ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41d07 |
|---|---|
| Clone Library Name | barley_pub |
>RT22_HUMAN (P82650) Mitochondrial 28S ribosomal protein S22 (S22mt) (MRP-S22)| Length = 360 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -3 Query: 399 QPVSCSQTIKHQRTRFRKFCATYRVPEKRQPVFLYEKVEIVETR 268 QP+ CS + R RF A PE ++P F+ E+V+ + T+ Sbjct: 38 QPLPCSFEMGLPRRRFSSEAAESGSPETKKPTFMDEEVQSILTK 81
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = -1 Query: 128 AMFAVIFEHIHSGRSNRDYQYAAELLLV---HMVCSFK*ILQLY 6 A FAV+ I +GR+ Y+Y EL+ H + S+ +L LY Sbjct: 260 AYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLY 303
>TLK2_MOUSE (O55047) Serine/threonine-protein kinase tousled-like 2 (EC| 2.7.11.1) (Tousled-like kinase 2) Length = 718 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -1 Query: 356 DSESFVPPTVYLRNDNLYFYMRK*KLLRQDEAPS*ATQMEN 234 D++SF Y ++L FY+++ KL+ + EA S Q+ N Sbjct: 482 DTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVN 522
>TLK2_HUMAN (Q86UE8) Serine/threonine-protein kinase tousled-like 2 (EC| 2.7.11.1) (Tousled-like kinase 2) (PKU-alpha) Length = 772 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -1 Query: 356 DSESFVPPTVYLRNDNLYFYMRK*KLLRQDEAPS*ATQMEN 234 D++SF Y ++L FY+++ KL+ + EA S Q+ N Sbjct: 536 DTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVN 576
>VG54_BPT4 (P13341) Tail-tube assembly protein Gp54| Length = 320 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +2 Query: 206 FKRSFIYLCYFPFVSLRMVLRLVSTISTFSYKNTG 310 F+R+ ++ C F L+S+IS FSY N G Sbjct: 16 FQRNNMFSCVFATTPSTKSSSLISSISNFSYNNLG 50
>GERKB_BACSU (P49940) Spore germination protein KB| Length = 373 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/31 (32%), Positives = 20/31 (64%) Frame = +2 Query: 215 SFIYLCYFPFVSLRMVLRLVSTISTFSYKNT 307 SF+Y+ YF +++ R++ + TF+Y +T Sbjct: 83 SFLYILYFAYIAARVLRDFGEMLLTFAYHDT 113
>OL147_MOUSE (Q60886) Olfactory receptor 147 (Olfactory receptor 7E) (Olfactory| receptor 164-1) (Odorant receptor M3) Length = 317 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +2 Query: 206 FKRSFIYLCYFPFVSLRMVLRLVSTISTFSYKNTGC 313 F SFI LCY S +M++ VS ++ SY GC Sbjct: 67 FNLSFIDLCYSSVFSPKMLINFVSEKNSISY--AGC 100
>XYLA_SALTY (Q8ZL90) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 27.3 bits (59), Expect = 8.9 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +3 Query: 39 HVYQQKFSGILIVSVAPSRVNMFK-DY---SKHCFLKNLGK*TVILYKFIHLGSDANTIL 206 H ++ F G L++ P + DY + + FLK G L K I + +AN Sbjct: 219 HKHKMGFQGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFG-----LEKEIKVNIEANHAT 273 Query: 207 LKGHSF 224 L GHSF Sbjct: 274 LAGHSF 279
>XYLA_SALTI (Q7C637) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 27.3 bits (59), Expect = 8.9 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +3 Query: 39 HVYQQKFSGILIVSVAPSRVNMFK-DY---SKHCFLKNLGK*TVILYKFIHLGSDANTIL 206 H ++ F G L++ P + DY + + FLK G L K I + +AN Sbjct: 219 HKHKMGFQGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFG-----LEKEIKVNIEANHAT 273 Query: 207 LKGHSF 224 L GHSF Sbjct: 274 LAGHSF 279
>XYLA_KLEPN (P29442) Xylose isomerase (EC 5.3.1.5) (XI)| Length = 440 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = +3 Query: 39 HVYQQKFSGILIVSVAPSRVNMFK-DYSK---HCFLKNLGK*TVILYKFIHLGSDANTIL 206 H ++ F G L++ P + DY + FLK G L K I L +AN Sbjct: 219 HKHKIGFKGTLLIEPKPQEPTKHQYDYDASTVYGFLKQFG-----LEKEIKLNIEANHAT 273 Query: 207 LKGHSF 224 L GHSF Sbjct: 274 LAGHSF 279
>XYLA_ECOLI (P00944) Xylose isomerase (EC 5.3.1.5) (D-xylulose keto-isomerase)| Length = 440 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = +3 Query: 39 HVYQQKFSGILIVSVAPSRVNMFK-DYSK---HCFLKNLGK*TVILYKFIHLGSDANTIL 206 H ++ F G L++ P + DY + FLK G L K I L +AN Sbjct: 219 HKHKIGFQGTLLIEPKPQEPTKHQYDYDAATVYGFLKQFG-----LEKEIKLNIEANHAT 273 Query: 207 LKGHSF 224 L GHSF Sbjct: 274 LAGHSF 279
>XYLA_ECOL6 (Q8FCE3) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = +3 Query: 39 HVYQQKFSGILIVSVAPSRVNMFK-DYSK---HCFLKNLGK*TVILYKFIHLGSDANTIL 206 H ++ F G L++ P + DY + FLK G L K I L +AN Sbjct: 219 HKHKIGFQGTLLIEPKPQEPTKHQYDYDAATVYGFLKQFG-----LEKEIKLNIEANHAT 273 Query: 207 LKGHSF 224 L GHSF Sbjct: 274 LAGHSF 279
>XYLA_ECO57 (Q7A9X4) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = +3 Query: 39 HVYQQKFSGILIVSVAPSRVNMFK-DYSK---HCFLKNLGK*TVILYKFIHLGSDANTIL 206 H ++ F G L++ P + DY + FLK G L K I L +AN Sbjct: 219 HKHKIGFQGTLLIEPKPQEPTKHQYDYDAATVYGFLKQFG-----LEKEIKLNIEANHAT 273 Query: 207 LKGHSF 224 L GHSF Sbjct: 274 LAGHSF 279 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,194,699 Number of Sequences: 219361 Number of extensions: 991462 Number of successful extensions: 1889 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1871 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1889 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
