ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41d01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109108.1| Zea mays PCO116815 mRNA sequence Length = 1041 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 264 tctagtttcttctcagcctcaccgatgacccacagttgctcgaaaaaggcggtgagcttc 323 |||| |||||||||||| |||| ||||||| |||||||| || || |||||||||||| Sbjct: 801 tctaatttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttc 742 Query: 324 ctcatgtcctcctcttggacactggggggagccttctc 361 |||||||||||||| || || || | ||||||||||| Sbjct: 741 ctcatgtcctcctcctgtacgctctgtggagccttctc 704
>ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3534 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 315 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 3092 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3033 Query: 375 gcttccatcttctgagacag 394 |||||||| ||||| ||||| Sbjct: 3032 gcttccattttctgtgacag 3013
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 315 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 27542742 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27542683 Query: 375 gcttccatcttctgagacag 394 |||||||| ||||| ||||| Sbjct: 27542682 gcttccattttctgtgacag 27542663 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 351 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 400 |||||||||||| | |||||||| |||||||| ||||| || |||||||| Sbjct: 652074 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652025 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 261 gcatctagtttcttctcagcctcac 285 |||||||||||||||||||| |||| Sbjct: 12395727 gcatctagtttcttctcagcttcac 12395751
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 315 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 20032 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 20091 Query: 375 gcttccatcttctgagacag 394 |||||||| ||||| ||||| Sbjct: 20092 gcttccattttctgtgacag 20111
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 315 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 27634065 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27634006 Query: 375 gcttccatcttctgagacag 394 |||||||| ||||| ||||| Sbjct: 27634005 gcttccattttctgtgacag 27633986 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 351 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 400 |||||||||||| | |||||||| |||||||| ||||| || |||||||| Sbjct: 652072 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652023 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 261 gcatctagtttcttctcagcctcac 285 |||||||||||||||||||| |||| Sbjct: 12392490 gcatctagtttcttctcagcttcac 12392514
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 315 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 7772 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 7831 Query: 375 gcttccatcttctgagacag 394 |||||||| ||||| ||||| Sbjct: 7832 gcttccattttctgtgacag 7851
>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full insert sequence Length = 3587 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 315 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 3304 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3245 Query: 375 gcttccatcttctgagacag 394 |||||||| ||||| ||||| Sbjct: 3244 gcttccattttctgtgacag 3225
>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence Length = 1082 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 264 tctagtttcttctcagcctcaccgatgacccacagttgctcgaaaaaggcggtgagcttc 323 |||| |||||||||||| |||| ||||||| ||||| || || || ||||||||||| Sbjct: 446 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagcttt 505 Query: 324 ctcatgtcctcctc 337 |||||||||||||| Sbjct: 506 ctcatgtcctcctc 519
>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence Length = 1244 Score = 52.0 bits (26), Expect = 0.001 Identities = 80/98 (81%) Strand = Plus / Minus Query: 264 tctagtttcttctcagcctcaccgatgacccacagttgctcgaaaaaggcggtgagcttc 323 |||| |||||||||||| |||| ||||||| ||||| || || || |||| |||||| Sbjct: 953 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagcttt 894 Query: 324 ctcatgtcctcctcttggacactggggggagccttctc 361 |||||||||||||| || || || | ||||||||||| Sbjct: 893 ctcatgtcctcctcctgcacgctctgtggagccttctc 856
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 351 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 400 |||||||||||| | |||||||| |||||||| ||||| || |||||||| Sbjct: 37955 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 37906
>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full insert sequence Length = 4411 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 351 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 400 |||||||||||| | |||||||| |||||||| ||||| || |||||||| Sbjct: 4113 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 4064
>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 32 atttcagagaagttgcttttgaagtgga 59 |||||||||||||| ||||||||||||| Sbjct: 10920 atttcagagaagtttcttttgaagtgga 10893
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 32 atttcagagaagttgcttttgaagtgga 59 |||||||||||||| ||||||||||||| Sbjct: 22274 atttcagagaagtttcttttgaagtgga 22247
>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 186915 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Minus Query: 133 tttgaattttctataaatgtgacatca 159 |||||| |||||||||||||||||||| Sbjct: 132214 tttgaaatttctataaatgtgacatca 132188
>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete sequence Length = 121915 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 catttgaattttctataaatgt 152 |||||||||||||||||||||| Sbjct: 75708 catttgaattttctataaatgt 75687
>ref|XM_509865.1| PREDICTED: Pan troglodytes interferon-stimulated transcription factor 3, gamma 48kDa (LOC452810), mRNA Length = 1504 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 441 cctcaccgatgacacacagttgctc 465
>ref|NM_017999.3| Homo sapiens ring finger protein 31 (RNF31), mRNA Length = 3559 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 2454 cctcaccgatgacacacagttgctc 2478
>gb|BC012077.1| Homo sapiens interferon-stimulated transcription factor 3, gamma 48kDa, mRNA (cDNA clone MGC:19975 IMAGE:4653017), complete cds Length = 3496 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 2422 cctcaccgatgacacacagttgctc 2446
>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence Length = 81567 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 atttgaattttctataaatgt 152 ||||||||||||||||||||| Sbjct: 74176 atttgaattttctataaatgt 74196
>gb|BC009821.2| Homo sapiens ring finger protein 31, mRNA (cDNA clone IMAGE:3948483), partial cds Length = 1926 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 856 cctcaccgatgacacacagttgctc 880
>gb|BC017376.2| Homo sapiens ring finger protein 31, mRNA (cDNA clone IMAGE:3835973), partial cds Length = 1975 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 846 cctcaccgatgacacacagttgctc 870
>gb|AY256461.1| Homo sapiens zinc in-between-ring-finger ubiquitin-associated domain (ZIBRA) mRNA, complete cds Length = 3211 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 2146 cctcaccgatgacacacagttgctc 2170
>gb|AC124558.4| Mus musculus BAC clone RP23-248O8 from chromosome 10, complete sequence Length = 199938 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 ggccaagtataagtcatttcagaga 41 ||||||||| ||||||||||||||| Sbjct: 7822 ggccaagtagaagtcatttcagaga 7846
>emb|AL645564.6| Mouse DNA sequence from clone RP23-35N22 on chromosome 11 Contains part of a novel gene and two CpG islands, complete sequence Length = 205101 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tcatttcagagaagttgcttt 50 ||||||||||||||||||||| Sbjct: 111642 tcatttcagagaagttgcttt 111662
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 261 gcatctagtttcttctcagcctcac 285 |||||||||||||||||||| |||| Sbjct: 54745 gcatctagtttcttctcagcttcac 54769
>dbj|AK122711.1| Homo sapiens cDNA FLJ16199 fis, clone CTONG1000241, highly similar to Mus musculus partial mRNA for muscle protein 534 Length = 2834 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 1787 cctcaccgatgacacacagttgctc 1811
>dbj|AK055542.1| Homo sapiens cDNA FLJ30980 fis, clone HHDPC2000149, highly similar to Mus musculus partial mRNA for muscle protein 534 Length = 2350 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 1299 cctcaccgatgacacacagttgctc 1323
>dbj|AK000973.1| Homo sapiens cDNA FLJ10111 fis, clone HEMBA1002696 Length = 1804 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 778 cctcaccgatgacacacagttgctc 802
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 cactcacagatcaacatcatt 87 ||||||||||||||||||||| Sbjct: 18717892 cactcacagatcaacatcatt 18717872 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 tatcaacttccaaacaaaaat 206 ||||||||||||||||||||| Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822
>gb|AC158687.2| Mus musculus 10 BAC RP24-423N13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 154559 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 ggccaagtataagtcatttcagaga 41 ||||||||| ||||||||||||||| Sbjct: 132926 ggccaagtagaagtcatttcagaga 132950
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 tatcaacttccaaacaaaaat 206 ||||||||||||||||||||| Sbjct: 120044 tatcaacttccaaacaaaaat 120064
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 tatcaacttccaaacaaaaat 206 ||||||||||||||||||||| Sbjct: 26437 tatcaacttccaaacaaaaat 26457
>dbj|AP005492.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0077L03 Length = 171177 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 cactcacagatcaacatcatt 87 ||||||||||||||||||||| Sbjct: 43643 cactcacagatcaacatcatt 43623
>dbj|AK027154.1| Homo sapiens cDNA: FLJ23501 fis, clone LNG02837 Length = 1992 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 895 cctcaccgatgacacacagttgctc 919
>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full insert sequence Length = 3639 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 261 gcatctagtttcttctcagcctcac 285 |||||||||||||||||||| |||| Sbjct: 3519 gcatctagtttcttctcagcttcac 3495
>emb|AL136295.3|CNS01DVZ Human chromosome 14 DNA sequence BAC R-468E2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194815 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 54753 cctcaccgatgacacacagttgctc 54729
>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete sequence Length = 168158 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 aatgtgacatcaccaccatcc 168 ||||||||||||||||||||| Sbjct: 140982 aatgtgacatcaccaccatcc 141002
>dbj|AK074144.1| Homo sapiens mRNA for FLJ00217 protein Length = 4799 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cctcaccgatgacccacagttgctc 304 ||||||||||||| ||||||||||| Sbjct: 678 cctcaccgatgacacacagttgctc 702
>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence Length = 203728 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccatttgaattttctataaa 149 |||||||||||||||||||| Sbjct: 23208 ccatttgaattttctataaa 23189
>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete sequence Length = 156282 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 aacttccaaacaaaaatgcc 209 |||||||||||||||||||| Sbjct: 16747 aacttccaaacaaaaatgcc 16766
>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence Length = 15122 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 aacttccaaacaaaaatgcc 209 |||||||||||||||||||| Sbjct: 3649 aacttccaaacaaaaatgcc 3668
>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the 3' end of the Col27a1 gene for procollagen type XXVII alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1, 2 and 3, an orosomucoid pseudogene, the gene for a novel protein similar to human AT-hook protein AKNA, gene 4933437N03Rik, the Whrn gene for whirlin and two CpG islands, complete sequence Length = 214370 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 gagcttcctcatgtcctcct 336 |||||||||||||||||||| Sbjct: 31754 gagcttcctcatgtcctcct 31735
>emb|BX324134.11| Zebrafish DNA sequence from clone DKEY-103K8 in linkage group 6, complete sequence Length = 219514 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ataagtcatttcagagaagt 44 |||||||||||||||||||| Sbjct: 171568 ataagtcatttcagagaagt 171549
>emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chromosome 4 Contains a ribosomal protein S18 (Rps18) pseudogene, complete sequence Length = 156572 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ttccatcttctgagacaggg 396 |||||||||||||||||||| Sbjct: 31116 ttccatcttctgagacaggg 31135
>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence Length = 55775 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gcttcctcatgtcctcctct 338 |||||||||||||||||||| Sbjct: 23507 gcttcctcatgtcctcctct 23526
>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA (Snap), mRNA Length = 2069 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gaattttctataaatgtgac 155 |||||||||||||||||||| Sbjct: 1762 gaattttctataaatgtgac 1743
>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185918 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gaattttctataaatgtgac 155 |||||||||||||||||||| Sbjct: 106242 gaattttctataaatgtgac 106223
>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence Length = 168521 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 attttctataaatgtgacat 157 |||||||||||||||||||| Sbjct: 1961 attttctataaatgtgacat 1980
>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence Length = 195483 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 aacttccaaacaaaaatgcc 209 |||||||||||||||||||| Sbjct: 160602 aacttccaaacaaaaatgcc 160621
>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence Length = 143516 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgaattttctataaatgtga 154 |||||||||||||||||||| Sbjct: 121095 tgaattttctataaatgtga 121076
>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172507 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 catttgaattttctataaat 150 |||||||||||||||||||| Sbjct: 161099 catttgaattttctataaat 161080
>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence Length = 155354 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 attttctataaatgtgacat 157 |||||||||||||||||||| Sbjct: 23774 attttctataaatgtgacat 23793
>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein 6430402L03 (LOC302412), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cttcctcatgtcctcctctt 339 |||||||||||||||||||| Sbjct: 1005 cttcctcatgtcctcctctt 986
>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA Length = 2054 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gaattttctataaatgtgac 155 |||||||||||||||||||| Sbjct: 1730 gaattttctataaatgtgac 1711
>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175584 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 atgtgacatcaccaccatcc 168 |||||||||||||||||||| Sbjct: 71007 atgtgacatcaccaccatcc 71026
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete sequence Length = 299903 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gaattttctataaatgtgac 155 |||||||||||||||||||| Sbjct: 288396 gaattttctataaatgtgac 288377
>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence Length = 198582 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgaattttctataaatgtga 154 |||||||||||||||||||| Sbjct: 63377 tgaattttctataaatgtga 63358
>gb|AC173477.2| Mus musculus BAC clone RP24-344P5 from chromosome 17, complete sequence Length = 155999 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 gccaagtataagtcatttcagaga 41 |||||||||||| ||||||||||| Sbjct: 122000 gccaagtataagccatttcagaga 122023
>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete cds Length = 2038 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gaattttctataaatgtgac 155 |||||||||||||||||||| Sbjct: 1718 gaattttctataaatgtgac 1699
>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete sequence Length = 216415 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tttgaattttctataaatgt 152 |||||||||||||||||||| Sbjct: 104442 tttgaattttctataaatgt 104461
>emb|AL589870.30| Mouse DNA sequence from clone RP23-118A2 on chromosome 2, complete sequence Length = 202686 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gtggacactcaacactcaca 74 |||||||||||||||||||| Sbjct: 191713 gtggacactcaacactcaca 191732 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,443,063 Number of Sequences: 3902068 Number of extensions: 4443063 Number of successful extensions: 122107 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 121806 Number of HSP's gapped (non-prelim): 301 length of query: 414 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 392 effective length of database: 17,147,199,772 effective search space: 6721702310624 effective search space used: 6721702310624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
