>gb|AC093511.4| Homo sapiens chromosome 16 clone CTD-2507C6, complete sequence
          Length = 189250

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 28     tgctatttgcagtgtacacaa 48
              |||||||||||||||||||||
Sbjct: 131021 tgctatttgcagtgtacacaa 131041

>gb|AC164660.3| Pan troglodytes BAC clone CH251-50D16 from chromosome unknown, complete
              sequence
          Length = 246546

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgctatttgcagtgtacacaa 48
              |||||||||||||||||||||
Sbjct: 118814 tgctatttgcagtgtacacaa 118794

>gb|AC147143.2| Pan troglodytes BAC clone CH251-267L18 from Y, complete sequence
          Length = 187629

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aaaaaggtgagctggtatca 241
             ||||||||||||||||||||
Sbjct: 73436 aaaaaggtgagctggtatca 73455

>gb|AC006338.6| Homo sapiens BAC clone RP11-539D10 from Y, complete sequence
          Length = 175990

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   aaaaaggtgagctggtatca 241
             ||||||||||||||||||||
Sbjct: 58020 aaaaaggtgagctggtatca 58001

>gb|AC147114.2| Pan troglodytes BAC clone CH251-548O14 from Y, complete sequence
          Length = 229006

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    aaaaaggtgagctggtatca 241
              ||||||||||||||||||||
Sbjct: 223188 aaaaaggtgagctggtatca 223207

>gb|AC147515.1| Pan troglodytes BAC clone CH251-558O8 from Y, complete sequence
          Length = 209207

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    aaaaaggtgagctggtatca 241
              ||||||||||||||||||||
Sbjct: 130992 aaaaaggtgagctggtatca 130973



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aaaaaggtgagctggtatca 241
             ||||||||||||||||||||
Sbjct: 13465 aaaaaggtgagctggtatca 13484

>ref|XM_538345.2| PREDICTED: Canis familiaris similar to transcription factor 20
            isoform 2, transcript variant 1 (LOC481224), mRNA
          Length = 5880

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  aaaaggtgagctggtatcag 242
            ||||||||||||||||||||
Sbjct: 4224 aaaaggtgagctggtatcag 4243

>ref|XM_852361.1| PREDICTED: Canis familiaris similar to transcription factor 20
            isoform 2, transcript variant 2 (LOC481224), mRNA
          Length = 6027

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  aaaaggtgagctggtatcag 242
            ||||||||||||||||||||
Sbjct: 4224 aaaaggtgagctggtatcag 4243

>emb|Z93379.1|CEF21H7 Caenorhabditis elegans Cosmid F21H7, complete sequence
          Length = 28075

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   aaattgcacgtaccaaaaaa 294
             ||||||||||||||||||||
Sbjct: 16268 aaattgcacgtaccaaaaaa 16249

>gb|AC098737.3| Mus musculus BAC clone RP23-122D16 from 1, complete sequence
          Length = 212615

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   aataacaacatccttcacaa 127
             ||||||||||||||||||||
Sbjct: 82558 aataacaacatccttcacaa 82577

>gb|AC139191.1| Pan troglodytes BAC clone RP43-32G19 from Y, complete sequence
          Length = 170201

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    aaaaaggtgagctggtatca 241
              ||||||||||||||||||||
Sbjct: 167450 aaaaaggtgagctggtatca 167431



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aaaaaggtgagctggtatca 241
             ||||||||||||||||||||
Sbjct: 34133 aaaaaggtgagctggtatca 34152

>gb|AC129471.1| Homo sapiens chromosome 5 clone RP11-352J21, complete sequence
          Length = 180334

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    cagcagcctcacaactgttcgaat 105
             ||||||||||||||||||| ||||
Sbjct: 53189 cagcagcctcacaactgttagaat 53166

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 222      aaaaaggtgagctggtatca 241
                ||||||||||||||||||||
Sbjct: 11334781 aaaaaggtgagctggtatca 11334762



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 222      aaaaaggtgagctggtatca 241
                ||||||||||||||||||||
Sbjct: 11217254 aaaaaggtgagctggtatca 11217273



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     aaaaaggtgagctggtatca 241
               ||||||||||||||||||||
Sbjct: 3436194 aaaaaggtgagctggtatca 3436175



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     aaaaaggtgagctggtatca 241
               ||||||||||||||||||||
Sbjct: 3249105 aaaaaggtgagctggtatca 3249124

>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 217     caccgaaaaaggtgagctgg 236
               ||||||||||||||||||||
Sbjct: 2672885 caccgaaaaaggtgagctgg 2672904

>gb|AC113353.2| Homo sapiens chromosome 5 clone CTD-2638F23, complete sequence
          Length = 39841

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    cagcagcctcacaactgttcgaat 105
             ||||||||||||||||||| ||||
Sbjct: 25374 cagcagcctcacaactgttagaat 25351

>gb|AC016617.6| Homo sapiens chromosome 5 clone CTD-2239O16, complete sequence
          Length = 114972

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 82  cagcagcctcacaactgttcgaat 105
           ||||||||||||||||||| ||||
Sbjct: 954 cagcagcctcacaactgttagaat 931

>gb|AC006983.4|AC006983 Homo sapiens BAC clone RP11-70G12 from Y, complete sequence
          Length = 180345

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   aaaaaggtgagctggtatca 241
             ||||||||||||||||||||
Sbjct: 28124 aaaaaggtgagctggtatca 28105

>gb|AC146477.3| Pan troglodytes BAC clone CH251-514B8 from chromosome y, complete
             sequence
          Length = 170833

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aaaaaggtgagctggtatca 241
             ||||||||||||||||||||
Sbjct: 78354 aaaaaggtgagctggtatca 78373

>gb|AC008153.5|AC008153 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence,
            complete sequence
          Length = 117296

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 379  catctgcttgagcttctccc 398
            ||||||||||||||||||||
Sbjct: 5924 catctgcttgagcttctccc 5905

>gb|AC073395.6|AC073395 Arabidopsis thaliana chromosome 3 BAC F11B9 genomic sequence, complete
              sequence
          Length = 103517

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 379    catctgcttgagcttctccc 398
              ||||||||||||||||||||
Sbjct: 100555 catctgcttgagcttctccc 100536

>gb|AC010089.4|AC010089 Homo sapiens BAC clone RP11-290O3 from Y, complete sequence
          Length = 103356

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aaaaaggtgagctggtatca 241
             ||||||||||||||||||||
Sbjct: 34060 aaaaaggtgagctggtatca 34079

>gb|AC053490.2|AC053490 Homo sapiens BAC clone RP11-140H23 from Y, complete sequence
          Length = 103432

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  aaaaaggtgagctggtatca 241
            ||||||||||||||||||||
Sbjct: 1153 aaaaaggtgagctggtatca 1172

>gb|AC005520.2|AC005520 Homo sapiens PAC clone RP5-1021I20 from 14q24.3, complete sequence
          Length = 151123

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    cctccatccctgcaggctgg 359
              ||||||||||||||||||||
Sbjct: 128461 cctccatccctgcaggctgg 128480

>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     aaaaaggtgagctggtatca 241
               ||||||||||||||||||||
Sbjct: 3088700 aaaaaggtgagctggtatca 3088681



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     aaaaaggtgagctggtatca 241
               ||||||||||||||||||||
Sbjct: 2959637 aaaaaggtgagctggtatca 2959656



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     aaaaaggtgagctggtatca 241
               ||||||||||||||||||||
Sbjct: 1473024 aaaaaggtgagctggtatca 1473005



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     aaaaaggtgagctggtatca 241
               ||||||||||||||||||||
Sbjct: 1325914 aaaaaggtgagctggtatca 1325933

>gb|AC092580.3| Homo sapiens BAC clone RP11-16D24 from 2, complete sequence
          Length = 120492

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 248   agctaagctgcgcttgaattctccttca 275
             ||||||||||| ||||||||| ||||||
Sbjct: 21476 agctaagctgctcttgaattcgccttca 21449

>gb|AC137549.1| Homo sapiens chromosome 5 clone RP11-159K7, complete sequence
          Length = 138494

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    cagcagcctcacaactgttcgaat 105
             ||||||||||||||||||| ||||
Sbjct: 93730 cagcagcctcacaactgttagaat 93707

>gb|AF164343.1|AF164343 Homo sapiens chromosome Y BAC clone 148I14 from Deleted in Azoospermia
             (DAZ) locus
          Length = 85674

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   aaaaaggtgagctggtatca 241
             ||||||||||||||||||||
Sbjct: 58747 aaaaaggtgagctggtatca 58728

>gb|AC000021.1|HSAC000021 Origins of the DAZ gene cluster on the human Y chromosome: an autosomal
             gene was transposed, then repeatedly amplified and pruned,
             complete sequence
          Length = 40328

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   aaaaaggtgagctggtatca 241
             ||||||||||||||||||||
Sbjct: 30256 aaaaaggtgagctggtatca 30237

>gb|AC000022.1|AC000022 Genomic sequence from Human Y, complete sequence
          Length = 43795

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  aaaaaggtgagctggtatca 241
            ||||||||||||||||||||
Sbjct: 2371 aaaaaggtgagctggtatca 2352

>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 217     caccgaaaaaggtgagctgg 236
               ||||||||||||||||||||
Sbjct: 1575660 caccgaaaaaggtgagctgg 1575679


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,408,655
Number of Sequences: 3902068
Number of extensions: 4408655
Number of successful extensions: 72648
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72489
Number of HSP's gapped (non-prelim): 159
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)