ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYA_ARATH (P36428) Alanyl-tRNA synthetase, mitochondrial precurs... 35 0.074
2RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7 31 1.1
3HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH... 30 1.8
4PA2I_VIPAP (Q8JFG1) Phospholipase A2 inhibitor precursor (Vaspin... 28 6.9
5PA21B_VIPAZ (Q10754) Phospholipase A2, A chain precursor (Phosph... 28 6.9
6PA2I_VIPAE (P04084) Phospholipase A2 inhibitor (Vipoxin toxic co... 28 6.9
7LHR2A_RAT (Q75WE7) Loss of heterozygosity 11 chromosomal region ... 28 9.0

>SYA_ARATH (P36428) Alanyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.7)|
            (Alanine--tRNA ligase) (AlaRS)
          Length = 1003

 Score = 35.0 bits (79), Expect = 0.074
 Identities = 15/27 (55%), Positives = 23/27 (85%)
 Frame = -1

Query: 427  AQGQGSDASRVKEAMELATQIASMKLS 347
            A GQG+DAS+V+ A+++A+  ASMKL+
Sbjct: 977  ASGQGTDASQVQAALDMASSFASMKLN 1003



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>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7|
          Length = 695

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +1

Query: 163 PSAIPCSSTICPQLQSRFTSRLLSSLPGIGNDASTLLPKQTLDTSGSKSTLIKRPDESQQ 342
           PS  P  S   P   +  TS   ++       ASTL P    DT+GS S+    P  S  
Sbjct: 374 PSTFPNPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433

Query: 343 ISS 351
           ++S
Sbjct: 434 LAS 436



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>HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)|
           (Indole-3-acetamide hydrolase)
          Length = 462

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +3

Query: 327 RRVSTNQLSFIEAICVASSMASLTREASLP 416
           RR++TNQ++F+EA     ++A LTR+ SLP
Sbjct: 265 RRLATNQMTFVEA--DIPNVAELTRKVSLP 292



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>PA2I_VIPAP (Q8JFG1) Phospholipase A2 inhibitor precursor (Vaspin A chain)|
          Length = 138

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 380 ACYTDSFNEAELIC*DSSGLLISVLLEPEVSSVCLGSRVD 261
           A YT SF   +++C D+   L +V      +++CLG  V+
Sbjct: 78  ATYTYSFENGDIVCGDNDLCLRAVCECDRAAAICLGENVN 117



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>PA21B_VIPAZ (Q10754) Phospholipase A2, A chain precursor (Phospholipase A2|
           inhibitor) (PLA2-I complex A chain) (Vaspin A chain)
          Length = 138

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 380 ACYTDSFNEAELIC*DSSGLLISVLLEPEVSSVCLGSRVD 261
           A YT SF   +++C D+   L +V      +++CLG  V+
Sbjct: 78  ATYTYSFENGDIVCGDNDLCLRAVCECDRAAAICLGENVN 117



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>PA2I_VIPAE (P04084) Phospholipase A2 inhibitor (Vipoxin toxic component)|
           (Vipoxin A chain) (Inh)
          Length = 122

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 380 ACYTDSFNEAELIC*DSSGLLISVLLEPEVSSVCLGSRVD 261
           A YT SF   +++C D+   L +V      +++CLG  V+
Sbjct: 62  ATYTYSFENGDIVCGDNDLCLRAVCECDRAAAICLGENVN 101



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>LHR2A_RAT (Q75WE7) Loss of heterozygosity 11 chromosomal region 2 gene A|
           protein homolog (Mast cell surface antigen 1) (Masa-1)
          Length = 822

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 244 GIGNDASTLLPKQTLDTSGSKSTLIKRPDESQQISSASLKLSV 372
           GIG  AST L K     SG  +  I   D  Q  +  SLKL++
Sbjct: 420 GIGQGASTSLIKNIARVSGGTAEFITGKDRMQAKALGSLKLAL 462


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,339,860
Number of Sequences: 219361
Number of extensions: 992435
Number of successful extensions: 2614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2605
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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