>CSD_STAES (Q8CTA4) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 413

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +2

Query: 89  LSTGNEILMSSIELHYILVPTPTLAHRHRQRFRVPRLSMLGLPKEGPLKISQQGRINQAT 268
           +S G+EI+++ +E H  +VP   LA R     +   L  + + K+G L++       +AT
Sbjct: 113 ISEGDEIVVTEMEHHANIVPWQQLAKR-----KNATLKFIPMTKDGELQLDD----IKAT 163

Query: 269 VGCNAFIVLLLHV 307
           +     IV + HV
Sbjct: 164 INDKTKIVAIAHV 176

>CSD_STAEQ (Q5HQQ0) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 413

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +2

Query: 89  LSTGNEILMSSIELHYILVPTPTLAHRHRQRFRVPRLSMLGLPKEGPLKISQQGRINQAT 268
           +S G+EI+++ +E H  +VP   LA R     +   L  + + K+G L++       +AT
Sbjct: 113 ISEGDEIVVTEMEHHANIVPWQQLAKR-----KNATLKFIPMTKDGELQLDD----IKAT 163

Query: 269 VGCNAFIVLLLHV 307
           +     IV + HV
Sbjct: 164 INDKTKIVAIAHV 176

>CSD_PSEPK (Q9Z408) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 401

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 86  QLSTGNEILMSSIELHYILVPTPTLAHRHRQRFRVPRLSMLGLPKEGPLKISQ 244
           +L  G+EI +S++E H  L+P   LAHR         L ++ LP +   +I Q
Sbjct: 106 RLEAGDEIAISALEHHANLLPWQQLAHRR-------NLHLVVLPLDAHGRIDQ 151

>POLN_BFV (P87515) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3
          Length = 2410

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 35   RIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYILVPTPTLAHRHRQ 178
            +I  +  IGT+  H    L+ G   L+ S +   + +PTP   H ++Q
Sbjct: 1183 KITWLAPIGTQGAHHTANLNLGIPPLLGSFDAVVVNMPTPFRNHHYQQ 1230

>UVRC_CHLMU (Q9PLD1) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 601

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 155 TLAHRHRQRFRVPRLSMLGLPKEGPLKI 238
           T+A +H ++F+   + +LGL ++GPL I
Sbjct: 244 TMAKQHVEKFQAYDIDVLGLYRKGPLAI 271

>RCNA_ECO57 (Q8X3U5) Nickel/cobalt efflux system rcnA|
          Length = 283

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 275 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 192
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113

>ZN333_HUMAN (Q96JL9) Zinc finger protein 333|
          Length = 665

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 62  TEKTHPAVQ---LSTGNEILMSSIELHYILVPTPTLAHRH 172
           T +  PA+Q    S G   L +++++  +++P PTL HR+
Sbjct: 124 TREDRPALQEPPWSLGCTGLKAAMQIQRVVIPVPTLGHRN 163

>RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 275 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 192
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113

>RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 275 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 192
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,399,892
Number of Sequences: 219361
Number of extensions: 783266
Number of successful extensions: 1754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)