ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
2emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC OSJNBb... 78 2e-11
3emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa... 78 2e-11
4dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 78 2e-11
6emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G... 78 2e-11
7dbj|AB016081.2| Oryzias latipes OlGC6 gene for guanylyl cyclase ... 42 1.2
8gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome 40 4.6
9gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com... 40 4.6
10gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, co... 40 4.6
11gb|AC151353.2| Xenopus tropicalis clone ISB-4M1, complete sequence 40 4.6
12emb|BX294189.11| Zebrafish DNA sequence from clone CH211-218D20 ... 40 4.6
13gb|AC092581.2| Homo sapiens BAC clone RP11-16I14 from 4, complet... 40 4.6
14dbj|AP006538.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 4.6
15gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge... 40 4.6 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                            
Query: 201      gaattccacatcacatctcgtctcgagcttctttggtggctgatgacggcgagcactcag 260
                |||||||| ||||||||||  | ||||  |||||||||| |||||  || || ||||  |
Sbjct: 13806041 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 13806100

                                                                            
Query: 261      cctcaactgctaaatccttgacaactcgggggcatggatcaccaaatatatcgttcgaaa 320
                |||||||||||||||| ||||  ||||   |||||||||||||||| | |||||| ||||
Sbjct: 13806101 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 13806160

                       
Query: 321      cactgat 327
                |||||||
Sbjct: 13806161 cactgat 13806167
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>emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC OSJNBb0016C24 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 87778

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                         
Query: 201   gaattccacatcacatctcgtctcgagcttctttggtggctgatgacggcgagcactcag 260
             |||||||| ||||||||||  | ||||  |||||||||| |||||  || || ||||  |
Sbjct: 69348 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 69407

                                                                         
Query: 261   cctcaactgctaaatccttgacaactcgggggcatggatcaccaaatatatcgttcgaaa 320
             |||||||||||||||| ||||  ||||   |||||||||||||||| | |||||| ||||
Sbjct: 69408 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 69467

                    
Query: 321   cactgat 327
             |||||||
Sbjct: 69468 cactgat 69474
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>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145118

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                          
Query: 201    gaattccacatcacatctcgtctcgagcttctttggtggctgatgacggcgagcactcag 260
              |||||||| ||||||||||  | ||||  |||||||||| |||||  || || ||||  |
Sbjct: 139642 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 139701

                                                                          
Query: 261    cctcaactgctaaatccttgacaactcgggggcatggatcaccaaatatatcgttcgaaa 320
              |||||||||||||||| ||||  ||||   |||||||||||||||| | |||||| ||||
Sbjct: 139702 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 139761

                     
Query: 321    cactgat 327
              |||||||
Sbjct: 139762 cactgat 139768
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>dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031G01, full
            insert sequence
          Length = 3036

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 105/127 (82%)
 Strand = Plus / Minus

                                                                        
Query: 201  gaattccacatcacatctcgtctcgagcttctttggtggctgatgacggcgagcactcag 260
            |||||||| ||||||||||  | ||||  |||||||||| |||||  || || ||||  |
Sbjct: 2864 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 2805

                                                                        
Query: 261  cctcaactgctaaatccttgacaactcgggggcatggatcaccaaatatatcgttcgaaa 320
            |||||||||||||||| ||||  ||||   |||||||||||||||| | |||||| ||||
Sbjct: 2804 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 2745

                   
Query: 321  cactgat 327
            |||||||
Sbjct: 2744 cactgat 2738
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                            
Query: 201      gaattccacatcacatctcgtctcgagcttctttggtggctgatgacggcgagcactcag 260
                |||||||| ||||||||||  | ||||  |||||||||| |||||  || || ||||  |
Sbjct: 13760321 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 13760380

                                                                            
Query: 261      cctcaactgctaaatccttgacaactcgggggcatggatcaccaaatatatcgttcgaaa 320
                |||||||||||||||| ||||  ||||   |||||||||||||||| | |||||| ||||
Sbjct: 13760381 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 13760440

                       
Query: 321      cactgat 327
                |||||||
Sbjct: 13760441 cactgat 13760447
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>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 155451

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                          
Query: 201    gaattccacatcacatctcgtctcgagcttctttggtggctgatgacggcgagcactcag 260
              |||||||| ||||||||||  | ||||  |||||||||| |||||  || || ||||  |
Sbjct: 121700 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 121759

                                                                          
Query: 261    cctcaactgctaaatccttgacaactcgggggcatggatcaccaaatatatcgttcgaaa 320
              |||||||||||||||| ||||  ||||   |||||||||||||||| | |||||| ||||
Sbjct: 121760 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 121819

                     
Query: 321    cactgat 327
              |||||||
Sbjct: 121820 cactgat 121826
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>dbj|AB016081.2| Oryzias latipes OlGC6 gene for guanylyl cyclase C, complete cds
          Length = 21935

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   ggattatctttacaccaacac 148
             |||||||||||||||||||||
Sbjct: 11103 ggattatctttacaccaacac 11083
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>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tctcgagcttctttggtggc 240
              ||||||||||||||||||||
Sbjct: 125780 tctcgagcttctttggtggc 125799
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>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence
          Length = 194380

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   tctttggtggctgatgacgg 249
             ||||||||||||||||||||
Sbjct: 21979 tctttggtggctgatgacgg 21960
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>gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, complete sequence
          Length = 197964

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tctttggtggctgatgacgg 249
             ||||||||||||||||||||
Sbjct: 31843 tctttggtggctgatgacgg 31862
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>gb|AC151353.2| Xenopus tropicalis clone ISB-4M1, complete sequence
          Length = 110908

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    cagtaacaaacaatggtaca 56
             ||||||||||||||||||||
Sbjct: 67603 cagtaacaaacaatggtaca 67622
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>emb|BX294189.11| Zebrafish DNA sequence from clone CH211-218D20 in linkage group 9,
             complete sequence
          Length = 194025

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    accattaatcaaatcaaatc 34
             ||||||||||||||||||||
Sbjct: 86074 accattaatcaaatcaaatc 86055
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>gb|AC092581.2| Homo sapiens BAC clone RP11-16I14 from 4, complete sequence
          Length = 162075

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ctcaactgctaaatccttga 281
             ||||||||||||||||||||
Sbjct: 27754 ctcaactgctaaatccttga 27735
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>dbj|AP006538.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18J10, TM0323a,
             complete sequence
          Length = 95559

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    accattaatcaaatcaaatc 34
             ||||||||||||||||||||
Sbjct: 85715 accattaatcaaatcaaatc 85734
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>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tctcgagcttctttggtggc 240
              ||||||||||||||||||||
Sbjct: 125753 tctcgagcttctttggtggc 125772


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,241,072
Number of Sequences: 3902068
Number of extensions: 2241072
Number of successful extensions: 42203
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42123
Number of HSP's gapped (non-prelim): 80
length of query: 345
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 323
effective length of database: 17,147,199,772
effective search space: 5538545526356
effective search space used: 5538545526356
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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