ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41f04 |
|---|---|
| Clone Library Name | barley_pub |
>LEG_ANTCR (P22031) D-galactoside-specific lectin (Sea urchin egg lectin)| (SUEL) Length = 105 Score = 42.4 bits (98), Expect = 3e-04 Identities = 18/32 (56%), Positives = 20/32 (62%) Frame = -1 Query: 345 GNSECTISVSNDIFGDPCPRVVKDLAVEAECS 250 G S CT+ SN +FGDPCP K LAV CS Sbjct: 72 GKSSCTVLASNSVFGDPCPGTAKYLAVTYICS 103
>LPHN3_HUMAN (Q9HAR2) Latrophilin-3 precursor (Calcium-independent| alpha-latrotoxin receptor 3) (Lectomedin-3) Length = 1447 Score = 41.2 bits (95), Expect = 6e-04 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = -1 Query: 339 SECTISVSNDIFGDPCPRVVKDLAVEAECSPSSATKEARDEM*CGILVTSWCKGAFRSIH 160 ++C + D+F DPCP K L V+ EC P ++ L KG ++S H Sbjct: 95 TQCAVVAGPDVFPDPCPGTYKYLEVQYECVPYKVEQKV-------FLCPGLLKGVYQSEH 147 Query: 159 -----SCSWCWCKD 133 S WCKD Sbjct: 148 LFESDHQSGAWCKD 161
>LPHN3_BOVIN (O97827) Latrophilin-3 precursor| Length = 1580 Score = 41.2 bits (95), Expect = 6e-04 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = -1 Query: 339 SECTISVSNDIFGDPCPRVVKDLAVEAECSPSSATKEARDEM*CGILVTSWCKGAFRSIH 160 ++C + D+F DPCP K L V+ EC P ++ L KG ++S H Sbjct: 163 TQCAVVAGPDVFPDPCPGTYKYLEVQYECVPYKVEQKV-------FLCPGLLKGVYQSEH 215 Query: 159 -----SCSWCWCKD 133 S WCKD Sbjct: 216 LFESDHQSGAWCKD 229
>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 832 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = -1 Query: 345 GNSECTISVSNDIFG-DPCPRVVKDLAVEAEC 253 G C+++V+ ++FG DPCP +K LAVEA C Sbjct: 800 GQEFCSVNVAPEVFGGDPCPGTMKKLAVEAIC 831
>LPHN2_RAT (O88923) Latrophilin-2 precursor (Calcium-independent| alpha-latrotoxin receptor 2) (CIRL-2) Length = 1487 Score = 36.2 bits (82), Expect = 0.021 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%) Frame = -1 Query: 339 SECTISVSNDIFGDPCPRVVKDLAVEAECSPSSATKEARDEM*CGILVTSWCKGAFRSI- 163 ++C + +D+F DPCP K L V+ EC P K + V C G ++I Sbjct: 101 TQCVVVTGSDVFPDPCPGTYKYLEVQYECVPYMEQK---------VFV---CPGTLKAIV 148 Query: 162 --------HSCSWCWCKD 133 + WCKD Sbjct: 149 DSPSIYEAEQKAGAWCKD 166
>LPHN2_BOVIN (O97817) Latrophilin-2 precursor (Calcium-independent| alpha-latrotoxin receptor 2) Length = 1478 Score = 36.2 bits (82), Expect = 0.021 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = -1 Query: 339 SECTISVSNDIFGDPCPRVVKDLAVEAECSPSSATKEARDEM*CGILVTSWCKGAFRSIH 160 ++C + +D+F DPCP K L V+ EC P K +V S C Sbjct: 101 TQCIVVTGSDVFPDPCPGTYKYLEVQYECVPYMEQKVFVCPGTLKAIVDSPC---IYEAE 157 Query: 159 SCSWCWCKD 133 + WCKD Sbjct: 158 QKAGAWCKD 166
>SAL_SILAS (Q9PVW8) Rhamnose-binding lectin precursor (SAL) (RBL) (Roe lectin)| Length = 308 Score = 35.4 bits (80), Expect = 0.035 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -1 Query: 339 SECTISVSNDIFGDPCPRVVKDLAVEAEC 253 S CTI +N+ FGDPCP K L + C Sbjct: 279 STCTIPANNNFFGDPCPNTYKYLRIVYAC 307 Score = 32.7 bits (73), Expect = 0.23 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -1 Query: 345 GNSECTISVSNDIFGDPCPRVVKDLAVEAECS 250 G CT+ N IF DPC VK L V C+ Sbjct: 182 GKKSCTVEALNTIFSDPCSGTVKYLTVTYICT 213
>LPHN2_HUMAN (O95490) Latrophilin-2 precursor (Calcium-independent| alpha-latrotoxin receptor 2) (Latrophilin homolog 1) (Lectomedin-1) Length = 1459 Score = 35.4 bits (80), Expect = 0.035 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -1 Query: 339 SECTISVSNDIFGDPCPRVVKDLAVEAECSP 247 ++C + +D+F DPCP K L V+ EC P Sbjct: 101 TQCIVVTGSDVFPDPCPGTYKYLEVQYECVP 131
>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) Length = 835 Score = 34.7 bits (78), Expect = 0.060 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -1 Query: 345 GNSECTISVSNDIFG-DPCPRVVKDLAVEAECS 250 G C++ V+ + FG DPC V+K L+VEA CS Sbjct: 803 GKESCSVQVTPENFGGDPCRNVLKKLSVEAICS 835
>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (CIRL-1) Length = 1515 Score = 33.1 bits (74), Expect = 0.17 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -1 Query: 339 SECTISVSNDIFGDPCPRVVKDLAVEAECSP 247 ++C + +D F DPCP K L V+ +C P Sbjct: 100 TQCVVVAGSDAFPDPCPGTYKYLEVQYDCVP 130
>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (Lectomedin-2) Length = 1474 Score = 33.1 bits (74), Expect = 0.17 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -1 Query: 339 SECTISVSNDIFGDPCPRVVKDLAVEAECSP 247 ++C + +D F DPCP K L V+ +C P Sbjct: 100 TQCVVVAGSDAFPDPCPGTYKYLEVQYDCVP 130
>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) Length = 1472 Score = 33.1 bits (74), Expect = 0.17 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -1 Query: 339 SECTISVSNDIFGDPCPRVVKDLAVEAECSP 247 ++C + +D F DPCP K L V+ +C P Sbjct: 100 TQCVVVAGSDAFPDPCPGTYKYLEVQYDCVP 130
>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin| receptor 1) (Lectomedin-2) (Fragment) Length = 1406 Score = 33.1 bits (74), Expect = 0.17 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -1 Query: 339 SECTISVSNDIFGDPCPRVVKDLAVEAECSP 247 ++C + +D F DPCP K L V+ +C P Sbjct: 40 TQCVVVAGSDAFPDPCPGTYKYLEVQYDCVP 70
>CU063_PANTR (Q68US5) Protein C21orf63 homolog precursor| Length = 441 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -1 Query: 345 GNSECTISVSNDIFGDPC-PRVVKDLAVEAECSPSS 241 G C I V+N FG PC P V K L V C P + Sbjct: 228 GKQRCKIIVNNHHFGSPCLPGVKKYLTVTYACVPKN 263
>CU063_HUMAN (P58658) Protein C21orf63 precursor (SUE21)| Length = 441 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -1 Query: 345 GNSECTISVSNDIFGDPC-PRVVKDLAVEAECSPSS 241 G C I V+N FG PC P V K L V C P + Sbjct: 228 GKQRCKIIVNNHHFGSPCLPGVKKYLTVTYACVPKN 263
>HMT1_ARATH (Q9SDL7) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (AtHMT-1) Length = 326 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = +2 Query: 134 SLHQHHEQLWIERNAPLHQLVTRIPHHISSRASLVADDGEHSASTAKSLTTRGHGSPNIS 313 SL Q +L +E + V+++ H +RA + A G + A A GH N+S Sbjct: 94 SLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGAYLADGSEYSGHYGENVS 153 Query: 314 FETL 325 + L Sbjct: 154 LDKL 157
>CHSD_PETHY (P22925) Chalcone synthase D (EC 2.3.1.74) (Naringenin-chalcone| synthase D) Length = 419 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%) Frame = +2 Query: 212 HISSRASLVADDGEHSASTAKSLTTRGHG---------SPNISFETLIVHSL 340 ++SS + L D +ST K T G G P I+FET+++HS+ Sbjct: 336 NMSSASILFVLDEMRKSSTQKGFDTTGEGLKWGVLIGFGPGITFETIVLHSV 387
>IGS4B_HUMAN (Q8N126) Immunoglobulin superfamily member 4B precursor| (Nectin-like protein 1) (TSLC1-like protein 1) (Synaptic cell adhesion molecule 3) (Brain immunoglobulin receptor) Length = 398 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 9/42 (21%) Frame = +2 Query: 188 QLVTRIPHHISSRASLV--ADDGEHSAS-------TAKSLTT 286 QLVT PH +S S V AD+GE++ S TAKSL T Sbjct: 84 QLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVT 125
>CU063_MOUSE (P58659) Protein C21orf63 homolog precursor| Length = 440 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = -1 Query: 345 GNSECTISVSNDIFGDPC-PRVVKDLAVEAECSPSS 241 G C + V N FG PC P V K L V C P + Sbjct: 228 GKQRCKVLVDNYHFGSPCLPGVKKYLTVAYACVPKN 263
>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC| 2.7.7.6) (MtRPOL) Length = 1207 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -1 Query: 174 FRSIHSCSWCWCKDNPTSEEIRAAKQTNKQTHTTPIVPSL 55 F S+H C W D PT E+ ++ + H+ PI+ L Sbjct: 1116 FVSVHDCFWTHAADIPTMNEV--CREQFVRLHSQPILEDL 1153
>SYN_XYLFT (Q87A82) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 128 GLSLHQHHEQLWIERNAPLHQLVTRIPHHISSRASLVADDGEHSAS 265 GL L HE+ E++ +VT P HI + + DDG+ A+ Sbjct: 334 GLDLQTEHERWLTEKHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAA 379
>SYN_XYLFA (Q9PAF5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 128 GLSLHQHHEQLWIERNAPLHQLVTRIPHHISSRASLVADDGEHSAS 265 GL L HE+ E++ +VT P HI + + DDG+ A+ Sbjct: 334 GLDLQTEHERWLTEKHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAA 379
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 210 CGILVTSWCKGAFRSIHSCSWCWCKDNPT 124 CG +T C +S H C WC +DNPT Sbjct: 547 CGGFLT--CHECLQS-HECGWCGNEDNPT 572
>YK13_CAEEL (P34337) Putative tyrosine-protein phosphatase C15H7.3 (EC| 3.1.3.48) Length = 398 Score = 27.3 bits (59), Expect = 9.6 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = -1 Query: 174 FRSIHSCSWCWCKDNPTSEEIR 109 F ++H CW K+N T+EE++ Sbjct: 366 FGTVHRSMACWFKNNSTNEEVQ 387
>M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kinase 14 (EC| 2.7.11.25) (NF-kappa beta-inducing kinase) (Serine/threonine-protein kinase NIK) Length = 942 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = -1 Query: 273 LAVEAECSPSSATKEARDEM*CGILVTSWCKGAFRSIHSCSWCWCKDNPT 124 L+ ++E +PS A++ +RD + G V SW A SCS + PT Sbjct: 800 LSDDSEKNPSKASQSSRDTLSSG--VHSWNSQAEARTCSCSTALARGRPT 847
>SYN_XANCP (Q8PAC4) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 464 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +2 Query: 128 GLSLHQHHEQLWIERNAPLHQLVTRIPHHISSRASLVADDGEHSAS 265 GL L HE+ E + +VT P HI + + DDG+ A+ Sbjct: 332 GLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAA 377
>SYN_XANAC (Q8PM16) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 464 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +2 Query: 128 GLSLHQHHEQLWIERNAPLHQLVTRIPHHISSRASLVADDGEHSAS 265 GL L HE+ E + +VT P HI + + DDG+ A+ Sbjct: 332 GLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAA 377
>CLAT_CAEEL (P32756) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)| (Choline acetylase) (ChAT) Length = 627 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%) Frame = +1 Query: 106 CPYFFT-SRIIFTPT-----PRTTMDRAKRSLAPACHE 201 CPY R+IF PT PRT + K+SLA A + Sbjct: 583 CPYNIQPDRVIFAPTAFRSDPRTDLQHFKKSLAGAMRD 620 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,897,280 Number of Sequences: 219361 Number of extensions: 826789 Number of successful extensions: 2517 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2452 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2517 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
