>gb|DQ019632.1| Triticum aestivum nuclear transportin (TRN-SR) mRNA, complete cds
          Length = 3319

 Score =  603 bits (304), Expect = e-169
 Identities = 364/384 (94%)
 Strand = Plus / Minus

                                                                        
Query: 3    atgtgacatcaaggacatacttaatatttggcagatgtttacataaaaagaattggtggc 62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307 atgtgacatcaaggacatacttaatatttggcagatgtttacataaaaagaattggtggc 3248

                                                                        
Query: 63   cacctcaattcacaaagttaggctggccagctattacaaaattcaggaccagggcagatc 122
            |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 3247 cacctcaattcacaaagttaagctggccagccattacaaaattcaggaccagggcagatc 3188

                                                                        
Query: 123  acaatccgcgtgatctcctagttgagtacgtataccactgatctcttccagataataata 182
            |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3187 acaatcggtgtgatctcctagttgagtacgtataccactgatctcttccagataataata 3128

                                                                        
Query: 183  caacacaattttcctcccacatacataaatgcacgacacatgtacagagacaagcacgat 242
            |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| | 
Sbjct: 3127 caacacaactttcctcccacatacataaatgcacgacgcatgtacagagacaaacacaaa 3068

                                                                        
Query: 243  atgaatgacaatgactactggctgacctatctatcctctaaagaaatctgaacaatatga 302
            ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 3067 atgaatgacaatgactactggctgacctatctatcctctaaaagaatctgaacaatatga 3008

                                                                        
Query: 303  tcgatgccgcaactcaaaccgtatgaatgggtaaaaaatccagatggcgcacaccgactc 362
            | ||||||||||||||||||||||||| ||| || | || ||||||||| |||| ||| |
Sbjct: 3007 tggatgccgcaactcaaaccgtatgaaaggggaagatattcagatggcgtacacggacac 2948

                                    
Query: 363  catcacgggctttcaactggtctt 386
            ||||||||||||||||||||||||
Sbjct: 2947 catcacgggctttcaactggtctt 2924



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 61/66 (92%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                        
Query: 397  tccagtcatcatgaatgccgcggagcaagtgtgaaggttaagtcatgaggctgc-aagca 455
            ||||||||||||||||||||||||||||  |||||||  ||||||||||||||| |||||
Sbjct: 2911 tccagtcatcatgaatgccgcggagcaaccgtgaaggccaagtcatgaggctgcaaagca 2852

                  
Query: 456  gcttga 461
            ||||||
Sbjct: 2851 gcttga 2846

>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
             sequence
          Length = 163279

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Plus

                                                                     
Query: 267   acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 322
             ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 14955 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 15006



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 177   ataatacaacacaattttcctcccacataca 207
             |||||||||||||| |||||||||| |||||
Sbjct: 14864 ataatacaacacaactttcctcccagataca 14894

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 177      ataatacaacacaattttcctcccacataca 207
                |||||||||||||| |||||||||| |||||
Sbjct: 17357415 ataatacaacacaactttcctcccagataca 17357385



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Minus

                                                                        
Query: 267      acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 322
                ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 17357324 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 17357273

>dbj|AK102336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091A14, full
            insert sequence
          Length = 3529

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 177  ataatacaacacaattttcctcccacataca 207
            |||||||||||||| |||||||||| |||||
Sbjct: 3364 ataatacaacacaactttcctcccagataca 3334



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Minus

                                                                    
Query: 267  acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 322
            ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 3273 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 3222

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 177      ataatacaacacaattttcctcccacataca 207
                |||||||||||||| |||||||||| |||||
Sbjct: 17366455 ataatacaacacaactttcctcccagataca 17366425



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Minus

                                                                        
Query: 267      acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 322
                ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 17366364 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 17366313

>gb|AC092704.10| Homo sapiens chromosome 18, clone RP11-687D19, complete sequence
          Length = 185257

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 277    cctctaaagaaatctgaacaat 298
              ||||||||||||||||||||||
Sbjct: 152288 cctctaaagaaatctgaacaat 152267

>gb|AC101883.6| Mus musculus chromosome 1, clone RP23-402F17, complete sequence
          Length = 191721

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 200    cacatacataaatgcacgacacatgtaca 228
              |||||| |||||||||| |||||||||||
Sbjct: 152148 cacatagataaatgcaccacacatgtaca 152120

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 187    acaattttcctcccacatacataaa 211
              ||||||||||||| |||||||||||
Sbjct: 693488 acaattttcctccgacatacataaa 693512

>emb|BX649569.5| Human DNA sequence from clone RP11-204I2 on chromosome 9 Contains part
             of the gene for a novel protein similar to contactin
             associated protein-like 3 (CNTNAP3), complete sequence
          Length = 162657

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   tcctctaaagaaatctgaac 295
             ||||||||||||||||||||
Sbjct: 39964 tcctctaaagaaatctgaac 39945

>emb|AL162233.14| Human DNA sequence from clone RP11-292B8 on chromosome 9 Contains a
              pseudogene similar to part of contactin associated
              protein-like 3 (CNTNAP3), an RNA binding motif protein 17
              (RBM17) pseudogene and a CpG island, complete sequence
          Length = 179833

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    tcctctaaagaaatctgaac 295
              ||||||||||||||||||||
Sbjct: 102456 tcctctaaagaaatctgaac 102475

>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3
             Contains the 3' part of a novel gene, complete sequence
          Length = 88509

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    agatgtttacataaaaagaa 54
             ||||||||||||||||||||
Sbjct: 40339 agatgtttacataaaaagaa 40320

>emb|AL031658.11|HS310O13 Human DNA sequence from clone RP1-310O13 on chromosome 20q11.2 Contains
             the 3' end of the C20orf125 gene, the C20orf126 gene, the
             C20orf159 gene, the C20orf160 gene, a novel gene and four
             CpG islands, complete sequence
          Length = 162976

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    atttggcagatgtttacataaaaa 51
             |||||| |||||||||||||||||
Sbjct: 48630 atttggaagatgtttacataaaaa 48653

>emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid
          Length = 121587

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    agttaggctggccagctatt 97
             ||||||||||||||||||||
Sbjct: 92478 agttaggctggccagctatt 92459

>emb|AL844602.6| Mouse DNA sequence from clone RP24-251H18 on chromosome 4, complete
             sequence
          Length = 116028

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   atctatcctctaaagaaatc 290
             ||||||||||||||||||||
Sbjct: 16666 atctatcctctaaagaaatc 16685

>gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete sequence
          Length = 136333

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 182   acaacacaattttcctcccacata 205
             ||||||||||||| ||||||||||
Sbjct: 54476 acaacacaatttttctcccacata 54453

>gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosome 16, complete
             sequence
          Length = 175409

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   aactcaaaccgtatgaatgggtaa 336
             |||||||||||||| |||||||||
Sbjct: 50932 aactcaaaccgtataaatgggtaa 50955

>gb|AC017078.8| Homo sapiens BAC clone RP11-457N9 from 2, complete sequence
          Length = 193979

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   caacacaattttcctcccac 202
             ||||||||||||||||||||
Sbjct: 78470 caacacaattttcctcccac 78451

>emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chromosome X, complete
              sequence
          Length = 189900

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tacttaatatttggcagatg 39
              ||||||||||||||||||||
Sbjct: 129469 tacttaatatttggcagatg 129488

>emb|BX465225.10| Zebrafish DNA sequence from clone DKEY-29F10 in linkage group 20,
              complete sequence
          Length = 186128

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     ttaatatttggcagatgttt 42
              ||||||||||||||||||||
Sbjct: 114098 ttaatatttggcagatgttt 114117

>gb|AY106889.1| Zea mays PCO108418 mRNA sequence
          Length = 629

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 264 ctgacctatctatcctctaaagaaatctgaac 295
           ||||||||||||| |||| || ||||||||||
Sbjct: 377 ctgacctatctatgctctgaacaaatctgaac 346

>emb|BX537149.1| Mouse DNA sequence from clone RP23-251H18 on chromosome 4, complete
             sequence
          Length = 112029

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   atctatcctctaaagaaatc 290
             ||||||||||||||||||||
Sbjct: 14667 atctatcctctaaagaaatc 14686

>emb|BX005035.9| Human DNA sequence from clone RP11-133G22 on chromosome 9, complete
              sequence
          Length = 146143

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    tcctctaaagaaatctgaac 295
              ||||||||||||||||||||
Sbjct: 106253 tcctctaaagaaatctgaac 106272


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,374,876
Number of Sequences: 3902068
Number of extensions: 4374876
Number of successful extensions: 75941
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75833
Number of HSP's gapped (non-prelim): 108
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)