ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARGJ1_ANASP (Q8YVA8) Arginine biosynthesis bifunctional protein ... 28 5.7
2YC8B_METJA (P81319) Hypothetical protein MJ1282.2 28 7.4
3HBBC_TRENE (P45721) Hemoglobin beta-C subunit (Hemoglobin beta-C... 27 9.7
4YMM1_CAEEL (P34489) Hypothetical protein K01B6.1 27 9.7

>ARGJ1_ANASP (Q8YVA8) Arginine biosynthesis bifunctional protein argJ 1|
           [Includes: Glutamate N-acetyltransferase (EC 2.3.1.35)
           (Ornithine acetyltransferase) (Ornithine transacetylase)
           (OATase); Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate
          Length = 413

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 154 SRAAQQRNSSVLKHNRTYINDSLLALFNANDQTVWLCNAALVKRKIDA 297
           +RAA +  +S+     T  NDSL+AL N   +T  +        K++A
Sbjct: 212 TRAADRSFNSITVDGDTSTNDSLIALANGQSRTPAITEVGAESEKLEA 259



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>YC8B_METJA (P81319) Hypothetical protein MJ1282.2|
          Length = 179

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +2

Query: 32  ISITATTRQINNTNNDTYIYSCSNPCF*IVQITSQHWQLSHQGLPSKGTHQFLNTTAPT* 211
           +S   T+   NN+ N TYI    N  F  +      ++     +   G   F +TT+P  
Sbjct: 14  VSFINTSGYYNNSENVTYINMSMNGSFSGILYVKSSYKNYTITINESGNFVFNDTTSPIE 73

Query: 212 TTLFSHYS 235
             L ++YS
Sbjct: 74  VELLNNYS 81



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>HBBC_TRENE (P45721) Hemoglobin beta-C subunit (Hemoglobin beta-C chain)|
           (Beta-C-globin)
          Length = 146

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 160 AAQQRNSSVLKHNRTYINDSLLALFNANDQTVWLCNAALVKRKIDATDPSNFRM 321
           AA  +N+ V KH  T +N    A+ N +D T      +++  +    DP NF++
Sbjct: 52  AAIAQNAMVSKHGTTILNGLDRAVKNMDDITNTYAELSVLHSEKLHVDPDNFKL 105



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>YMM1_CAEEL (P34489) Hypothetical protein K01B6.1|
          Length = 732

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 100 QPMFLDSTNNKPTLATQPSRAAQQRNSSVLKHNRTYINDSLLAL 231
           +PM   S+   PT  TQP R   Q +S   + N    ND L  L
Sbjct: 234 RPMQGRSSPKSPTSPTQPGRRGSQASSLPSRRNTVSQNDLLATL 277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,335,151
Number of Sequences: 219361
Number of extensions: 802813
Number of successful extensions: 1575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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