>gb|AC007620.30| Homo sapiens 3 BAC RP11-145M9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 174060

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 52     gtacaaatggacattgtagaa 72
              |||||||||||||||||||||
Sbjct: 153438 gtacaaatggacattgtagaa 153458

>gb|AC107742.10| Mus musculus chromosome 15, clone RP23-331D7, complete sequence
          Length = 223952

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 234    agatggggaggggacaaggga 254
              |||||||||||||||||||||
Sbjct: 105883 agatggggaggggacaaggga 105903

>gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence
          Length = 175949

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   tggggaggggacaagggaagg 257
             |||||||||||||||||||||
Sbjct: 22391 tggggaggggacaagggaagg 22371

>emb|AL121656.2|CNS01DS6 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 367K01 of
             library CITB_978_SKB from chromosome 2 of Homo sapiens
             (Human)
          Length = 179206

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 233   gagatggggaggggacaaggg 253
             |||||||||||||||||||||
Sbjct: 93535 gagatggggaggggacaaggg 93555

>gb|AC150242.3| Rhinolophus ferrumequinum clone VMRC7-331J24, complete sequence
          Length = 120894

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    agaaattacatctgggagaa 121
              ||||||||||||||||||||
Sbjct: 101837 agaaattacatctgggagaa 101818

>ref|XM_426866.1| PREDICTED: Gallus gallus similar to Atp6a1-prov protein
           (LOC429309), partial mRNA
          Length = 928

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 ggaggggacaagggaaggac 259
           ||||||||||||||||||||
Sbjct: 273 ggaggggacaagggaaggac 254

>gb|AC142311.1| Pan troglodytes BAC clone RP43-47I3 from 7, complete sequence
          Length = 166861

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    tagtacaaatggacattgta 69
             ||||||||||||||||||||
Sbjct: 49812 tagtacaaatggacattgta 49793

>gb|AC124962.19| Medicago truncatula clone mth2-24d19, complete sequence
          Length = 126541

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   aactttcaactaaaaaacaa 90
            ||||||||||||||||||||
Sbjct: 8569 aactttcaactaaaaaacaa 8550

>gb|AC153125.10| Medicago truncatula clone mth2-74f16, complete sequence
          Length = 128458

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    aactttcaactaaaaaacaa 90
             ||||||||||||||||||||
Sbjct: 99316 aactttcaactaaaaaacaa 99297

>emb|AL592503.5| Human DNA sequence from clone RP11-267A5 on chromosome 13, complete
             sequence
          Length = 99970

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    caaatggacattgtagaact 74
             ||||||||||||||||||||
Sbjct: 42599 caaatggacattgtagaact 42618

>emb|AL157710.19| Human DNA sequence from clone RP11-219J23 on chromosome 10, complete
             sequence
          Length = 63017

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   ccaaagacaagaggcatcca 278
             ||||||||||||||||||||
Sbjct: 33434 ccaaagacaagaggcatcca 33453

>emb|AL138836.15| Human DNA sequence from clone RP11-88M19 on chromosome 9 Contains the
             5' end of the CDK5RAP2 gene for CDK5 regulatory subunit
             associated protein 2 (C48), the EGFL5 gene for
             EGF-like-domain, multiple 5 (MEGF9), an
             S-adenosylhomocysteine hydrolase (AHCY) pseudogene, the 3'
             end of a variant of the FBXW2 gene for  F-box and WD-40
             domain protein 2 (FBW2) and a CpG island, complete
             sequence
          Length = 188481

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   gaaggaccaaagacaagagg 272
             ||||||||||||||||||||
Sbjct: 94003 gaaggaccaaagacaagagg 94022

>gb|AC155227.3| Rhinolophus ferrumequinum clone VMRC7-4K1, complete sequence
          Length = 160979

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   agaaattacatctgggagaa 121
             ||||||||||||||||||||
Sbjct: 50259 agaaattacatctgggagaa 50240

>emb|CR931730.1| Medicago truncatula chromosome 5 clone  mth2-17o15, COMPLETE SEQUENCE
          Length = 89342

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    aactttcaactaaaaaacaa 90
             ||||||||||||||||||||
Sbjct: 77755 aactttcaactaaaaaacaa 77736

>emb|CR859484.1| Pongo pygmaeus mRNA; cDNA DKFZp459J2339 (from clone DKFZp459J2339)
          Length = 2261

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   tttcaactaaaaaacaacat 93
            ||||||||||||||||||||
Sbjct: 1429 tttcaactaaaaaacaacat 1410

>dbj|AK124898.1| Homo sapiens cDNA FLJ42908 fis, clone BRHIP3018797
          Length = 4653

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   tttcaactaaaaaacaacat 93
            ||||||||||||||||||||
Sbjct: 3839 tttcaactaaaaaacaacat 3820

>dbj|AK090859.1| Homo sapiens cDNA FLJ33540 fis, clone BRAMY2007613
          Length = 2030

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   tttcaactaaaaaacaacat 93
            ||||||||||||||||||||
Sbjct: 1211 tttcaactaaaaaacaacat 1192

>gb|AC139313.11| Medicago truncatula clone mth2-18l7, complete sequence
          Length = 91156

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    aactttcaactaaaaaacaa 90
             ||||||||||||||||||||
Sbjct: 89095 aactttcaactaaaaaacaa 89114

>emb|CR598019.1| full-length cDNA clone CS0DL007YG20 of B cells (Ramos cell line) Cot
            25-normalized of Homo sapiens (human)
          Length = 2012

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   tttcaactaaaaaacaacat 93
            ||||||||||||||||||||
Sbjct: 1229 tttcaactaaaaaacaacat 1210

>gb|AC018902.8| Homo sapiens chromosome 15 clone RP11-327C2 map 15Q21.2, complete
            sequence
          Length = 157226

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   tttcaactaaaaaacaacat 93
            ||||||||||||||||||||
Sbjct: 1103 tttcaactaaaaaacaacat 1122

>gb|AC010674.11| Homo sapiens chromosome 15 clone RP11-430B1 map 15q21.1, complete
              sequence
          Length = 214415

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tttcaactaaaaaacaacat 93
              ||||||||||||||||||||
Sbjct: 178323 tttcaactaaaaaacaacat 178342

>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 102     agaaattacatctgggagaa 121
               ||||||||||||||||||||
Sbjct: 1382927 agaaattacatctgggagaa 1382908

>emb|BX649310.6| Sminthopsis DNA sequence from clone RZPD668-281H15, complete sequence
          Length = 67497

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    tgtagaactttcaactaaaa 85
             ||||||||||||||||||||
Sbjct: 53605 tgtagaactttcaactaaaa 53624

>gb|AC131238.3| Homo sapiens 12 BAC RP11-136L23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 60500

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   gggaggggacaagggaagga 258
             ||||||||||||||||||||
Sbjct: 11164 gggaggggacaagggaagga 11145

>gb|AC132433.3| Mus musculus BAC clone RP23-214L14 from 13, complete sequence
          Length = 229555

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    caagggaaggaccaaagaca 267
              ||||||||||||||||||||
Sbjct: 108522 caagggaaggaccaaagaca 108503

>dbj|AB209505.1| Homo sapiens mRNA for Myosin Va variant protein
          Length = 10770

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   tttcaactaaaaaacaacat 93
            ||||||||||||||||||||
Sbjct: 9951 tttcaactaaaaaacaacat 9932

>emb|AL840637.9| Mouse DNA sequence from clone RP23-113H3 on chromosome 2, complete
             sequence
          Length = 217829

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   caagggaaggaccaaagaca 267
             ||||||||||||||||||||
Sbjct: 38401 caagggaaggaccaaagaca 38382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,861,970
Number of Sequences: 3902068
Number of extensions: 2861970
Number of successful extensions: 71178
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71136
Number of HSP's gapped (non-prelim): 42
length of query: 278
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 256
effective length of database: 17,147,199,772
effective search space: 4389683141632
effective search space used: 4389683141632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)