>gb|DQ019632.1| Triticum aestivum nuclear transportin (TRN-SR) mRNA, complete cds
          Length = 3319

 Score =  545 bits (275), Expect = e-152
 Identities = 335/355 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggcagatgtttacataaaaagaattggtggccacctcaattcacaaagttaggctggcca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3278 ggcagatgtttacataaaaagaattggtggccacctcaattcacaaagttaagctggcca 3219

                                                                        
Query: 61   gctattacaaaattcaggaccagggcagatcacaatccgcgtgatctcctagttgagtac 120
            || |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 3218 gccattacaaaattcaggaccagggcagatcacaatcggtgtgatctcctagttgagtac 3159

                                                                        
Query: 121  gtataccactgatctcttccagataataatacaacacaattttcctcccacatacataaa 180
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3158 gtataccactgatctcttccagataataatacaacacaactttcctcccacatacataaa 3099

                                                                        
Query: 181  tgcacgacacatgtacagagacaagcacgatatgaatgacaatgactactggctgaccta 240
            |||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 3098 tgcacgacgcatgtacagagacaaacacaaaatgaatgacaatgactactggctgaccta 3039

                                                                        
Query: 241  tctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaaccgtatgaatg 300
            |||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 3038 tctatcctctaaaagaatctgaacaatatgatggatgccgcaactcaaaccgtatgaaag 2979

                                                                   
Query: 301  ggtaaaaaatccagatggcgcacaccgactccatcacgggctttcaactggtctt 355
            || || | || ||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct: 2978 gggaagatattcagatggcgtacacggacaccatcacgggctttcaactggtctt 2924



 Score =  133 bits (67), Expect = 6e-28
 Identities = 92/99 (92%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                        
Query: 366  tccagtcatcatgaatgccgcggagcaagtgtgaaggttaagtcatgaggctgcaaagca 425
            ||||||||||||||||||||||||||||  |||||||  |||||||||||||||||||||
Sbjct: 2911 tccagtcatcatgaatgccgcggagcaaccgtgaaggccaagtcatgaggctgcaaagca 2852

                                                   
Query: 426  gcttgaa-tatatcctgcaccgctttgttccgtctgcaa 463
            ||||||| |||| |||||||||||||||| |||||||||
Sbjct: 2851 gcttgaactataccctgcaccgctttgtttcgtctgcaa 2813

>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
             sequence
          Length = 163279

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Plus

                                                                     
Query: 236   acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 291
             ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 14955 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 15006



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 146   ataatacaacacaattttcctcccacataca 176
             |||||||||||||| |||||||||| |||||
Sbjct: 14864 ataatacaacacaactttcctcccagataca 14894

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 146      ataatacaacacaattttcctcccacataca 176
                |||||||||||||| |||||||||| |||||
Sbjct: 17357415 ataatacaacacaactttcctcccagataca 17357385



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Minus

                                                                        
Query: 236      acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 291
                ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 17357324 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 17357273

>dbj|AK102336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091A14, full
            insert sequence
          Length = 3529

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 146  ataatacaacacaattttcctcccacataca 176
            |||||||||||||| |||||||||| |||||
Sbjct: 3364 ataatacaacacaactttcctcccagataca 3334



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Minus

                                                                    
Query: 236  acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 291
            ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 3273 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 3222

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 146      ataatacaacacaattttcctcccacataca 176
                |||||||||||||| |||||||||| |||||
Sbjct: 17366455 ataatacaacacaactttcctcccagataca 17366425



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Minus

                                                                        
Query: 236      acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 291
                ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 17366364 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 17366313

>gb|AC092704.10| Homo sapiens chromosome 18, clone RP11-687D19, complete sequence
          Length = 185257

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 246    cctctaaagaaatctgaacaat 267
              ||||||||||||||||||||||
Sbjct: 152288 cctctaaagaaatctgaacaat 152267

>gb|AC101883.6| Mus musculus chromosome 1, clone RP23-402F17, complete sequence
          Length = 191721

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 169    cacatacataaatgcacgacacatgtaca 197
              |||||| |||||||||| |||||||||||
Sbjct: 152148 cacatagataaatgcaccacacatgtaca 152120

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 156    acaattttcctcccacatacataaa 180
              ||||||||||||| |||||||||||
Sbjct: 693488 acaattttcctccgacatacataaa 693512

>emb|BX649569.5| Human DNA sequence from clone RP11-204I2 on chromosome 9 Contains part
             of the gene for a novel protein similar to contactin
             associated protein-like 3 (CNTNAP3), complete sequence
          Length = 162657

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   tcctctaaagaaatctgaac 264
             ||||||||||||||||||||
Sbjct: 39964 tcctctaaagaaatctgaac 39945

>emb|AL162233.14| Human DNA sequence from clone RP11-292B8 on chromosome 9 Contains a
              pseudogene similar to part of contactin associated
              protein-like 3 (CNTNAP3), an RNA binding motif protein 17
              (RBM17) pseudogene and a CpG island, complete sequence
          Length = 179833

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    tcctctaaagaaatctgaac 264
              ||||||||||||||||||||
Sbjct: 102456 tcctctaaagaaatctgaac 102475

>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3
             Contains the 3' part of a novel gene, complete sequence
          Length = 88509

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     agatgtttacataaaaagaa 23
             ||||||||||||||||||||
Sbjct: 40339 agatgtttacataaaaagaa 40320

>emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid
          Length = 121587

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    agttaggctggccagctatt 66
             ||||||||||||||||||||
Sbjct: 92478 agttaggctggccagctatt 92459

>emb|AL844602.6| Mouse DNA sequence from clone RP24-251H18 on chromosome 4, complete
             sequence
          Length = 116028

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   atctatcctctaaagaaatc 259
             ||||||||||||||||||||
Sbjct: 16666 atctatcctctaaagaaatc 16685

>gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete sequence
          Length = 136333

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 151   acaacacaattttcctcccacata 174
             ||||||||||||| ||||||||||
Sbjct: 54476 acaacacaatttttctcccacata 54453

>gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosome 16, complete
             sequence
          Length = 175409

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   aactcaaaccgtatgaatgggtaa 305
             |||||||||||||| |||||||||
Sbjct: 50932 aactcaaaccgtataaatgggtaa 50955

>gb|AC017078.8| Homo sapiens BAC clone RP11-457N9 from 2, complete sequence
          Length = 193979

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   caacacaattttcctcccac 171
             ||||||||||||||||||||
Sbjct: 78470 caacacaattttcctcccac 78451

>gb|AY106889.1| Zea mays PCO108418 mRNA sequence
          Length = 629

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 233 ctgacctatctatcctctaaagaaatctgaac 264
           ||||||||||||| |||| || ||||||||||
Sbjct: 377 ctgacctatctatgctctgaacaaatctgaac 346

>emb|BX537149.1| Mouse DNA sequence from clone RP23-251H18 on chromosome 4, complete
             sequence
          Length = 112029

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   atctatcctctaaagaaatc 259
             ||||||||||||||||||||
Sbjct: 14667 atctatcctctaaagaaatc 14686

>emb|BX005035.9| Human DNA sequence from clone RP11-133G22 on chromosome 9, complete
              sequence
          Length = 146143

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    tcctctaaagaaatctgaac 264
              ||||||||||||||||||||
Sbjct: 106253 tcctctaaagaaatctgaac 106272


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,200,896
Number of Sequences: 3902068
Number of extensions: 4200896
Number of successful extensions: 72443
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72349
Number of HSP's gapped (non-prelim): 93
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)