ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC6A3_RAT (P23977) Sodium-dependent dopamine transporter (DA tra... 28 4.6
2SC6A3_MOUSE (Q61327) Sodium-dependent dopamine transporter (DA t... 28 4.6
3SC6A3_BOVIN (P27922) Sodium-dependent dopamine transporter (DA t... 28 4.6
4FOXK1_MOUSE (P42128) Forkhead box protein K1 (Myocyte nuclear fa... 28 7.9
5ZP3_RABIT (P48833) Zona pellucida sperm-binding protein 3 precur... 28 7.9

>SC6A3_RAT (P23977) Sodium-dependent dopamine transporter (DA transporter)|
           (DAT)
          Length = 619

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 107 LHLGESRSVEQFVPVTWWLAQLETTLIILVQVCLHGKIW 223
           LHL +SR ++   P  W L    T  ++LV V L+  +W
Sbjct: 221 LHLHQSRGIDDLGPPRWQL----TACLVLVIVLLYFSLW 255



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>SC6A3_MOUSE (Q61327) Sodium-dependent dopamine transporter (DA transporter)|
           (DAT)
          Length = 619

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 107 LHLGESRSVEQFVPVTWWLAQLETTLIILVQVCLHGKIW 223
           LHL +SR ++   P  W L    T  ++LV V L+  +W
Sbjct: 221 LHLHQSRGIDDLGPPRWQL----TACLVLVIVLLYFSLW 255



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>SC6A3_BOVIN (P27922) Sodium-dependent dopamine transporter (DA transporter)|
           (DAT)
          Length = 693

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 107 LHLGESRSVEQFVPVTWWLAQLETTLIILVQVCLHGKIW 223
           LHL ES+ ++   P  W L    T+ ++LV V L+  +W
Sbjct: 219 LHLHESQGIDDLGPPRWQL----TSCLVLVIVLLYFSLW 253



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>FOXK1_MOUSE (P42128) Forkhead box protein K1 (Myocyte nuclear factor) (MNF)|
          Length = 617

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 154 MVAGTARNHTHHPRAGLSS 210
           M  G+ R H+HHP AG +S
Sbjct: 576 MAPGSPRTHSHHPTAGYTS 594



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>ZP3_RABIT (P48833) Zona pellucida sperm-binding protein 3 precursor (Zona|
           pellucida glycoprotein ZP3) (Sperm receptor) (Zona
           pellucida protein C) (Fragment)
          Length = 415

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 112 SGRIAICRAICSCNMVAGTARNHTHHPRAGLSSRENLARS*D 237
           S  I  C     C+++AG+  N  H  R+ L SR ++    D
Sbjct: 309 SADICECCGNGDCDLIAGSPMNQNHAARSSLRSRRHVTEEAD 350


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,035,965
Number of Sequences: 219361
Number of extensions: 756722
Number of successful extensions: 1766
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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