>gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence
          Length = 1585

 Score =  119 bits (60), Expect = 6e-24
 Identities = 135/160 (84%)
 Strand = Plus / Minus

                                                                        
Query: 188  ctctctttctcaatattgtcttccgtggttcctttctgctcggtgtgtttcctgaactta 247
            |||||||||| |||||  |||| ||||| |||||| || ||||||   | |||||||  |
Sbjct: 1389 ctctctttcttaatatattcttgcgtggctcctttttggtcggtgccatccctgaaccca 1330

                                                                        
Query: 248  gggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacga 307
            | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |
Sbjct: 1329 gagaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcacca 1270

                                                    
Query: 308  ctgtaacaacagaaactccaacaataaaaggtaaaactgg 347
             || ||| |||||||||||||||||||  || ||||||||
Sbjct: 1269 gtgcaaccacagaaactccaacaataagcggaaaaactgg 1230

>gb|AY105873.1| Zea mays PCO094136 mRNA sequence
          Length = 809

 Score =  119 bits (60), Expect = 6e-24
 Identities = 135/160 (84%)
 Strand = Plus / Minus

                                                                       
Query: 188 ctctctttctcaatattgtcttccgtggttcctttctgctcggtgtgtttcctgaactta 247
           |||||||||| |||||  |||| ||||| |||||| || ||||||   | |||||||  |
Sbjct: 575 ctctctttcttaatatattcttgcgtggctcctttttggtcggtgccatccctgaaccca 516

                                                                       
Query: 248 gggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacga 307
           | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |
Sbjct: 515 gagaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcacca 456

                                                   
Query: 308 ctgtaacaacagaaactccaacaataaaaggtaaaactgg 347
            || ||| |||||||||||||||||||  || ||||||||
Sbjct: 455 gtgcaaccacagaaactccaacaataagcggaaaaactgg 416

>ref|NM_189191.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 241  gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 300
            |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| |||
Sbjct: 3524 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 3465

              
Query: 301  at 302
            ||
Sbjct: 3464 at 3463

>dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B11, full
            insert sequence
          Length = 1629

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 241  gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 300
            |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| |||
Sbjct: 1183 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 1124

              
Query: 301  at 302
            ||
Sbjct: 1123 at 1122

>emb|AJ310803.1|LCR310803 Lunularia cruciata mitochondrial partial nad4 gene for NADH
            dehydrogenase subunit 4, exons 1-2
          Length = 2152

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 321  aactccaacaataaaaggtaaaa 343
            |||||||||||||||||||||||
Sbjct: 2089 aactccaacaataaaaggtaaaa 2067

>emb|AJ310801.1|CCO310801 Corsinia coriandrina mitochondrial partial nad4 gene for NADH
            dehydrogenase subunit 4, exons 1-2
          Length = 2151

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 321  aactccaacaataaaaggtaaaa 343
            |||||||||||||||||||||||
Sbjct: 2088 aactccaacaataaaaggtaaaa 2066

>gb|U92838.1|MMSALH06 Mus musculus sialoadhesin gene, exons 8, 9, and 10
          Length = 1772

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 223 ctgctcggtgtgtttcctgaa 243
           |||||||||||||||||||||
Sbjct: 22  ctgctcggtgtgtttcctgaa 42

>gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosome 3, complete sequence
          Length = 187416

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 311    taacaacagaaactccaacaa 331
              |||||||||||||||||||||
Sbjct: 153736 taacaacagaaactccaacaa 153756

>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence
          Length = 105004

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 40     aaatattagtcaacaatggtacaaa 64
              |||||||||||||||||| ||||||
Sbjct: 101295 aaatattagtcaacaatgttacaaa 101319

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 241      gaacttagggaagtcattcctacagcgctctggtacaagtc 281
                |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 11023970 gaacctagggtagtcattcccacagcactttggtacaagtc 11024010

>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 241   gaacttagggaagtcattcctacagcgctctggtacaagtc 281
             |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 52852 gaacctagggtagtcattcccacagcactttggtacaagtc 52892

>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 241    gaacttagggaagtcattcctacagcgctctggtacaagtc 281
              |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 126812 gaacctagggtagtcattcccacagcactttggtacaagtc 126852

>gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome 3, complete sequence
          Length = 200505

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 311    taacaacagaaactccaacaa 331
              |||||||||||||||||||||
Sbjct: 170731 taacaacagaaactccaacaa 170711

>emb|AL831736.15| Mouse DNA sequence from clone RP23-32L15 on chromosome 2, complete
             sequence
          Length = 126358

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 223   ctgctcggtgtgtttcctgaa 243
             |||||||||||||||||||||
Sbjct: 11160 ctgctcggtgtgtttcctgaa 11140

>ref|XM_642090.1| Dictyostelium discoideum SNF2-related domain-containing protein
            (DDB0220518), partial mRNA
          Length = 9210

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 307  actgtaacaacagaaactccaaca 330
            ||||||||||||| ||||||||||
Sbjct: 8839 actgtaacaacagtaactccaaca 8862

>gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, complete sequence
          Length = 162238

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   ctttctcaatattgtcttcc 211
             ||||||||||||||||||||
Sbjct: 12002 ctttctcaatattgtcttcc 11983

>gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, complete sequence
          Length = 203478

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    ctttctcaatattgtcttcc 211
              ||||||||||||||||||||
Sbjct: 195772 ctttctcaatattgtcttcc 195753

>emb|AL158091.31| Human DNA sequence from clone RP5-824A14 on chromosome 20 Contains the
             5' end of the BTBD4 gene for BTB (POZ) domain containing
             4, part of a gene for a tissue plasminogen activator
             protein and two CpG islands, complete sequence
          Length = 41932

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   cctttctgctcggtgtgttt 237
             ||||||||||||||||||||
Sbjct: 12460 cctttctgctcggtgtgttt 12441

>emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in linkage group 18,
              complete sequence
          Length = 164758

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    tgtttcaggctctctttctc 198
              ||||||||||||||||||||
Sbjct: 128434 tgtttcaggctctctttctc 128415

>gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, complete sequence
          Length = 68440

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   tatgtttcaggctctctttc 196
             ||||||||||||||||||||
Sbjct: 64829 tatgtttcaggctctctttc 64810

>gb|AY016245.1| Crotalus cerastes tRNA-Met gene, partial sequence; and NADH
           dehydrogenase subunit 2 (ND2) gene, partial cds;
           mitochondrial genes for mitochondrial products
          Length = 702

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 313 acaacagaaactccaacaataaaa 336
           |||||||||||| |||||||||||
Sbjct: 275 acaacagaaactacaacaataaaa 298

>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence
          Length = 204294

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     tacaaaatattagtcaacaa 55
              ||||||||||||||||||||
Sbjct: 131842 tacaaaatattagtcaacaa 131823

>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence
          Length = 198167

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  tatgtttcaggctctctttc 196
            ||||||||||||||||||||
Sbjct: 2684 tatgtttcaggctctctttc 2665

>gb|AY704795.1| Crotalus totonacus isolate 3102 NADH dehydrogenase subunit 2 (ND2)
           gene, partial cds; mitochondrial
          Length = 671

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 313 acaacagaaactccaacaataaaa 336
           |||||||||||| |||||||||||
Sbjct: 235 acaacagaaactacaacaataaaa 258

>gb|AY704794.1| Crotalus totonacus isolate SD NADH dehydrogenase subunit 2 (ND2)
           gene, partial cds; mitochondrial
          Length = 658

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 313 acaacagaaactccaacaataaaa 336
           |||||||||||| |||||||||||
Sbjct: 222 acaacagaaactacaacaataaaa 245

>emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in linkage group 18,
             complete sequence
          Length = 145250

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tgtttcaggctctctttctc 198
             ||||||||||||||||||||
Sbjct: 91226 tgtttcaggctctctttctc 91207

>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      acaaaatattagtcaacaat 56
               ||||||||||||||||||||
Sbjct: 2555987 acaaaatattagtcaacaat 2555968

>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      aaaattacattgggaggtaa 111
               ||||||||||||||||||||
Sbjct: 2627713 aaaattacattgggaggtaa 2627694

>emb|BX897734.11| Zebrafish DNA sequence from clone CH211-194J14, complete sequence
          Length = 151729

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 312   aacaacagaaactccaacaataaa 335
             ||||||||||||||||| ||||||
Sbjct: 21799 aacaacagaaactccaaaaataaa 21822

>emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chromosome 3, complete
             sequence
          Length = 172826

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aaatattagtcaacaatggt 59
             ||||||||||||||||||||
Sbjct: 59691 aaatattagtcaacaatggt 59710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,550,982
Number of Sequences: 3902068
Number of extensions: 3550982
Number of successful extensions: 60500
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60418
Number of HSP's gapped (non-prelim): 82
length of query: 347
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 325
effective length of database: 17,147,199,772
effective search space: 5572839925900
effective search space used: 5572839925900
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)