ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C90D2_ORYSA (Q94IW5) Cytochrome P450 90D2 (EC 1.14.-.-) (C6-oxid... 29 3.5
2SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cel... 28 4.6

>C90D2_ORYSA (Q94IW5) Cytochrome P450 90D2 (EC 1.14.-.-) (C6-oxidase)|
          Length = 490

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 45  SLPLPTPGERKYRLLQALKFLASYLRYLV 131
           SLP+  PG R YR LQA K +A  ++ ++
Sbjct: 228 SLPIKLPGTRLYRSLQAKKKMARLIQRII 256



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>SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cell wall protein|
           1)
          Length = 561

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 218 SSHMQAPSGKSSHPRSFSANGTSS 289
           S+H Q  S +S HPR FSAN   S
Sbjct: 344 SAHTQNSSAQSPHPRVFSANSAFS 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,873,327
Number of Sequences: 219361
Number of extensions: 616404
Number of successful extensions: 1297
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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