>TAX_HTLV2 (P03410) Protein Tax-2 (Trans-activating transcriptional regulatory|
           protein of HTLV-2)
          Length = 331

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 235 LFVLFQAPCANVAECCIIIVFFFCTTTPFETWTFCSG 125
           +F   +APC   A C  ++ +    TTP   WTF  G
Sbjct: 217 MFQPVRAPCIQTAWCTGLLPYHSILTTPGLIWTFNDG 253

>OP1S2_BRARE (Q9W6A8) Opsin-1, short-wave-sensitive 2 (Blue-sensitive opsin)|
           (Blue cone photoreceptor pigment) (Opsin SWS-2)
          Length = 354

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 196 ECCIIIVFFFCTTTPFETWTFCSGR*I*VMQKTWVGRSSSS*TQ 65
           E  ++ +F FC   PF T  FC G+ +  ++     ++ S+ TQ
Sbjct: 208 ESYVMFLFCFCFAVPFSTIVFCYGQLLITLKLAAKAQADSASTQ 251

>SC6A9_BOVIN (Q28039) Sodium- and chloride-dependent glycine transporter 1|
           (GlyT1) (GlyT-1) (Solute carrier family 6 member 9)
          Length = 638

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 190 CIIIVFFFCTTTPFETWTFCS 128
           CI   +FF + TP   WT+C+
Sbjct: 133 CIAFYYFFSSMTPVLPWTYCN 153

>YJY2_YEAST (P47087) Hypothetical 23.2 kDa protein in SPC1-ILV3 intergenic|
           region
          Length = 207

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 256 LFRWQGFLFVLFQAPCANVAECCIIIVFFFCTTTP 152
           + R   F F+ F   C  +   CI IVFFF    P
Sbjct: 8   ILRQSSFNFITFYLACQLLTFLCIYIVFFFVKFLP 42

>DRD4_MUSPF (Q6TLJ0) D(4) dopamine receptor (Dopamine D4 receptor)|
          Length = 357

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/58 (20%), Positives = 27/58 (46%)
 Frame = -3

Query: 313 ATSAPVFCASCDRKIGKQGLFRWQGFLFVLFQAPCANVAECCIIIVFFFCTTTPFETW 140
           A +APV C   D +     + R +   +V++ + C+    C ++++ ++ T      W
Sbjct: 160 AVAAPVLCGLNDARGRDPAVCRLEDRDYVVYSSVCSFFLPCPVMLLLYWATFRGLRRW 217

>LHX61_MOUSE (Q9R1R0) LIM/homeobox protein Lhx6.1|
          Length = 363

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 277 CRTRHKKQAQMSPFWPAGYALTYLPT 354
           CR RHKK     P  P+G   T LP+
Sbjct: 270 CRARHKKHTPQHPVPPSGAPPTRLPS 295

>OPSB_CARAU (P32310) Blue-sensitive opsin (Blue cone photoreceptor pigment)|
          Length = 351

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 196 ECCIIIVFFFCTTTPFETWTFCSGR*I*VMQKTWVGRSSSS*TQ 65
           E  ++ +F FC   PF T  FC G+ +  ++     ++ S+ TQ
Sbjct: 205 ESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSASTQ 248

>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2319

 Score = 23.1 bits (48), Expect(2) = 7.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 362  QAYVGKYVKA*PAGQNGDIC 303
            + Y+G YV   P G +GD C
Sbjct: 1102 RGYMGGYVCECPTGYSGDSC 1121



 Score = 22.7 bits (47), Expect(2) = 7.9
 Identities = 7/28 (25%), Positives = 11/28 (39%)
 Frame = -3

Query: 214  PCANVAECCIIIVFFFCTTTPFETWTFC 131
            PC N   C  ++  + C+  P      C
Sbjct: 1132 PCQNGGSCIDLVAHYLCSCPPGTLGVLC 1159

>DRD4_HUMAN (P21917) D(4) dopamine receptor (Dopamine D4 receptor) (D(2C)|
           dopamine receptor)
          Length = 467

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = -3

Query: 313 ATSAPVFCASCDRKIGKQGLFRWQGFLFVLFQAPCANVAECCIIIVFFFCTTTPFETW 140
           A +APV C   D +     + R +   +V++ + C+    C ++++ ++ T    + W
Sbjct: 165 AVAAPVLCGLNDVRGRDPAVCRLEDRDYVVYSSVCSFFLPCPLMLLLYWATFRGLQRW 222

>GATE_HALSA (Q9HQ32) Glutamyl-tRNA(Gln) amidotransferase subunit E (EC 6.3.5.-)|
           (Glu-ADT subunit E)
          Length = 622

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
 Frame = +3

Query: 57  NTPCVHEEDDRPTHVFCITYIYLPLQ-----------KVHVSNGVVVQKKKTMMIQHSAT 203
           +T C+ EEDD P H      +   L+           + HV   VV+    T   Q S  
Sbjct: 79  DTTCLVEEDDEPPHRLDEDALAAALEIGHLLGMDAVDRAHVMRKVVIDGSNTGGFQRSTM 138

Query: 204 FAQGA*NRTKRNP 242
            A+G    T   P
Sbjct: 139 VAEGGAIDTSEGP 151

>CXB4_HUMAN (Q9NTQ9) Gap junction beta-4 protein (Connexin-30.3) (Cx30.3)|
          Length = 266

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 162 QQHHLKHGPSVAVDRYRLCKRRGSV 88
           ++HHLKHGP+       L K+RG +
Sbjct: 103 RKHHLKHGPNAPSLYDNLSKKRGGL 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,095,045
Number of Sequences: 219361
Number of extensions: 922478
Number of successful extensions: 2373
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2372
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)