ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC124850.2| Homo sapiens chromosome 5 clone CTD-2166H5, compl... 46 0.088
2gb|AC129064.1| Homo sapiens chromosome 5 clone CTC-227K1, comple... 46 0.088
3gb|AC138411.1| Homo sapiens chromosome 5 clone RP11-864N22, comp... 46 0.088
4gb|AC009079.4|AC009079 Homo sapiens chromosome 16 clone RP11-340... 46 0.088
5gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosom... 44 0.35
6gb|AC125006.9| Mus musculus chromosome 3, clone RP24-157K20, com... 44 0.35
7gb|AC101813.5| Mus musculus chromosome 1, clone RP24-315D8, comp... 44 0.35
8emb|CR854992.5| Zebrafish DNA sequence from clone DKEYP-30C3 in ... 44 0.35
9emb|CR391942.8| Zebrafish DNA sequence from clone DKEY-191H21 in... 44 0.35
10emb|BX004994.6| Zebrafish DNA sequence from clone DKEY-24J15 in ... 44 0.35
11gb|AE006823.1| Sulfolobus solfataricus P2 section 182 of 272 of ... 42 1.4
12emb|BX548038.9| Zebrafish DNA sequence from clone DKEY-219C10 in... 42 1.4
13emb|BX571708.4| Zebrafish DNA sequence from clone DKEYP-74B2, co... 42 1.4
14gb|AC020641.8| Homo sapiens chromosome 10 clone RP11-222A11, com... 42 1.4
15dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 42 1.4
16gb|AC090771.4| Homo sapiens chromosome 18, clone RP11-795H16, co... 42 1.4
17gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complet... 42 1.4
18gb|AC013402.9| Homo sapiens BAC clone RP11-134N15 from 2, comple... 42 1.4
19gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone ... 42 1.4
20emb|AL929457.12| Zebrafish DNA sequence from clone CH211-153I8 i... 42 1.4
21emb|CT010565.14| Mouse DNA sequence from clone RP23-263E11 on ch... 42 1.4
22emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chr... 42 1.4
23gb|AC121842.3| Mus musculus BAC clone RP24-80L24 from chromosome... 40 5.4
24gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p... 40 5.4
25gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, comp... 40 5.4
26gb|AC139728.3| Carollia perspicillata clone 29G20, complete sequ... 40 5.4
27emb|AL356575.8| Human DNA sequence from clone RP11-340C20 on chr... 40 5.4
28emb|AL162574.14| Human DNA sequence from clone RP11-282A11 on ch... 40 5.4
29emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in l... 40 5.4
30gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, com... 40 5.4
31emb|BX537135.9| Zebrafish DNA sequence from clone DKEY-57B1 in l... 40 5.4
32gb|AC115100.3| Homo sapiens chromosome 18, clone RP11-237L15, co... 40 5.4
33gb|AC091317.3| Homo sapiens chromosome 18, clone CTD-2338I4, com... 40 5.4
34gb|AC016909.9| Homo sapiens BAC clone RP11-458A7 from 2, complet... 40 5.4
35emb|BX842670.5| Zebrafish DNA sequence from clone DKEY-195A13 in... 40 5.4
36emb|AL845550.13| Zebrafish DNA sequence from clone CH211-121D13 ... 40 5.4
37emb|AL117202.1|CEY47D3A Caenorhabditis elegans YAC Y47D3A, compl... 40 5.4
38gb|AC102249.16| Mus musculus chromosome 19, clone RP24-160D21, c... 40 5.4
39emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in... 40 5.4
40gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 40 5.4 
>gb|AC124850.2| Homo sapiens chromosome 5 clone CTD-2166H5, complete sequence
          Length = 120112

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 218    ttcatttatttgtgttattttccattt 244
              ||||||||||||||||| |||||||||
Sbjct: 118894 ttcatttatttgtgttaatttccattt 118920
to top
>gb|AC129064.1| Homo sapiens chromosome 5 clone CTC-227K1, complete sequence
          Length = 24517

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 218   ttcatttatttgtgttattttccattt 244
             ||||||||||||||||| |||||||||
Sbjct: 10618 ttcatttatttgtgttaatttccattt 10592
to top
>gb|AC138411.1| Homo sapiens chromosome 5 clone RP11-864N22, complete sequence
          Length = 170816

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 218   ttcatttatttgtgttattttccattt 244
             ||||||||||||||||| |||||||||
Sbjct: 35531 ttcatttatttgtgttaatttccattt 35505
to top
>gb|AC009079.4|AC009079 Homo sapiens chromosome 16 clone RP11-340B7, complete sequence
          Length = 199851

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 218   ttcatttatttgtgttattttccattt 244
             |||||||||||||||||||||| ||||
Sbjct: 86657 ttcatttatttgtgttattttcaattt 86631
to top
>gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosome 1, complete sequence
          Length = 188836

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 288   ctttctcatataaaaatacagg 309
             ||||||||||||||||||||||
Sbjct: 62938 ctttctcatataaaaatacagg 62917
to top
>gb|AC125006.9| Mus musculus chromosome 3, clone RP24-157K20, complete sequence
          Length = 169078

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 191   tgctaacaccatccttttaaaa 212
             ||||||||||||||||||||||
Sbjct: 75135 tgctaacaccatccttttaaaa 75114
to top
>gb|AC101813.5| Mus musculus chromosome 1, clone RP24-315D8, complete sequence
          Length = 159286

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 288   ctttctcatataaaaatacagg 309
             ||||||||||||||||||||||
Sbjct: 71651 ctttctcatataaaaatacagg 71630
to top
>emb|CR854992.5| Zebrafish DNA sequence from clone DKEYP-30C3 in linkage group 5,
             complete sequence
          Length = 104348

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 206   tttaaaaggtcattcatttatttgtgttat 235
             |||||||||||||||| |||||||| ||||
Sbjct: 56201 tttaaaaggtcattcaattatttgtattat 56172
to top
>emb|CR391942.8| Zebrafish DNA sequence from clone DKEY-191H21 in linkage group 5,
            complete sequence
          Length = 25485

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 206  tttaaaaggtcattcatttatttgtgttat 235
            |||||||||||||||| |||||||| ||||
Sbjct: 3680 tttaaaaggtcattcaattatttgtattat 3651
to top
>emb|BX004994.6| Zebrafish DNA sequence from clone DKEY-24J15 in linkage group 22,
              complete sequence
          Length = 211945

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 112    attacagcaaacattgctttct 133
              ||||||||||||||||||||||
Sbjct: 157689 attacagcaaacattgctttct 157668
to top
>gb|AE006823.1| Sulfolobus solfataricus P2 section 182 of 272 of the complete genome
          Length = 10984

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 224  tatttgtgttattttccattt 244
            |||||||||||||||||||||
Sbjct: 9658 tatttgtgttattttccattt 9678
to top
>emb|BX548038.9| Zebrafish DNA sequence from clone DKEY-219C10 in linkage group 9,
              complete sequence
          Length = 173526

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 215    tcattcatttatttgtgttattttc 239
              |||||||||||||||| ||||||||
Sbjct: 130824 tcattcatttatttgttttattttc 130848
to top
>emb|BX571708.4| Zebrafish DNA sequence from clone DKEYP-74B2, complete sequence
          Length = 193197

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     atagtctctgttgctccttcc 92
              |||||||||||||||||||||
Sbjct: 111317 atagtctctgttgctccttcc 111297
to top
>gb|AC020641.8| Homo sapiens chromosome 10 clone RP11-222A11, complete sequence
          Length = 166098

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 221   atttatttgtgttattttcca 241
             |||||||||||||||||||||
Sbjct: 23762 atttatttgtgttattttcca 23782
to top
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 217     attcatttatttgtgttattttccatttg 245
               |||||||||||||| | ||||||||||||
Sbjct: 2201932 attcatttatttgtttgattttccatttg 2201904
to top
>gb|AC090771.4| Homo sapiens chromosome 18, clone RP11-795H16, complete sequence
          Length = 186031

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 204   cttttaaaaggtcattcatttattt 228
             |||||||||||||||| ||||||||
Sbjct: 39801 cttttaaaaggtcatttatttattt 39777
to top
>gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complete sequence
          Length = 162015

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 215   tcattcatttatttgtgttattttc 239
             ||||| |||||||||||||||||||
Sbjct: 26161 tcatttatttatttgtgttattttc 26185
to top
>gb|AC013402.9| Homo sapiens BAC clone RP11-134N15 from 2, complete sequence
          Length = 177882

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 213    ggtcattcatttatttgtgtt 233
              |||||||||||||||||||||
Sbjct: 117804 ggtcattcatttatttgtgtt 117824
to top
>gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone rp23-304j8, complete
             sequence
          Length = 163774

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 280   aatttctactttctcatataaaaat 304
             |||||||| ||||||||||||||||
Sbjct: 97831 aatttctattttctcatataaaaat 97807
to top
>emb|AL929457.12| Zebrafish DNA sequence from clone CH211-153I8 in linkage group 14,
             complete sequence
          Length = 164299

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    atagtctctgttgctccttcc 92
             |||||||||||||||||||||
Sbjct: 28879 atagtctctgttgctccttcc 28859
to top
>emb|CT010565.14| Mouse DNA sequence from clone RP23-263E11 on chromosome 16, complete
              sequence
          Length = 200242

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 220    catttatttgtgttattttccattt 244
              ||||| |||||||||||||||||||
Sbjct: 128634 catttctttgtgttattttccattt 128610
to top
>emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chromosome 2, complete
              sequence
          Length = 221534

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 280    aatttctactttctcatataaaaat 304
              |||||||| ||||||||||||||||
Sbjct: 183371 aatttctattttctcatataaaaat 183347
to top
>gb|AC121842.3| Mus musculus BAC clone RP24-80L24 from chromosome 3, complete sequence
          Length = 173273

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 222    tttatttgtgttattttccatttg 245
              ||||||||| ||||||||||||||
Sbjct: 103402 tttatttgtattattttccatttg 103425
to top
>gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p, complete sequence
          Length = 167559

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 222   tttatttgtgttattttccatttg 245
             ||||||||| ||||||||||||||
Sbjct: 49294 tttatttgttttattttccatttg 49271
to top
>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence
          Length = 147107

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 286   tactttctcatataaaaatacagg 309
             |||||||||||| |||||||||||
Sbjct: 33029 tactttctcataaaaaaatacagg 33006
to top
>gb|AC139728.3| Carollia perspicillata clone 29G20, complete sequence
          Length = 125364

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   atttgtgttattttccattt 244
             ||||||||||||||||||||
Sbjct: 15923 atttgtgttattttccattt 15942
to top
>emb|AL356575.8| Human DNA sequence from clone RP11-340C20 on chromosome 13 Contains
             part of the PCCA gene for propionyl Coenzyme A carboxylase
             alpha polypeptide, and a ribosomal protein L15 (RPL15)
             pseudogene, complete sequence
          Length = 158527

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   tcattcatttatttgtgtta 234
             ||||||||||||||||||||
Sbjct: 23998 tcattcatttatttgtgtta 23979
to top
>emb|AL162574.14| Human DNA sequence from clone RP11-282A11 on chromosome 13 Contains a
              novel gene similar to peptidylprolyl isomerase A
              (cyclophilin A) (PPIA) (CYPA CYPH) and a CpG island,
              complete sequence
          Length = 184738

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    ttcatttatttgtgttattt 237
              ||||||||||||||||||||
Sbjct: 155960 ttcatttatttgtgttattt 155979
to top
>emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in linkage group 12
             Contains part of a novel ring finger gene, a novel zinc
             finger pseudogene, a novel zinc finger gene and a novel
             gene similar to valop (vertebrate ancient long opsin),
             complete sequence
          Length = 165151

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   agcaaacattgctttctaaa 136
             ||||||||||||||||||||
Sbjct: 40392 agcaaacattgctttctaaa 40411
to top
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence
          Length = 142102

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 286    tactttctcatataaaaatacagg 309
              |||||||||||| |||||||||||
Sbjct: 123786 tactttctcataaaaaaatacagg 123763
to top
>emb|BX537135.9| Zebrafish DNA sequence from clone DKEY-57B1 in linkage group 14,
             complete sequence
          Length = 108341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   catttatttgtgttattttc 239
             ||||||||||||||||||||
Sbjct: 73416 catttatttgtgttattttc 73397
to top
>gb|AC115100.3| Homo sapiens chromosome 18, clone RP11-237L15, complete sequence
          Length = 169152

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 215    tcattcatttatttgtgttatttt 238
              ||||| ||||||||||||||||||
Sbjct: 124585 tcatttatttatttgtgttatttt 124562
to top
>gb|AC091317.3| Homo sapiens chromosome 18, clone CTD-2338I4, complete sequence
          Length = 105168

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 215   tcattcatttatttgtgttatttt 238
             ||||| ||||||||||||||||||
Sbjct: 77320 tcatttatttatttgtgttatttt 77343
to top
>gb|AC016909.9| Homo sapiens BAC clone RP11-458A7 from 2, complete sequence
          Length = 155535

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   tcattcatttatttgtgttatttt 238
             ||||| ||||||||||||||||||
Sbjct: 78808 tcattgatttatttgtgttatttt 78785
to top
>emb|BX842670.5| Zebrafish DNA sequence from clone DKEY-195A13 in linkage group 20,
             complete sequence
          Length = 177539

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   atttgtgttattttccattt 244
             ||||||||||||||||||||
Sbjct: 51310 atttgtgttattttccattt 51291
to top
>emb|AL845550.13| Zebrafish DNA sequence from clone CH211-121D13 in linkage group 20,
              complete sequence
          Length = 163676

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     atagtctctgttgctccttc 91
              ||||||||||||||||||||
Sbjct: 110696 atagtctctgttgctccttc 110677
to top
>emb|AL117202.1|CEY47D3A Caenorhabditis elegans YAC Y47D3A, complete sequence
          Length = 199814

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 108    aaagattacagcaaacattgcttt 131
              ||||||| ||||||||||||||||
Sbjct: 158359 aaagatttcagcaaacattgcttt 158382
to top
>gb|AC102249.16| Mus musculus chromosome 19, clone RP24-160D21, complete sequence
          Length = 212190

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    actgatagtctctgttgctc 87
             ||||||||||||||||||||
Sbjct: 99197 actgatagtctctgttgctc 99216
to top
>emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in linkage group 14,
             complete sequence
          Length = 122704

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   agcaaacattgctttctaaa 136
             ||||||||||||||||||||
Sbjct: 69951 agcaaacattgctttctaaa 69970
to top
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    atttgtgttattttccattt 244
              ||||||||||||||||||||
Sbjct: 569265 atttgtgttattttccattt 569284


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,856,174
Number of Sequences: 3902068
Number of extensions: 4856174
Number of successful extensions: 109102
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108982
Number of HSP's gapped (non-prelim): 120
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top