Clone Name | rbastl41e10 |
---|---|
Clone Library Name | barley_pub |
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds Length = 3467 Score = 65.9 bits (33), Expect = 7e-08 Identities = 80/96 (83%) Strand = Plus / Minus Query: 215 cttcttcgttcagaacatgtcggngccattatcggcggcggcagcatcgcccattccctt 274 ||||||| ||||||||||||||| | | |||| || || |||||||||||||||||||| Sbjct: 3184 cttcttcattcagaacatgtcggtgtgagtatcagcagcagcagcatcgcccattccctt 3125 Query: 275 gcccacgtccttggaaaacagtggagcgtccagctt 310 | || ||| | | |||||||||||||||||||| Sbjct: 3124 gtccgtgtcatccgggaacagtggagcgtccagctt 3089
>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds Length = 3422 Score = 46.1 bits (23), Expect = 0.067 Identities = 23/23 (100%) Strand = Plus / Minus Query: 80 ttattccatctcctaccgtccta 102 ||||||||||||||||||||||| Sbjct: 3238 ttattccatctcctaccgtccta 3216
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 242 attatcggcggcggcagcatcg 263 |||||||||||||||||||||| Sbjct: 591478 attatcggcggcggcagcatcg 591499
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 242 attatcggcggcggcagcatcg 263 |||||||||||||||||||||| Sbjct: 248203 attatcggcggcggcagcatcg 248224
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 242 attatcggcggcggcagcatcg 263 |||||||||||||||||||||| Sbjct: 248261 attatcggcggcggcagcatcg 248282
>emb|AL162419.34| Human DNA sequence from clone RP11-358M14 on chromosome 9 Contains the 5' end of a variant of a novel gene (FLJ90578) and a CpG island, complete sequence Length = 174535 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 catcttaattgcttatttaat 32 ||||||||||||||||||||| Sbjct: 122288 catcttaattgcttatttaat 122308
>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13 Contains STS and GSSs, complete sequence Length = 137739 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 acatctttggcatgtctttcc 208 ||||||||||||||||||||| Sbjct: 48566 acatctttggcatgtctttcc 48546
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 tttccatccaccttcttcgtt 224 ||||||||||||||||||||| Sbjct: 9757635 tttccatccaccttcttcgtt 9757615
>dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0040N23 Length = 101061 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 tttccatccaccttcttcgtt 224 ||||||||||||||||||||| Sbjct: 30054 tttccatccaccttcttcgtt 30034
>gb|AC159980.10| Mus musculus chromosome 3, clone RP24-171D20, complete sequence Length = 153366 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 aacagaaaaagaaaatagcc 134 |||||||||||||||||||| Sbjct: 104668 aacagaaaaagaaaatagcc 104687
>gb|AC112143.5| Mus musculus BAC clone RP23-29E2 from chromosome 2, complete sequence Length = 205920 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tgtctttccatccaccttct 219 |||||||||||||||||||| Sbjct: 153552 tgtctttccatccaccttct 153571
>ref|XM_547889.2| PREDICTED: Canis familiaris similar to WD repeat domain 21A isoform 1 (LOC490767), mRNA Length = 1593 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cagaaaaagaaaatagccag 136 |||||||||||||||||||| Sbjct: 445 cagaaaaagaaaatagccag 464
>gb|AC122187.3| Mus musculus BAC clone RP23-21P2 from 1, complete sequence Length = 252095 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaaaatagccagcaa 139 |||||||||||||||||||| Sbjct: 124707 aaaaagaaaatagccagcaa 124688
>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence Length = 452156 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 cggcggcggcagcatcgccc 266 |||||||||||||||||||| Sbjct: 256384 cggcggcggcagcatcgccc 256365
>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence Length = 183097 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 agccagcaacaaccaacaac 150 |||||||||||||||||||| Sbjct: 36825 agccagcaacaaccaacaac 36844
>emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 in linkage group 2, complete sequence Length = 159100 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tttccatccaccttcttcgt 223 |||||||||||||||||||| Sbjct: 74413 tttccatccaccttcttcgt 74394
>gb|DQ068068.1| Uncultured bacterium BAC17H8, complete sequence Length = 135294 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 atcggcggcggcagcatcgc 264 |||||||||||||||||||| Sbjct: 104468 atcggcggcggcagcatcgc 104487
>gb|AC091554.5| Homo sapiens chromosome 8, clone RP11-155P23, complete sequence Length = 149318 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 agccagcaacaaccaacaac 150 |||||||||||||||||||| Sbjct: 101530 agccagcaacaaccaacaac 101549
>gb|AC110767.3| Homo sapiens BAC clone RP11-94H6 from 4, complete sequence Length = 40592 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 cagaaaaagaaaatagccagcaac 140 |||||||| ||||||||||||||| Sbjct: 10720 cagaaaaaaaaaatagccagcaac 10697
>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence Length = 163597 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 ctttccatccaccttcttcgttca 226 ||||||||||||||||||| |||| Sbjct: 138198 ctttccatccaccttcttctttca 138221
>gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, complete sequence Length = 174914 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 203 ctttccatccaccttcttcgttca 226 ||||||||||||||||||| |||| Sbjct: 165479 ctttccatccaccttcttctttca 165456
>emb|AL928537.12| Mouse DNA sequence from clone RP23-236E7 on chromosome 2, complete sequence Length = 190808 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tgtctttccatccaccttct 219 |||||||||||||||||||| Sbjct: 4345 tgtctttccatccaccttct 4364
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gtctttccatccaccttctt 220 |||||||||||||||||||| Sbjct: 1407362 gtctttccatccaccttctt 1407343
>gb|AF002217.1|AF002217 Ralstonia eutropha megaplasmid pHG1 nitric oxide reductase (norB) gene, complete cds Length = 3713 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 cggcggcggcagcatcgccc 266 |||||||||||||||||||| Sbjct: 3657 cggcggcggcagcatcgccc 3676
>gb|AC140308.2| Mus musculus BAC clone RP23-424G15 from 1, complete sequence Length = 207633 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaaaatagccagcaa 139 |||||||||||||||||||| Sbjct: 191101 aaaaagaaaatagccagcaa 191082
>emb|AL683891.11| Mouse DNA sequence from clone RP23-435E7 on chromosome 3, complete sequence Length = 162394 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 aacagaaaaagaaaatagcc 134 |||||||||||||||||||| Sbjct: 141718 aacagaaaaagaaaatagcc 141737 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,201,142 Number of Sequences: 3902068 Number of extensions: 3201142 Number of successful extensions: 72502 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72397 Number of HSP's gapped (non-prelim): 105 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)