ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41e10 |
|---|---|
| Clone Library Name | barley_pub |
>EDG3_MOUSE (Q9Z0U9) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor| Edg-3) (Endothelial differentiation G-protein coupled receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3) (Lysophospholipid receptor B3) Length = 378 Score = 31.2 bits (69), Expect = 0.69 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Frame = -2 Query: 303 TLHCFPRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCW 133 T P W + + A TCS +ERH + RP N V +G CW Sbjct: 104 TFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKKHRVFLLIGMCW 163 Query: 132 LFSFSV 115 L +FS+ Sbjct: 164 LIAFSL 169
>TT1_ARATH (Q8VWG3) TRANSPARENT TESTA 1 protein (Zinc finger protein TT1)| (TTL1) Length = 303 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 9/60 (15%) Frame = +1 Query: 124 RK*PATTNNTRPMIERARPRYY-IFGMSFH-------PPSSFRTCRXHYRRRQ-HRPFPC 276 RK P + T+P P Y + G H P FRT + HY+R+ H+PF C Sbjct: 172 RKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSC 231
>EDG3_HUMAN (Q99500) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor| Edg-3) (Endothelial differentiation G-protein coupled receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3) Length = 378 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Frame = -2 Query: 303 TLHCFPRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCW 133 T P W + + A TCS +ERH + RP N V +G CW Sbjct: 103 TFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKRHRVFLLIGMCW 162 Query: 132 LFSFSV 115 L +F++ Sbjct: 163 LIAFTL 168
>IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) (Novel| interleukin receptor) Length = 538 Score = 29.6 bits (65), Expect = 2.0 Identities = 8/18 (44%), Positives = 15/18 (83%) Frame = -2 Query: 288 PRTWAREWAMLPPPIMAP 235 PR++ R+W ++PPP+ +P Sbjct: 516 PRSYLRQWVVIPPPLSSP 533
>RFNG_HUMAN (Q9Y644) Beta-1,3-N-acetylglucosaminyltransferase radical fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 331 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +1 Query: 55 PLRSTTPALIPSPTVLTTSTNRKRK*PATTNNTRPMIERARPRYYIF 195 P R P+L P + T RK P R I RAR + +IF Sbjct: 47 PSRPAAPSLRPDDVFIAVKTTRKNHGPRLRLLLRTWISRARQQTFIF 93
>POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -2 Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -2 Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVM (Q9WJC7) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2498 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -2 Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2485 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -2 Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVC (Q8V294) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2496 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -2 Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>KI18A_HUMAN (Q8NI77) Kinesin family member 18A| Length = 898 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +1 Query: 73 PALIPSPTVLTTSTNRKRK*PATTNNT 153 P+++PS +TT+ RKRK ++T+N+ Sbjct: 814 PSMVPSYMAMTTAAKRKRKLTSSTSNS 840
>FKS26_MOUSE (Q8R3L2) Protein FKSG26| Length = 676 Score = 28.9 bits (63), Expect = 3.4 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +1 Query: 154 RPMIERARPRYYIFGMSFHPPSSFR--TCRXHYRRRQHRPF 270 R +IERA Y +FHP S TCR YRR ++R F Sbjct: 306 RDLIERA---LYSMECAFHPLFSLTSGTCRLDYRRPENRSF 343
>POLN_EEEVF (Q4QXJ8) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2493 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = -2 Query: 249 PIMAPTCSERRRWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 P++A S RW H D+ + + S V+GCCW F Sbjct: 383 PVVAQAFS---RWAREHRADLEDEKGLGVRERSLVMGCCWAF 421
>GLMS_SYNEL (Q8DJI6) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 625 Score = 28.5 bits (62), Expect = 4.5 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 19/82 (23%) Frame = +1 Query: 64 STTPALIP----------------SPT---VLTTSTNRKRK*PATTNNTRPMIERARPRY 186 S TPA+IP +PT V +R RK P T N M+E+ ++ Sbjct: 195 SDTPAIIPYTRAVLPLENGELARLTPTGVEVYDFEGHRLRKTPRTLNWNPVMVEKQGFKH 254 Query: 187 YIFGMSFHPPSSFRTCRXHYRR 252 Y+ + P R C +Y R Sbjct: 255 YMLKEIYEQPGVVRACLENYLR 276
>LSP2_DROME (Q24388) Larval serum protein 2 precursor (LSP-2) (Hexamerin 2)| Length = 701 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/41 (29%), Positives = 18/41 (43%) Frame = +1 Query: 148 NTRPMIERARPRYYIFGMSFHPPSSFRTCRXHYRRRQHRPF 270 N P +E + Y FG + H S + +R H+PF Sbjct: 467 NVEPAVEGSADPLYTFGRNSHYKGSSYVIKARQQRLNHKPF 507
>ZN646_HUMAN (O15015) Zinc finger protein 646| Length = 1829 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/72 (23%), Positives = 35/72 (48%) Frame = +1 Query: 73 PALIPSPTVLTTSTNRKRK*PATTNNTRPMIERARPRYYIFGMSFHPPSSFRTCRXHYRR 252 P++ P+P +L +T+++ + P TT + RP + G ++ S R +R Sbjct: 436 PSVPPAPLLLAETTHKEEEDPTTTLDHRPY------KCSECGRAYRHRGSLVNHRHSHRT 489 Query: 253 RQHRPFPCPRPW 288 +++ CPR + Sbjct: 490 GEYQCSLCPRKY 501
>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)| (H9) Length = 613 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = +1 Query: 58 LRSTTPALIPSPTVLTTSTN 117 L S T A +P PTV+TTSTN Sbjct: 575 LESDTIADLPDPTVVTTSTN 594
>GCSP_CHRVO (Q7NSJ5) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 950 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -2 Query: 300 LHCFPRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCVVGCC 136 L P RE A+L P+ SE M R+ K + +R ++NH +G C Sbjct: 451 LDAIPAALKRESAILTHPVFNTHHSEHE--MLRYMKKLENRDLAMNHSMISLGSC 503
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 27.3 bits (59), Expect = 9.9 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -1 Query: 151 CCWLLLAIFFFCS 113 CCW+L + F FCS Sbjct: 3650 CCWILASTFLFCS 3662
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 27.3 bits (59), Expect = 9.9 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -1 Query: 151 CCWLLLAIFFFCS 113 CCW+L + F FCS Sbjct: 3646 CCWILASTFLFCS 3658
>POT9_ARATH (O49423) Putative potassium transporter 9 (AtPOT9)| Length = 807 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = +3 Query: 15 LNCLFNMIPIQDYSTALNNSSAYSISYRPNYEYEQKKKIASNNQQH 152 L L + I I+ +NSS YS +Y N+ + + NN H Sbjct: 645 LTKLSSFIRIETMMEPTSNSSTYSSTYSVNHTQDSTVDLIHNNNNH 690
>PSB8_HUMAN (P28062) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = +3 Query: 51 YSTALNNSSAYSI---SYRPNYEYEQKKKIASNNQQHTTHD*ASTAEILHLWHV 203 +ST N+ AY + YRPN E+ + + TH + + +++++H+ Sbjct: 198 FSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHM 251
>TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)| (Neuronectin) (GMEM) (JI) (Miotendinous antigen) (Glioma-associated-extracellular matrix antigen) (GP 150-225) (Tenascin-C) (TN-C) Length = 2201 Score = 27.3 bits (59), Expect = 9.9 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -2 Query: 198 AKDVVSRPCSLNHGSCVVGCC 136 ++++ PCS HG+CV G C Sbjct: 248 SREICPVPCSEEHGTCVDGLC 268 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,580,390 Number of Sequences: 219361 Number of extensions: 803413 Number of successful extensions: 2726 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2454 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2694 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
