ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EDG3_MOUSE (Q9Z0U9) Sphingosine 1-phosphate receptor Edg-3 (S1P ... 31 0.69
2TT1_ARATH (Q8VWG3) TRANSPARENT TESTA 1 protein (Zinc finger prot... 30 1.2
3EDG3_HUMAN (Q99500) Sphingosine 1-phosphate receptor Edg-3 (S1P ... 30 1.5
4IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) ... 30 2.0
5RFNG_HUMAN (Q9Y644) Beta-1,3-N-acetylglucosaminyltransferase rad... 29 2.6
6POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP12... 29 2.6
7POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP12... 29 2.6
8POLN_EEVVM (Q9WJC7) Nonstructural polyprotein (Polyprotein nsP12... 29 2.6
9POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP12... 29 2.6
10POLN_EEVVC (Q8V294) Nonstructural polyprotein (Polyprotein nsP12... 29 2.6
11KI18A_HUMAN (Q8NI77) Kinesin family member 18A 29 3.4
12FKS26_MOUSE (Q8R3L2) Protein FKSG26 29 3.4
13POLN_EEEVF (Q4QXJ8) Nonstructural polyprotein (Polyprotein nsP12... 28 4.5
14GLMS_SYNEL (Q8DJI6) Glucosamine--fructose-6-phosphate aminotrans... 28 4.5
15LSP2_DROME (Q24388) Larval serum protein 2 precursor (LSP-2) (He... 28 5.8
16ZN646_HUMAN (O15015) Zinc finger protein 646 28 7.6
17MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupl... 28 7.6
18GCSP_CHRVO (Q7NSJ5) Glycine dehydrogenase [decarboxylating] (EC ... 28 7.6
19R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 27 9.9
20R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 27 9.9
21POT9_ARATH (O49423) Putative potassium transporter 9 (AtPOT9) 27 9.9
22PSB8_HUMAN (P28062) Proteasome subunit beta type 8 precursor (EC... 27 9.9
23TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cyto... 27 9.9

>EDG3_MOUSE (Q9Z0U9) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor|
           Edg-3) (Endothelial differentiation G-protein coupled
           receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3)
           (Lysophospholipid receptor B3)
          Length = 378

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -2

Query: 303 TLHCFPRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCW 133
           T    P  W      +   + A TCS     +ERH   +  RP   N    V   +G CW
Sbjct: 104 TFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKKHRVFLLIGMCW 163

Query: 132 LFSFSV 115
           L +FS+
Sbjct: 164 LIAFSL 169



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>TT1_ARATH (Q8VWG3) TRANSPARENT TESTA 1 protein (Zinc finger protein TT1)|
           (TTL1)
          Length = 303

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
 Frame = +1

Query: 124 RK*PATTNNTRPMIERARPRYY-IFGMSFH-------PPSSFRTCRXHYRRRQ-HRPFPC 276
           RK P +   T+P      P Y  + G   H       P   FRT + HY+R+  H+PF C
Sbjct: 172 RKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSC 231



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>EDG3_HUMAN (Q99500) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor|
           Edg-3) (Endothelial differentiation G-protein coupled
           receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3)
          Length = 378

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -2

Query: 303 TLHCFPRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCW 133
           T    P  W      +   + A TCS     +ERH   +  RP   N    V   +G CW
Sbjct: 103 TFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKRHRVFLLIGMCW 162

Query: 132 LFSFSV 115
           L +F++
Sbjct: 163 LIAFTL 168



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>IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) (Novel|
           interleukin receptor)
          Length = 538

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -2

Query: 288 PRTWAREWAMLPPPIMAP 235
           PR++ R+W ++PPP+ +P
Sbjct: 516 PRSYLRQWVVIPPPLSSP 533



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>RFNG_HUMAN (Q9Y644) Beta-1,3-N-acetylglucosaminyltransferase radical fringe|
           (EC 2.4.1.222) (O-fucosylpeptide
           3-beta-N-acetylglucosaminyltransferase)
          Length = 331

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 55  PLRSTTPALIPSPTVLTTSTNRKRK*PATTNNTRPMIERARPRYYIF 195
           P R   P+L P    +   T RK   P      R  I RAR + +IF
Sbjct: 47  PSRPAAPSLRPDDVFIAVKTTRKNHGPRLRLLLRTWISRARQQTFIF 93



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>POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2492

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127
           RW + + +D    RP  L     V+GCCW F
Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423



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>POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2492

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127
           RW + + +D    RP  L     V+GCCW F
Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423



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>POLN_EEVVM (Q9WJC7) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2498

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127
           RW + + +D    RP  L     V+GCCW F
Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423



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>POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2485

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127
           RW + + +D    RP  L     V+GCCW F
Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423



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>POLN_EEVVC (Q8V294) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2496

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127
           RW + + +D    RP  L     V+GCCW F
Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423



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>KI18A_HUMAN (Q8NI77) Kinesin family member 18A|
          Length = 898

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 73  PALIPSPTVLTTSTNRKRK*PATTNNT 153
           P+++PS   +TT+  RKRK  ++T+N+
Sbjct: 814 PSMVPSYMAMTTAAKRKRKLTSSTSNS 840



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>FKS26_MOUSE (Q8R3L2) Protein FKSG26|
          Length = 676

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 154 RPMIERARPRYYIFGMSFHPPSSFR--TCRXHYRRRQHRPF 270
           R +IERA    Y    +FHP  S    TCR  YRR ++R F
Sbjct: 306 RDLIERA---LYSMECAFHPLFSLTSGTCRLDYRRPENRSF 343



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>POLN_EEEVF (Q4QXJ8) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2493

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 249 PIMAPTCSERRRWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127
           P++A   S   RW   H  D+   +   +   S V+GCCW F
Sbjct: 383 PVVAQAFS---RWAREHRADLEDEKGLGVRERSLVMGCCWAF 421



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>GLMS_SYNEL (Q8DJI6) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 625

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 19/82 (23%)
 Frame = +1

Query: 64  STTPALIP----------------SPT---VLTTSTNRKRK*PATTNNTRPMIERARPRY 186
           S TPA+IP                +PT   V     +R RK P T N    M+E+   ++
Sbjct: 195 SDTPAIIPYTRAVLPLENGELARLTPTGVEVYDFEGHRLRKTPRTLNWNPVMVEKQGFKH 254

Query: 187 YIFGMSFHPPSSFRTCRXHYRR 252
           Y+    +  P   R C  +Y R
Sbjct: 255 YMLKEIYEQPGVVRACLENYLR 276



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>LSP2_DROME (Q24388) Larval serum protein 2 precursor (LSP-2) (Hexamerin 2)|
          Length = 701

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 148 NTRPMIERARPRYYIFGMSFHPPSSFRTCRXHYRRRQHRPF 270
           N  P +E +    Y FG + H   S    +   +R  H+PF
Sbjct: 467 NVEPAVEGSADPLYTFGRNSHYKGSSYVIKARQQRLNHKPF 507



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>ZN646_HUMAN (O15015) Zinc finger protein 646|
          Length = 1829

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +1

Query: 73  PALIPSPTVLTTSTNRKRK*PATTNNTRPMIERARPRYYIFGMSFHPPSSFRTCRXHYRR 252
           P++ P+P +L  +T+++ + P TT + RP       +    G ++    S    R  +R 
Sbjct: 436 PSVPPAPLLLAETTHKEEEDPTTTLDHRPY------KCSECGRAYRHRGSLVNHRHSHRT 489

Query: 253 RQHRPFPCPRPW 288
            +++   CPR +
Sbjct: 490 GEYQCSLCPRKY 501



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>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)|
           (H9)
          Length = 613

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 58  LRSTTPALIPSPTVLTTSTN 117
           L S T A +P PTV+TTSTN
Sbjct: 575 LESDTIADLPDPTVVTTSTN 594



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>GCSP_CHRVO (Q7NSJ5) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 950

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 300 LHCFPRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCVVGCC 136
           L   P    RE A+L  P+     SE    M R+ K + +R  ++NH    +G C
Sbjct: 451 LDAIPAALKRESAILTHPVFNTHHSEHE--MLRYMKKLENRDLAMNHSMISLGSC 503



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>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7180

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 151  CCWLLLAIFFFCS 113
            CCW+L + F FCS
Sbjct: 3650 CCWILASTFLFCS 3662



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>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7176

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 151  CCWLLLAIFFFCS 113
            CCW+L + F FCS
Sbjct: 3646 CCWILASTFLFCS 3658



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>POT9_ARATH (O49423) Putative potassium transporter 9 (AtPOT9)|
          Length = 807

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 15  LNCLFNMIPIQDYSTALNNSSAYSISYRPNYEYEQKKKIASNNQQH 152
           L  L + I I+      +NSS YS +Y  N+  +    +  NN  H
Sbjct: 645 LTKLSSFIRIETMMEPTSNSSTYSSTYSVNHTQDSTVDLIHNNNNH 690



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>PSB8_HUMAN (P28062) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)|
           (Proteasome component C13) (Macropain subunit C13)
           (Multicatalytic endopeptidase complex subunit C13)
          Length = 276

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 51  YSTALNNSSAYSI---SYRPNYEYEQKKKIASNNQQHTTHD*ASTAEILHLWHV 203
           +ST   N+ AY +    YRPN   E+   +      + TH  + +  +++++H+
Sbjct: 198 FSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHM 251



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>TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)|
           (Neuronectin) (GMEM) (JI) (Miotendinous antigen)
           (Glioma-associated-extracellular matrix antigen) (GP
           150-225) (Tenascin-C) (TN-C)
          Length = 2201

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 198 AKDVVSRPCSLNHGSCVVGCC 136
           ++++   PCS  HG+CV G C
Sbjct: 248 SREICPVPCSEEHGTCVDGLC 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,580,390
Number of Sequences: 219361
Number of extensions: 803413
Number of successful extensions: 2726
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2694
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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