>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 133    ccaacattggcaactcagccat 154
              ||||||||||||||||||||||
Sbjct: 442330 ccaacattggcaactcagccat 442309

>gb|AC154558.2| Mus musculus BAC clone RP23-240G18 from chromosome 13, complete
             sequence
          Length = 186758

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 10    aaaaatacttgcacattaatgc 31
             ||||||||||||||||||||||
Sbjct: 46528 aaaaatacttgcacattaatgc 46507

>gb|AC174082.3| Mus musculus BAC clone RP23-395H10 from chromosome 13, complete sequence
          Length = 208596

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 10     aaaaatacttgcacattaatgc 31
              ||||||||||||||||||||||
Sbjct: 151215 aaaaatacttgcacattaatgc 151194

>gb|AC113302.13| Mus musculus chromosome 5, clone RP23-431M7, complete sequence
          Length = 201427

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 40    aacagcaacaacaagacaaatcaat 64
             ||||||||||| |||||||||||||
Sbjct: 23322 aacagcaacaagaagacaaatcaat 23346

>gb|AC023480.7| Homo sapiens chromosome 3 clone RP11-399K19 map 3p, complete sequence
          Length = 199814

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 280   aagagaaaaatagatgcaaca 300
             |||||||||||||||||||||
Sbjct: 46858 aagagaaaaatagatgcaaca 46878

>gb|AC124189.3| Mus musculus BAC clone RP23-254C8 from 5, complete sequence
          Length = 150507

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 40    aacagcaacaacaagacaaatcaat 64
             ||||||||||| |||||||||||||
Sbjct: 42762 aacagcaacaagaagacaaatcaat 42738

>gb|AC016146.18| Homo sapiens 3 BAC RP11-327M20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 190456

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 280    aagagaaaaatagatgcaaca 300
              |||||||||||||||||||||
Sbjct: 126272 aagagaaaaatagatgcaaca 126292

>gb|AC018503.6|AC018503 Homo sapiens chromosome 3 clone RP11-41L18 map 3p, complete sequence
          Length = 191161

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 280    aagagaaaaatagatgcaaca 300
              |||||||||||||||||||||
Sbjct: 136941 aagagaaaaatagatgcaaca 136921

>gb|AC116691.12| Mus musculus chromosome 1, clone RP24-312I13, complete sequence
          Length = 154587

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    atgatacatatatatacagct 95
             |||||||||||||||||||||
Sbjct: 27638 atgatacatatatatacagct 27618

>gb|AC101854.8| Mus musculus chromosome 1, clone RP23-298H18, complete sequence
          Length = 190474

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    aaatcaataacacaaacaat 76
             ||||||||||||||||||||
Sbjct: 87360 aaatcaataacacaaacaat 87379

>gb|AC122798.3| Mus musculus BAC clone RP23-301A3 from 2, complete sequence
          Length = 206324

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    aagacaaatcaataacacaaacaa 75
             |||||||| |||||||||||||||
Sbjct: 65763 aagacaaaacaataacacaaacaa 65740

>emb|AL445245.12| Human DNA sequence from clone RP4-690O18 on chromosome 1, complete
             sequence
          Length = 51112

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    acatatatatacagctgcag 99
             ||||||||||||||||||||
Sbjct: 41627 acatatatatacagctgcag 41608

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 232     ttcaatgccaatgatcagaccgtt 255
               ||||||||||||| ||||||||||
Sbjct: 2170655 ttcaatgccaatggtcagaccgtt 2170678

>emb|AL672192.6| Zebrafish DNA sequence from clone BUSM1-87I4 Contains part of a gene
             for a novel glutaminase, part of a gene similar to STAT1
             (signal transducer and activator of transcription) and two
             CpG islands, complete sequence
          Length = 90875

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    tgatacatatatatacagct 95
             ||||||||||||||||||||
Sbjct: 43277 tgatacatatatatacagct 43296

>gb|AC104462.1| Homo sapiens chromosome 1 clone RP11-522M21, complete sequence
          Length = 183271

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     caatgatacatatatataca 92
              ||||||||||||||||||||
Sbjct: 118365 caatgatacatatatataca 118384

>emb|AL592562.18| Zebrafish DNA sequence from clone XX-85C7 in linkage group 19, complete
             sequence
          Length = 94129

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    tgatacatatatatacagct 95
             ||||||||||||||||||||
Sbjct: 50658 tgatacatatatatacagct 50677

>emb|BX547938.9| Zebrafish DNA sequence from clone DKEY-85K8 in linkage group 5,
             complete sequence
          Length = 162785

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   ttaagagaaaaatagatgca 297
             ||||||||||||||||||||
Sbjct: 36686 ttaagagaaaaatagatgca 36667

>emb|BX649377.8| Zebrafish DNA sequence from clone CH211-196J1 in linkage group 19,
             complete sequence
          Length = 217898

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    tgatacatatatatacagct 95
             ||||||||||||||||||||
Sbjct: 80612 tgatacatatatatacagct 80631

>gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, complete sequence
          Length = 205302

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     aagtataacagcaacaacaa 53
              ||||||||||||||||||||
Sbjct: 173218 aagtataacagcaacaacaa 173237

>gb|AC007760.6|AC007760 Drosophila melanogaster, chromosome 3R, region 89B-89B, BAC clone
              BACR37I18, complete sequence
          Length = 195037

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 24     attaatgcataagtataacagcaa 47
              ||||||| ||||||||||||||||
Sbjct: 189283 attaatgtataagtataacagcaa 189306

>gb|AC007647.6|AC007647 Drosophila melanogaster, chromosome 3R, region 89B-89C, BAC clone
             BACR05P04, complete sequence
          Length = 194335

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    attaatgcataagtataacagcaa 47
             ||||||| ||||||||||||||||
Sbjct: 99246 attaatgtataagtataacagcaa 99269

>emb|BX255877.14| Zebrafish DNA sequence from clone CH211-254C9, complete sequence
          Length = 152976

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   aacaatgatacatatatata 90
            ||||||||||||||||||||
Sbjct: 4490 aacaatgatacatatatata 4509

>gb|AC115078.11| Mus musculus chromosome 3, clone RP24-457B22, complete sequence
          Length = 179789

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     aacagcaacaacaagacaaa 59
              ||||||||||||||||||||
Sbjct: 117646 aacagcaacaacaagacaaa 117627

>gb|AE003712.1| Drosophila melanogaster chromosome 3R, section 50 of 118 of the complete
              sequence
          Length = 226200

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 24     attaatgcataagtataacagcaa 47
              ||||||| ||||||||||||||||
Sbjct: 188695 attaatgtataagtataacagcaa 188718

>emb|AL928607.8| Mouse DNA sequence from clone RP23-326J18 on chromosome 2, complete
             sequence
          Length = 128293

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 52    aagacaaatcaataacacaaacaa 75
             |||||||| |||||||||||||||
Sbjct: 14235 aagacaaaacaataacacaaacaa 14258


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,520,059
Number of Sequences: 3902068
Number of extensions: 4520059
Number of successful extensions: 119493
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119408
Number of HSP's gapped (non-prelim): 85
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)