ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY109108.1| Zea mays PCO116815 mRNA sequence 76 1e-10
2ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA 64 4e-07
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 64 4e-07
4gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genom... 64 4e-07
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
6gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genom... 64 4e-07
7dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
8gb|AY112223.1| Zea mays CL3071_1 mRNA sequence 60 6e-06
9gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence 52 0.001
10gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
11dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
12dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragm... 48 0.023
13dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome 48 0.023
14gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Can... 46 0.090
15gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 geno... 44 0.36
16ref|XM_509865.1| PREDICTED: Pan troglodytes interferon-stimulate... 42 1.4
17ref|NM_017999.3| Homo sapiens ring finger protein 31 (RNF31), mRNA 42 1.4
18gb|BC012077.1| Homo sapiens interferon-stimulated transcription ... 42 1.4
19gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2,... 42 1.4
20gb|BC009821.2| Homo sapiens ring finger protein 31, mRNA (cDNA c... 42 1.4
21gb|BC017376.2| Homo sapiens ring finger protein 31, mRNA (cDNA c... 42 1.4
22gb|AY256461.1| Homo sapiens zinc in-between-ring-finger ubiquiti... 42 1.4
23gb|AC124558.4| Mus musculus BAC clone RP23-248O8 from chromosome... 42 1.4
24emb|AL645564.6| Mouse DNA sequence from clone RP23-35N22 on chro... 42 1.4
25gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
26dbj|AK122711.1| Homo sapiens cDNA FLJ16199 fis, clone CTONG10002... 42 1.4
27dbj|AK055542.1| Homo sapiens cDNA FLJ30980 fis, clone HHDPC20001... 42 1.4
28dbj|AK000973.1| Homo sapiens cDNA FLJ10111 fis, clone HEMBA1002696 42 1.4
29dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
30gb|AC158687.2| Mus musculus 10 BAC RP24-423N13 (Roswell Park Can... 42 1.4
31dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
32dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
33dbj|AP005492.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
34dbj|AK027154.1| Homo sapiens cDNA: FLJ23501 fis, clone LNG02837 42 1.4
35dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
36emb|AL136295.3|CNS01DVZ Human chromosome 14 DNA sequence BAC R-4... 42 1.4
37emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on ch... 42 1.4
38dbj|AK074144.1| Homo sapiens mRNA for FLJ00217 protein 42 1.4
39gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, comp... 40 5.5
40gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosom... 40 5.5
41emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, comp... 40 5.5
42emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chro... 40 5.5
43emb|BX324134.11| Zebrafish DNA sequence from clone DKEY-103K8 in... 40 5.5
44emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chr... 40 5.5
45gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, comple... 40 5.5
46ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment ... 40 5.5
47gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswel... 40 5.5
48gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, comp... 40 5.5
49gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosom... 40 5.5
50gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, co... 40 5.5
51gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Canc... 40 5.5
52gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, comp... 40 5.5
53ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothe... 40 5.5
54gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA 40 5.5
55emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-3... 40 5.5
56gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71... 40 5.5
57gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.40... 40 5.5
58gb|AC173477.2| Mus musculus BAC clone RP24-344P5 from chromosome... 40 5.5
59gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachm... 40 5.5
60emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chro... 40 5.5
61emb|AL589870.30| Mouse DNA sequence from clone RP23-118A2 on chr... 40 5.5

>gb|AY109108.1| Zea mays PCO116815 mRNA sequence
          Length = 1041

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                       
Query: 264 tctagtttcttctcagcctcaccgatgacccacagttgctcgaaaaaggcggtgagcttc 323
           |||| |||||||||||| |||| |||||||   |||||||| || || ||||||||||||
Sbjct: 801 tctaatttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttc 742

                                                 
Query: 324 ctcatgtcctcctcttggacactggggggagccttctc 361
           |||||||||||||| || || ||  | |||||||||||
Sbjct: 741 ctcatgtcctcctcctgtacgctctgtggagccttctc 704



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>ref|XM_469360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3534

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 315  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 3092 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3033

                                
Query: 375  gcttccatcttctgagacag 394
            |||||||| ||||| |||||
Sbjct: 3032 gcttccattttctgtgacag 3013



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 315      gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374
                ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 27542742 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27542683

                                    
Query: 375      gcttccatcttctgagacag 394
                |||||||| ||||| |||||
Sbjct: 27542682 gcttccattttctgtgacag 27542663



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 351    ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 400
              |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 652074 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652025



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 261      gcatctagtttcttctcagcctcac 285
                |||||||||||||||||||| ||||
Sbjct: 12395727 gcatctagtttcttctcagcttcac 12395751



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>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                         
Query: 315   gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374
             ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 20032 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 20091

                                 
Query: 375   gcttccatcttctgagacag 394
             |||||||| ||||| |||||
Sbjct: 20092 gcttccattttctgtgacag 20111



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 315      gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374
                ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 27634065 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27634006

                                    
Query: 375      gcttccatcttctgagacag 394
                |||||||| ||||| |||||
Sbjct: 27634005 gcttccattttctgtgacag 27633986



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 351    ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 400
              |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 652072 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652023



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 261      gcatctagtttcttctcagcctcac 285
                |||||||||||||||||||| ||||
Sbjct: 12392490 gcatctagtttcttctcagcttcac 12392514



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>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence,
            complete sequence
          Length = 123406

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                        
Query: 315  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 7772 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 7831

                                
Query: 375  gcttccatcttctgagacag 394
            |||||||| ||||| |||||
Sbjct: 7832 gcttccattttctgtgacag 7851



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>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full
            insert sequence
          Length = 3587

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 315  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 374
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 3304 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3245

                                
Query: 375  gcttccatcttctgagacag 394
            |||||||| ||||| |||||
Sbjct: 3244 gcttccattttctgtgacag 3225



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>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence
          Length = 1082

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 264 tctagtttcttctcagcctcaccgatgacccacagttgctcgaaaaaggcggtgagcttc 323
           |||| |||||||||||| |||| |||||||   ||||| || || || ||||||||||| 
Sbjct: 446 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagcttt 505

                         
Query: 324 ctcatgtcctcctc 337
           ||||||||||||||
Sbjct: 506 ctcatgtcctcctc 519



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>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence
          Length = 1244

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                       
Query: 264 tctagtttcttctcagcctcaccgatgacccacagttgctcgaaaaaggcggtgagcttc 323
           |||| |||||||||||| |||| |||||||   ||||| || || || |||| |||||| 
Sbjct: 953 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagcttt 894

                                                 
Query: 324 ctcatgtcctcctcttggacactggggggagccttctc 361
           |||||||||||||| || || ||  | |||||||||||
Sbjct: 893 ctcatgtcctcctcctgcacgctctgtggagccttctc 856



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>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 351   ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 400
             |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 37955 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 37906



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>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full
            insert sequence
          Length = 4411

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 351  ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 400
            |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 4113 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 4064



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>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA
             polymerase subunit (rpo) genes
          Length = 21245

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 32    atttcagagaagttgcttttgaagtgga 59
             |||||||||||||| |||||||||||||
Sbjct: 10920 atttcagagaagtttcttttgaagtgga 10893



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>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome
          Length = 134545

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 32    atttcagagaagttgcttttgaagtgga 59
             |||||||||||||| |||||||||||||
Sbjct: 22274 atttcagagaagtttcttttgaagtgga 22247



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>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186915

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 133    tttgaattttctataaatgtgacatca 159
              |||||| ||||||||||||||||||||
Sbjct: 132214 tttgaaatttctataaatgtgacatca 132188



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>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 131   catttgaattttctataaatgt 152
             ||||||||||||||||||||||
Sbjct: 75708 catttgaattttctataaatgt 75687



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>ref|XM_509865.1| PREDICTED: Pan troglodytes interferon-stimulated transcription
           factor 3, gamma 48kDa (LOC452810), mRNA
          Length = 1504

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 280 cctcaccgatgacccacagttgctc 304
           ||||||||||||| |||||||||||
Sbjct: 441 cctcaccgatgacacacagttgctc 465



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>ref|NM_017999.3| Homo sapiens ring finger protein 31 (RNF31), mRNA
          Length = 3559

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 280  cctcaccgatgacccacagttgctc 304
            ||||||||||||| |||||||||||
Sbjct: 2454 cctcaccgatgacacacagttgctc 2478



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>gb|BC012077.1| Homo sapiens interferon-stimulated transcription factor 3, gamma
            48kDa, mRNA (cDNA clone MGC:19975 IMAGE:4653017),
            complete cds
          Length = 3496

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 280  cctcaccgatgacccacagttgctc 304
            ||||||||||||| |||||||||||
Sbjct: 2422 cctcaccgatgacacacagttgctc 2446



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>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 132   atttgaattttctataaatgt 152
             |||||||||||||||||||||
Sbjct: 74176 atttgaattttctataaatgt 74196



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>gb|BC009821.2| Homo sapiens ring finger protein 31, mRNA (cDNA clone
           IMAGE:3948483), partial cds
          Length = 1926

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 280 cctcaccgatgacccacagttgctc 304
           ||||||||||||| |||||||||||
Sbjct: 856 cctcaccgatgacacacagttgctc 880



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>gb|BC017376.2| Homo sapiens ring finger protein 31, mRNA (cDNA clone
           IMAGE:3835973), partial cds
          Length = 1975

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 280 cctcaccgatgacccacagttgctc 304
           ||||||||||||| |||||||||||
Sbjct: 846 cctcaccgatgacacacagttgctc 870



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>gb|AY256461.1| Homo sapiens zinc in-between-ring-finger ubiquitin-associated domain
            (ZIBRA) mRNA, complete cds
          Length = 3211

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 280  cctcaccgatgacccacagttgctc 304
            ||||||||||||| |||||||||||
Sbjct: 2146 cctcaccgatgacacacagttgctc 2170



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>gb|AC124558.4| Mus musculus BAC clone RP23-248O8 from chromosome 10, complete
            sequence
          Length = 199938

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 17   ggccaagtataagtcatttcagaga 41
            ||||||||| |||||||||||||||
Sbjct: 7822 ggccaagtagaagtcatttcagaga 7846



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>emb|AL645564.6| Mouse DNA sequence from clone RP23-35N22 on chromosome 11 Contains part
              of a novel gene and two CpG islands, complete sequence
          Length = 205101

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     tcatttcagagaagttgcttt 50
              |||||||||||||||||||||
Sbjct: 111642 tcatttcagagaagttgcttt 111662



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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 261   gcatctagtttcttctcagcctcac 285
             |||||||||||||||||||| ||||
Sbjct: 54745 gcatctagtttcttctcagcttcac 54769



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>dbj|AK122711.1| Homo sapiens cDNA FLJ16199 fis, clone CTONG1000241, highly  similar
            to Mus musculus partial mRNA for muscle protein 534
          Length = 2834

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 280  cctcaccgatgacccacagttgctc 304
            ||||||||||||| |||||||||||
Sbjct: 1787 cctcaccgatgacacacagttgctc 1811



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>dbj|AK055542.1| Homo sapiens cDNA FLJ30980 fis, clone HHDPC2000149, highly similar to
            Mus musculus partial mRNA for muscle protein 534
          Length = 2350

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 280  cctcaccgatgacccacagttgctc 304
            ||||||||||||| |||||||||||
Sbjct: 1299 cctcaccgatgacacacagttgctc 1323



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>dbj|AK000973.1| Homo sapiens cDNA FLJ10111 fis, clone HEMBA1002696
          Length = 1804

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 280 cctcaccgatgacccacagttgctc 304
           ||||||||||||| |||||||||||
Sbjct: 778 cctcaccgatgacacacagttgctc 802



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 67       cactcacagatcaacatcatt 87
                |||||||||||||||||||||
Sbjct: 18717892 cactcacagatcaacatcatt 18717872



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 186     tatcaacttccaaacaaaaat 206
               |||||||||||||||||||||
Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822



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>gb|AC158687.2| Mus musculus 10 BAC RP24-423N13 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 154559

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 17     ggccaagtataagtcatttcagaga 41
              ||||||||| |||||||||||||||
Sbjct: 132926 ggccaagtagaagtcatttcagaga 132950



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>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 186    tatcaacttccaaacaaaaat 206
              |||||||||||||||||||||
Sbjct: 120044 tatcaacttccaaacaaaaat 120064



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>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 186   tatcaacttccaaacaaaaat 206
             |||||||||||||||||||||
Sbjct: 26437 tatcaacttccaaacaaaaat 26457



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>dbj|AP005492.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0077L03
          Length = 171177

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    cactcacagatcaacatcatt 87
             |||||||||||||||||||||
Sbjct: 43643 cactcacagatcaacatcatt 43623



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>dbj|AK027154.1| Homo sapiens cDNA: FLJ23501 fis, clone LNG02837
          Length = 1992

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 280 cctcaccgatgacccacagttgctc 304
           ||||||||||||| |||||||||||
Sbjct: 895 cctcaccgatgacacacagttgctc 919



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>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full
            insert sequence
          Length = 3639

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 261  gcatctagtttcttctcagcctcac 285
            |||||||||||||||||||| ||||
Sbjct: 3519 gcatctagtttcttctcagcttcac 3495



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>emb|AL136295.3|CNS01DVZ Human chromosome 14 DNA sequence BAC R-468E2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 194815

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 280   cctcaccgatgacccacagttgctc 304
             ||||||||||||| |||||||||||
Sbjct: 54753 cctcaccgatgacacacagttgctc 54729



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>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete
              sequence
          Length = 168158

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 148    aatgtgacatcaccaccatcc 168
              |||||||||||||||||||||
Sbjct: 140982 aatgtgacatcaccaccatcc 141002



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>dbj|AK074144.1| Homo sapiens mRNA for FLJ00217 protein
          Length = 4799

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 280 cctcaccgatgacccacagttgctc 304
           ||||||||||||| |||||||||||
Sbjct: 678 cctcaccgatgacacacagttgctc 702



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>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   ccatttgaattttctataaa 149
             ||||||||||||||||||||
Sbjct: 23208 ccatttgaattttctataaa 23189



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>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete
             sequence
          Length = 156282

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   aacttccaaacaaaaatgcc 209
             ||||||||||||||||||||
Sbjct: 16747 aacttccaaacaaaaatgcc 16766



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>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence
          Length = 15122

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 190  aacttccaaacaaaaatgcc 209
            ||||||||||||||||||||
Sbjct: 3649 aacttccaaacaaaaatgcc 3668



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>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the
             3' end of the Col27a1 gene for procollagen type XXVII
             alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1,
             2 and 3, an orosomucoid pseudogene, the gene for a novel
             protein similar to human AT-hook protein AKNA, gene
             4933437N03Rik, the Whrn gene for whirlin and two CpG
             islands, complete sequence
          Length = 214370

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   gagcttcctcatgtcctcct 336
             ||||||||||||||||||||
Sbjct: 31754 gagcttcctcatgtcctcct 31735



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>emb|BX324134.11| Zebrafish DNA sequence from clone DKEY-103K8 in linkage group 6, complete
              sequence
          Length = 219514

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     ataagtcatttcagagaagt 44
              ||||||||||||||||||||
Sbjct: 171568 ataagtcatttcagagaagt 171549



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>emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chromosome 4 Contains a
             ribosomal protein S18 (Rps18) pseudogene, complete
             sequence
          Length = 156572

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   ttccatcttctgagacaggg 396
             ||||||||||||||||||||
Sbjct: 31116 ttccatcttctgagacaggg 31135



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>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence
          Length = 55775

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   gcttcctcatgtcctcctct 338
             ||||||||||||||||||||
Sbjct: 23507 gcttcctcatgtcctcctct 23526



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>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA
            (Snap), mRNA
          Length = 2069

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 136  gaattttctataaatgtgac 155
            ||||||||||||||||||||
Sbjct: 1762 gaattttctataaatgtgac 1743



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>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185918

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    gaattttctataaatgtgac 155
              ||||||||||||||||||||
Sbjct: 106242 gaattttctataaatgtgac 106223



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>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence
          Length = 168521

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  attttctataaatgtgacat 157
            ||||||||||||||||||||
Sbjct: 1961 attttctataaatgtgacat 1980



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>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence
          Length = 195483

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    aacttccaaacaaaaatgcc 209
              ||||||||||||||||||||
Sbjct: 160602 aacttccaaacaaaaatgcc 160621



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>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence
          Length = 143516

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    tgaattttctataaatgtga 154
              ||||||||||||||||||||
Sbjct: 121095 tgaattttctataaatgtga 121076



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>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172507

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    catttgaattttctataaat 150
              ||||||||||||||||||||
Sbjct: 161099 catttgaattttctataaat 161080



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>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence
          Length = 155354

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   attttctataaatgtgacat 157
             ||||||||||||||||||||
Sbjct: 23774 attttctataaatgtgacat 23793



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>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
            6430402L03 (LOC302412), mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 320  cttcctcatgtcctcctctt 339
            ||||||||||||||||||||
Sbjct: 1005 cttcctcatgtcctcctctt 986



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>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 136  gaattttctataaatgtgac 155
            ||||||||||||||||||||
Sbjct: 1730 gaattttctataaatgtgac 1711



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>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175584

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   atgtgacatcaccaccatcc 168
             ||||||||||||||||||||
Sbjct: 71007 atgtgacatcaccaccatcc 71026



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>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete
              sequence
          Length = 299903

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    gaattttctataaatgtgac 155
              ||||||||||||||||||||
Sbjct: 288396 gaattttctataaatgtgac 288377



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>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence
          Length = 198582

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   tgaattttctataaatgtga 154
             ||||||||||||||||||||
Sbjct: 63377 tgaattttctataaatgtga 63358



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>gb|AC173477.2| Mus musculus BAC clone RP24-344P5 from chromosome 17, complete sequence
          Length = 155999

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 18     gccaagtataagtcatttcagaga 41
              |||||||||||| |||||||||||
Sbjct: 122000 gccaagtataagccatttcagaga 122023



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>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete
            cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 136  gaattttctataaatgtgac 155
            ||||||||||||||||||||
Sbjct: 1718 gaattttctataaatgtgac 1699



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>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete
              sequence
          Length = 216415

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    tttgaattttctataaatgt 152
              ||||||||||||||||||||
Sbjct: 104442 tttgaattttctataaatgt 104461



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>emb|AL589870.30| Mouse DNA sequence from clone RP23-118A2 on chromosome 2, complete
              sequence
          Length = 202686

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     gtggacactcaacactcaca 74
              ||||||||||||||||||||
Sbjct: 191713 gtggacactcaacactcaca 191732


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,443,063
Number of Sequences: 3902068
Number of extensions: 4443063
Number of successful extensions: 122107
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121806
Number of HSP's gapped (non-prelim): 301
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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