ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41d01 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1217 Score = 32.3 bits (72), Expect = 0.44 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -3 Query: 412 QKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLWVIGEA 278 +K LS+K+ Y+EK P VQE+D KL +L + EA Sbjct: 1165 EKQIEKLSEKISKGDYKEKVPVKVQEQDTEKLRQSQTELEKVKEA 1209
>SYV_CARHZ (Q3AF87) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 878 Score = 31.2 bits (69), Expect = 0.99 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -3 Query: 394 LSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLWVI 287 L+QK+ G+ KAP V ++ KLTAF+ + V+ Sbjct: 832 LNQKLNNPGFLAKAPAEVVNKEREKLTAFYREKEVL 867
>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1108 Score = 30.0 bits (66), Expect = 2.2 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -3 Query: 412 QKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQ 299 QK + L + M S Y EK P +++E++ KL ++ Sbjct: 1050 QKQKEKLQKMMSVSTYEEKVPANIKEDNANKLAKILQE 1087
>SYV_RAT (Q04462) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1264 Score = 29.3 bits (64), Expect = 3.7 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -3 Query: 412 QKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLWVIGEA 278 Q+ L ++ ASGY K P VQE D KL +L + EA Sbjct: 1212 QRQAQRLQERRAASGYSAKVPLEVQEADEVKLQQTEAELRKVDEA 1256
>SYV_PELCD (Q3A253) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 899 Score = 28.9 bits (63), Expect = 4.9 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = -3 Query: 391 SQKMEASGYREKAPPSVQEEDMRKLTAFFEQLWVIGEAEKKLDA 260 S+K+ + KAP +V E+D +KL E+L ++ + +KL A Sbjct: 854 SKKLSNESFLAKAPAAVLEKDRQKLADAEEKLSILKQGLEKLAA 897
>UBIE_BRUME (Q8YDE4) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE| (EC 2.1.1.-) Length = 269 Score = 28.9 bits (63), Expect = 4.9 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = +2 Query: 296 QLLEKGGELPHVLLLDTGGSLLSVTGRFHLLRQGML 403 +++E G HV +LD GS+L V GR +++G++ Sbjct: 98 RIVEASGRQAHVTILDINGSMLGV-GRERAIKKGLI 132
>SYV_HUMAN (P26640) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1264 Score = 28.9 bits (63), Expect = 4.9 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -3 Query: 412 QKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLWVIGEA 278 Q+ L ++ ASGY K P VQE D KL +L + EA Sbjct: 1212 QRQAQRLRERRAASGYPVKVPLEVQEADEAKLQQTEAELRKVDEA 1256
>CD2AP_HUMAN (Q9Y5K6) CD2-associated protein (Cas ligand with multiple SH3| domains) (Adapter protein CMS) Length = 639 Score = 28.5 bits (62), Expect = 6.4 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = +2 Query: 167 PQKKGAVSTSKQKCQ*VPI---ETESRLKSTARLRI*FLLSLTDDPQLLEKGGELPHVLL 337 P+K + + K Q V I +TE ++K+ R F T++ +L K GE+ H++ Sbjct: 241 PEKPLILQSLGPKTQSVEITKTDTEGKIKAKEYCRTLFAYEGTNEDELTFKEGEIIHLIS 300 Query: 338 LDTG 349 +TG Sbjct: 301 KETG 304
>UBIE_BRUSU (Q8FUZ3) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE| (EC 2.1.1.-) Length = 269 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = +2 Query: 296 QLLEKGGELPHVLLLDTGGSLLSVTGRFHLLRQGML 403 +++E G HV +LD GS+L V GR +++G++ Sbjct: 98 RIVEVSGRQAHVTILDINGSMLGV-GRERAIKKGLI 132
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Frame = +1 Query: 10 PSRPSISHFREVA---FEVDTQHSQINIIYKRKAIV 108 P+ +SH ++ FE+D Q I+I+YK K IV Sbjct: 403 PAMCRVSHLKKFVYDKFEIDAQRFSIDIMYKVKTIV 438
>SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 388 QKMEASGYREKAPPSVQEEDMRKLTAFFEQLWVIGEA 278 +K+ + G+REKAP V E + +L EQ I EA Sbjct: 821 RKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 857
>SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 388 QKMEASGYREKAPPSVQEEDMRKLTAFFEQLWVIGEA 278 +K+ + G+REKAP V E + +L EQ I EA Sbjct: 821 RKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 857
>SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 388 QKMEASGYREKAPPSVQEEDMRKLTAFFEQLWVIGEA 278 +K+ + G+REKAP V E + +L EQ I EA Sbjct: 821 RKLASPGFREKAPKEVVEAEEARLRENLEQAERIREA 857 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,106,591 Number of Sequences: 219361 Number of extensions: 1148759 Number of successful extensions: 3178 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3178 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
