>V119_ASFL5 (P26703) LIS 119-1 protein precursor|
          Length = 119

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 169 NYVHTLSVQRKYVNCSFFLEPPSPYKLFHCFNSPIM 276
           +Y+   S+ R +  C +F++P SPY  +   + PI+
Sbjct: 78  DYISQCSIARYFDRCMYFIKPKSPYIHYMDCSQPIV 113

>HFE_PANTR (P60018) Hereditary hemochromatosis protein homolog precursor|
           (HLA-H)
          Length = 348

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 189 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRR 302
           C  ++ QLL L R     Q+ PL+++TH+ T S  T R
Sbjct: 187 CPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLR 224

>HFE_HUMAN (Q30201) Hereditary hemochromatosis protein precursor (HLA-H)|
          Length = 348

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 189 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRR 302
           C  ++ QLL L R     Q+ PL+++TH+ T S  T R
Sbjct: 187 CPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLR 224

>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A|
           (Transcription termination factor I-interacting protein
           5) (TTF-I-interacting protein 5) (Tip5) (hWALp3)
          Length = 1878

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +2

Query: 182 HLVFRGSMSTAPSSSSRLHHTNYSIASTHPLWNL*QQNSPPPGS 313
           H    G +++AP SSS  H  + S+A    LWN  Q  S  PGS
Sbjct: 66  HTTTSGILNSAPHSSSTSHLHHPSVAYDC-LWNYSQYPSANPGS 108

>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast precursor|
          Length = 1385

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 231  RLEEEGAVDILPLNTKCMNIIWKVE*MANNYEKIGRLLCQNT*KDSLSP 85
            RL  E A+D  PLNTK +N+  + E    +Y +   L  +    D LSP
Sbjct: 1039 RLLFERALDAHPLNTKIINMYARFEAEEGSYREAAELYDRALQIDPLSP 1087

>VP3_BTV2A (Q65748) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429

>VP3_BTV1S (P56582) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429

>VP3_BTV1A (P20608) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429

>VP3_BTV17 (P03539) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429

>VP3_BTV11 (Q65749) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429

>VP3_BTV10 (P12435) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429

>TRPB1_ARATH (P14671) Tryptophan synthase beta chain 1, chloroplast precursor|
           (EC 4.2.1.20)
          Length = 470

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 191 FRGSMSTAPSSSSRLHH 241
           FR S+S+APSSSS+L H
Sbjct: 10  FRASVSSAPSSSSQLTH 26


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,389,993
Number of Sequences: 219361
Number of extensions: 849459
Number of successful extensions: 1892
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)