N21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166518 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 42 aaatatgtttaaacacattttagaaaccag 71 ||||||||||||| |||||||| ||||||| Sbjct: 131689 aaatatgtttaaaaacattttaaaaaccag 131660
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 acattttgaaatatgtttaaac 55 |||||||||||||||||||||| Sbjct: 29039826 acattttgaaatatgtttaaac 29039805
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17 Length = 180015 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 acattttgaaatatgtttaaac 55 |||||||||||||||||||||| Sbjct: 157363 acattttgaaatatgtttaaac 157342
>gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, complete sequence Length = 168316 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatctg 114 ||||||||||||||||||||| Sbjct: 63943 atgcatgcatgcatctatctg 63923
>gb|AC131663.3| Mus musculus BAC clone RP23-258B18 from 6, complete sequence Length = 191685 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 attttgaaatatgtttaaaca 56 ||||||||||||||||||||| Sbjct: 116083 attttgaaatatgtttaaaca 116103
>gb|AC098890.3| Mus musculus BAC clone RP23-122P22 from X, complete sequence Length = 202740 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 atgggcaccaagcaaacacat 215 ||||||||||||||||||||| Sbjct: 10096 atgggcaccaagcaaacacat 10116
>emb|AL357833.16| Human DNA sequence from clone RP11-482E14 on chromosome 10 Contains two novel genes and a CpG island, complete sequence Length = 178563 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 tgacattttgaaatatgttta 52 ||||||||||||||||||||| Sbjct: 86128 tgacattttgaaatatgttta 86108
>emb|AL162457.11| Human DNA sequence from clone RP11-429E11 on chromosome 20 Contains parts of the CDH4 gene for retinal cadherin 4 type 1 (R-cadherin), a novel gene, the gene for a novel protien (FLJ40547) and a CpG island, complete sequence Length = 130965 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 gatgcatgcatgcatctatct 113 ||||||||||||||||||||| Sbjct: 99910 gatgcatgcatgcatctatct 99930
>gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, complete sequence Length = 167209 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 atgcatgcatgcatctatctg 114 ||||||||||||||||||||| Sbjct: 77391 atgcatgcatgcatctatctg 77411
>gb|AC090160.6| Homo sapiens chromosome 11, clone RP11-413N10, complete sequence Length = 170008 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 acattttgaaatatgtttaaa 54 ||||||||||||||||||||| Sbjct: 145563 acattttgaaatatgtttaaa 145583
>gb|AC100875.3| Homo sapiens chromosome 11, clone RP11-715M10, complete sequence Length = 195097 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 acattttgaaatatgtttaaa 54 ||||||||||||||||||||| Sbjct: 99722 acattttgaaatatgtttaaa 99702
>gb|AC163035.2| Mus musculus BAC clone RP23-301L2 from chromosome 6, complete sequence Length = 196798 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 attttgaaatatgtttaaaca 56 ||||||||||||||||||||| Sbjct: 186502 attttgaaatatgtttaaaca 186482
>gb|AC156949.9| Mus musculus 10 BAC RP24-347J14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 149183 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatctg 114 ||||||||||||||||||||| Sbjct: 66647 atgcatgcatgcatctatctg 66627
>gb|M37937.1|RATAMPD06 Rattus norvegicus adenosine monophosphate deaminase 1 (AMPD1) gene, exon 6 Length = 886 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 atgcatgcatgcatctatctg 114 ||||||||||||||||||||| Sbjct: 691 atgcatgcatgcatctatctg 711
>dbj|AB158476.1| Streptomyces sp. FERM BP-5809 clac gene for cyclic lipopeptide acylase small and large subunits, complete cds Length = 5692 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 358 gcaccaccggccggccccgcggcat 382 ||||||||||||| ||||||||||| Sbjct: 5033 gcaccaccggccgcccccgcggcat 5009
>gb|AC153824.9| Mus musculus 10 BAC RP23-53D13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 233119 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatctg 114 ||||||||||||||||||||| Sbjct: 183000 atgcatgcatgcatctatctg 182980
>emb|CR855880.13| Zebrafish DNA sequence from clone DKEY-215C14 in linkage group 17, complete sequence Length = 115843 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 gacattttgaaatatgtttaa 53 ||||||||||||||||||||| Sbjct: 38146 gacattttgaaatatgtttaa 38126
>gb|AC147235.3| Mus musculus BAC clone RP23-353B7 from 6, complete sequence Length = 193668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 attttgaaatatgtttaaaca 56 ||||||||||||||||||||| Sbjct: 114660 attttgaaatatgtttaaaca 114680
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 atatgtttaaacacattttagaaac 68 ||||||| ||||||||||||||||| Sbjct: 3596400 atatgttgaaacacattttagaaac 3596376
>emb|AL669958.14| Mouse DNA sequence from clone RP23-213K6 on chromosome X, complete sequence Length = 195411 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 atgggcaccaagcaaacacat 215 ||||||||||||||||||||| Sbjct: 77022 atgggcaccaagcaaacacat 77042
>gb|AC166114.5| Mus musculus BAC clone RP23-63J20 from chromosome 16, complete sequence Length = 207146 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 acattttgaaatatgtttaa 53 |||||||||||||||||||| Sbjct: 93358 acattttgaaatatgtttaa 93339
>gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, complete sequence Length = 174156 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 agatgcatgcatgcatctat 111 |||||||||||||||||||| Sbjct: 140355 agatgcatgcatgcatctat 140336
>gb|AC104203.11| Mus musculus chromosome 5, clone RP24-301M6, complete sequence Length = 174779 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 tgaaatatgtttaaacacatttta 63 |||||||||||||| ||||||||| Sbjct: 163531 tgaaatatgtttaatcacatttta 163508
>gb|AC116727.9| Mus musculus chromosome 3, clone RP23-290J2, complete sequence Length = 163945 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 69778 atgcatgcatgcatctatct 69797
>ref|XM_468564.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2574 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaa 414 |||||| ||||||||||||||||| Sbjct: 2574 tcacacaaaggaccagttgacgaa 2551
>gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosome 6, complete sequence Length = 211910 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 78636 atgcatgcatgcatctatct 78617
>gb|AY554035.1| Oryza sativa (indica cultivar-group) clone OC03C08 Hox10 (hox10) mRNA, partial cds Length = 625 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaa 414 |||||| ||||||||||||||||| Sbjct: 335 tcacacaaaggaccagttgacgaa 312
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 17205804 atgcatgcatgcatctatct 17205785 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaa 414 |||||| ||||||||||||||||| Sbjct: 535911 tcacacaaaggaccagttgacgaa 535888
>gb|AC099704.7| Mus musculus chromosome 15, clone RP23-256A2, complete sequence Length = 204704 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 126209 atgcatgcatgcatctatct 126228 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 126128 atgcatgcatgcatctatct 126147
>gb|AC117690.10| Mus musculus chromosome 16, clone RP23-446I8, complete sequence Length = 189033 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 acattttgaaatatgtttaa 53 |||||||||||||||||||| Sbjct: 156238 acattttgaaatatgtttaa 156219
>gb|AC123818.4| Mus musculus BAC clone RP24-266A12 from chromosome 18, complete sequence Length = 169506 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 agaggccgtggatgtagcat 153 |||||||||||||||||||| Sbjct: 112034 agaggccgtggatgtagcat 112053
>gb|AC124683.3| Mus musculus BAC clone RP24-349E11 from chromosome 6, complete sequence Length = 168179 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 84618 atgcatgcatgcatctatct 84599
>gb|AC131773.3| Mus musculus BAC clone RP24-308A19 from chromosome 15, complete sequence Length = 168423 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 13254 atgcatgcatgcatctatct 13235 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 13173 atgcatgcatgcatctatct 13154
>gb|AC123836.4| Mus musculus BAC clone RP23-367G3 from chromosome 15, complete sequence Length = 179575 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ttagaaaccaggagaacata 80 |||||||||||||||||||| Sbjct: 37308 ttagaaaccaggagaacata 37289
>gb|AY425991.1| Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds Length = 3252 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaa 414 |||||| ||||||||||||||||| Sbjct: 2930 tcacacaaaggaccagttgacgaa 2907
>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete sequence Length = 115326 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 38548 atgcatgcatgcatctatct 38529
>gb|AC158150.9| Mus musculus chromosome 5, clone RP23-173B13, complete sequence Length = 227131 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 tgaaatatgtttaaacacatttta 63 |||||||||||||| ||||||||| Sbjct: 6504 tgaaatatgtttaatcacatttta 6481
>emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081 Length = 340000 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 atgtttaaacacattttaga 65 |||||||||||||||||||| Sbjct: 265499 atgtttaaacacattttaga 265480
>emb|AL365181.24| Human DNA sequence from clone RP11-284F21 on chromosome 1 Contains the 5' end of the MEF2D gene for MADS box transcription enhancer factor 2 polypeptide D (myocyte enhancer factor 2D), the IQGAP3 gene for IQ motif containing GTPase activating protein 3, a novel gene, the APOA1BP gene for apolipoprotein A-I binding protein, a novel gene (FLJ20249), a novel gene, the gene for brain link protein-1 (BRAL1), a novel gene, the 5' end of the BCAN gene for brevican, the 3' end of a novel gene and three CpG islands, complete sequence Length = 164512 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 acattttgaaatatgtttaa 53 |||||||||||||||||||| Sbjct: 137266 acattttgaaatatgtttaa 137247
>gb|AC144703.2| Danio rerio clone CH211-152B23, complete sequence Length = 49684 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gtcaaaatcttgtgacattt 39 |||||||||||||||||||| Sbjct: 44699 gtcaaaatcttgtgacattt 44680
>gb|AF549808.1| Ralstonia eutropha intracellular PHB depolymerase PhaZ2 (phaZ2) gene, complete cds Length = 3294 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tcacgcaccaccggccggcc 373 |||||||||||||||||||| Sbjct: 1538 tcacgcaccaccggccggcc 1557
>emb|CR354557.9| Zebrafish DNA sequence from clone DKEY-34I7 in linkage group 23, complete sequence Length = 127420 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 86122 atgcatgcatgcatctatct 86141
>emb|AL646088.23| Mouse DNA sequence from clone RP23-58E13 on chromosome 11 Contains the genes for three novel proteins (MOR256-22, MOR256-23 and MOR256-26), five genes for novel proteins similar to the olfactory receptor family MOR256, a ribosomal protein S28 (Rps28) pseudogene, the Flt4 gene for FMS-like tyrosine kinase 4 and two CpG islands, complete sequence Length = 211330 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 100053 atgcatgcatgcatctatct 100034
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 97197 atgcatgcatgcatctatct 97178
>emb|BX279525.12| Zebrafish DNA sequence from clone CH211-244C18 in linkage group 12, complete sequence Length = 173914 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 atgtttaaacacattttaga 65 |||||||||||||||||||| Sbjct: 63216 atgtttaaacacattttaga 63235
>emb|BX629343.11| Zebrafish DNA sequence from clone DKEY-66M17 in linkage group 13, complete sequence Length = 207677 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aaatatgtttaaacacattt 61 |||||||||||||||||||| Sbjct: 161331 aaatatgtttaaacacattt 161350
>gb|AC161059.4| Mus musculus BAC clone RP23-82L9 from chromosome 6, complete sequence Length = 294389 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 156355 atgcatgcatgcatctatct 156336
>gb|AF520602.1| Esox lucius clone PikeB451 microsatellite sequence Length = 524 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 228 atgcatgcatgcatctatct 247
>gb|AC020923.9| Homo sapiens chromosome 5 clone CTD-2123J17, complete sequence Length = 159973 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 aatatgtttaaacacatttt 62 |||||||||||||||||||| Sbjct: 41420 aatatgtttaaacacatttt 41401
>gb|AC069224.16| Homo sapiens 3 BAC RP11-16N11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164941 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tgtgacattttgaaatatgt 49 |||||||||||||||||||| Sbjct: 138413 tgtgacattttgaaatatgt 138394
>emb|BX470186.11| Zebrafish DNA sequence from clone DKEY-52I22 in linkage group 18, complete sequence Length = 131089 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gtcaaaatcttgtgacattt 39 |||||||||||||||||||| Sbjct: 7254 gtcaaaatcttgtgacattt 7273
>emb|BX248392.16| Zebrafish DNA sequence from clone CH211-220F12 in linkage group 18, complete sequence Length = 183594 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gtcaaaatcttgtgacattt 39 |||||||||||||||||||| Sbjct: 160825 gtcaaaatcttgtgacattt 160806
>gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-301H20, complete sequence Length = 213462 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 49881 atgcatgcatgcatctatct 49900
>gb|AC068627.16| Mus Musculus Chromosome 5 RP23-389F6, complete sequence Length = 180673 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 171669 atgcatgcatgcatctatct 171688
>gb|AC107918.5| Homo sapiens chromosome 8, clone RP11-481A20, complete sequence Length = 150507 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 tgaaatatgtttaaacacatttta 63 |||||||| ||||||||||||||| Sbjct: 125140 tgaaatatttttaaacacatttta 125117
>dbj|AB236345.1| Cyanoramphus forbesi DNA, microsatellite locus Cfor1213 Length = 257 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 46 atgcatgcatgcatctatct 65
>gb|AC106847.3| Homo sapiens chromosome 8, clone CTD-2333A6, complete sequence Length = 135431 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 tgaaatatgtttaaacacatttta 63 |||||||| ||||||||||||||| Sbjct: 25897 tgaaatatttttaaacacatttta 25920
>gb|AF064862.2| Homo sapiens chromosome 21 clone PAC 31P10 map 21q22.3, complete sequence Length = 145861 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 atgtttaaacacattttaga 65 |||||||||||||||||||| Sbjct: 111308 atgtttaaacacattttaga 111289
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 caccggccggccccgcggca 381 |||||||||||||||||||| Sbjct: 3613123 caccggccggccccgcggca 3613142
>gb|AF003387.1| Caenorhabditis elegans cosmid C44B11, complete sequence Length = 35303 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ttttgaaatatgtttaaaca 56 |||||||||||||||||||| Sbjct: 18487 ttttgaaatatgtttaaaca 18506
>gb|AC016550.6| Homo sapiens chromosome 5 clone CTC-261N6, complete sequence Length = 88581 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 aatatgtttaaacacatttt 62 |||||||||||||||||||| Sbjct: 17104 aatatgtttaaacacatttt 17123
>gb|AC153881.4| Mus musculus 10 BAC RP23-257B9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208992 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 tgaaatatgtttaaacacat 59 |||||||||||||||||||| Sbjct: 150419 tgaaatatgtttaaacacat 150400
>gb|AC159476.5| Mus musculus 10 BAC RP23-53O16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 212483 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 tgaaatatgtttaaacacat 59 |||||||||||||||||||| Sbjct: 159440 tgaaatatgtttaaacacat 159459
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 17199373 atgcatgcatgcatctatct 17199354 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaa 414 |||||| ||||||||||||||||| Sbjct: 535909 tcacacaaaggaccagttgacgaa 535886
>gb|AC130366.5| Homo sapiens chromosome 8, clone RP11-1236K1, complete sequence Length = 178000 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 tgaaatatgtttaaacacatttta 63 |||||||| ||||||||||||||| Sbjct: 166448 tgaaatatttttaaacacatttta 166471
>gb|AC079183.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-258N2, complete sequence Length = 170233 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 13725 atgcatgcatgcatctatct 13706
>emb|BX255879.6| Zebrafish DNA sequence from clone CH211-232P17 in linkage group 18, complete sequence Length = 173755 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 taaacacattttagaaacca 70 |||||||||||||||||||| Sbjct: 85710 taaacacattttagaaacca 85729
>dbj|AK102378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091P14, full insert sequence Length = 3252 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaa 414 |||||| ||||||||||||||||| Sbjct: 2930 tcacacaaaggaccagttgacgaa 2907
>gb|AC122122.14| Mus musculus chromosome 1, clone RP23-15D21, complete sequence Length = 204416 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 agatgcatgcatgcatctat 111 |||||||||||||||||||| Sbjct: 28414 agatgcatgcatgcatctat 28395
>emb|AL928692.9| Zebrafish DNA sequence from clone CH211-208D15 in linkage group 12, complete sequence Length = 215891 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 atgtttaaacacattttaga 65 |||||||||||||||||||| Sbjct: 207301 atgtttaaacacattttaga 207282
>dbj|AK059498.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-H11, full insert sequence Length = 1573 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 tcacacgaaggaccagttgacgaa 414 |||||| ||||||||||||||||| Sbjct: 1267 tcacacaaaggaccagttgacgaa 1244
>gb|AY110154.1| Zea mays CL11010_3 mRNA sequence Length = 627 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 tcacacgaaggaccagttgacgaa 414 |||||||||||||||||| ||||| Sbjct: 237 tcacacgaaggaccagttcacgaa 260
>emb|AL954232.2|RP43039B12 Pan troglodytes chromosome 22 BAC RP43-039B12, complete sequence Length = 201761 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 atgtttaaacacattttaga 65 |||||||||||||||||||| Sbjct: 4317 atgtttaaacacattttaga 4298
>emb|AL954230.2|RP43035C13 Pan troglodytes chromosome 22 BAC RP43-035C13, complete sequence Length = 157305 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 atgtttaaacacattttaga 65 |||||||||||||||||||| Sbjct: 37879 atgtttaaacacattttaga 37860
>emb|AL954229.2|PTB103H04 Pan troglodytes chromosome 22 BAC PTB-103H04, complete sequence Length = 187866 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 atgtttaaacacattttaga 65 |||||||||||||||||||| Sbjct: 183993 atgtttaaacacattttaga 183974
>dbj|AP001677.1| Homo sapiens genomic DNA, chromosome 21q, section 21/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgcatgcatgcatctatct 113 |||||||||||||||||||| Sbjct: 241248 atgcatgcatgcatctatct 241229
>gb|AF064865.1|AF064865 Homo sapiens chromosome 21q22.3 PAC 58D10, complete sequence Length = 159424 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 atgtttaaacacattttaga 65 |||||||||||||||||||| Sbjct: 30133 atgtttaaacacattttaga 30114
>gb|AC105733.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0043C10, complete sequence Length = 108688 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 tcacacgaaggaccagttgacgaa 414 |||||| ||||||||||||||||| Sbjct: 80007 tcacacaaaggaccagttgacgaa 80030 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,938,339 Number of Sequences: 3902068 Number of extensions: 3938339 Number of successful extensions: 93852 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93256 Number of HSP's gapped (non-prelim): 596 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
