>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
           protein)
          Length = 894

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -3

Query: 380 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 258
           L+A L EMGF DR+ N +LL K+  +I + V +L+     D
Sbjct: 848 LMAHLFEMGFCDRQLNLQLLKKHNYNILQVVTELLQLNNND 888

>DSK2_SCHPO (Q10169) Deubiquitination-protection protein dph1|
          Length = 354

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 14/35 (40%), Positives = 26/35 (74%)
 Frame = -3

Query: 377 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 273
           L++L+EMGF D E N + L ++GG+++ A+  L++
Sbjct: 318 LSQLNEMGFVDFERNVQALRRSGGNVQGAIESLLS 352

>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein)
          Length = 983

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -3

Query: 380  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 258
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 937  LMAHLFEMGFCDRQLNLRLLRKHNHNILQVVTELLQVNNND 977

>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2) (1A1-3B)
          Length = 966

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -3

Query: 380  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 258
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 920  LMARLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND 960

>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -3

Query: 428 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 273
           ++Q +  L GVN         +   L +LS MGF +RE N + L   GG I  A+  L+ 
Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 578

Query: 272 RE 267
            +
Sbjct: 579 SQ 580

>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -3

Query: 428 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 273
           ++Q +  L GVN         +   L +LS MGF +RE N + L   GG I  A+  L+ 
Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 578

Query: 272 RE 267
            +
Sbjct: 579 SQ 580

>UBQL1_HUMAN (Q9UMX0) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1) (hPLIC-1)
          Length = 589

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -3

Query: 428 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 273
           ++Q +  L GVN         +   L +LS MGF +RE N + L   GG I  A+  L+ 
Sbjct: 526 IQQMLQALAGVNPQLQNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 585

Query: 272 RE 267
            +
Sbjct: 586 SQ 587

>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2)
          Length = 988

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -3

Query: 380  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 258
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 942  LMAHLFEMGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982

>UBQL2_HUMAN (Q9UHD9) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)|
           (PLIC-2) (hPLIC-2) (Ubiquitin-like product Chap1/Dsk2)
           (DSK2 homolog) (Chap1)
          Length = 624

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = -3

Query: 440 NKYNLEQSVDDLCGVN---------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 288
           N+  ++Q V  L G N          +   L +L+ MGF +RE N + L   GG I  A+
Sbjct: 556 NQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAI 615

Query: 287 MDLIARE 267
             L+  +
Sbjct: 616 ERLLGSQ 622

>UBL7_MOUSE (Q91W67) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)|
          Length = 380

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 395 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 288
           ++W P L +L +MG  D E +   L   GG I+ A+
Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAAL 371

>UBL7_HUMAN (Q96S82) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)|
           (Bone marrow stromal cell ubiquitin-like protein)
           (BMSC-UbP)
          Length = 380

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 395 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 288
           ++W P L +L +MG  D E +   L   GG I+ A+
Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAAL 371

>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 55  EQLSRLQQPHAADPPRSQHNKVHTAHRSHT 144
           +Q S+LQ PH+  PP  QH + H  H+  T
Sbjct: 406 QQHSQLQPPHSQHPPPHQHIQHHPNHQHQT 435

>GTS1_YEAST (P40956) Protein GTS1 (Protein LSR1)|
          Length = 396

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 377 LAELSEMGFDDRETNKELLAKNGGSIKRAV 288
           LAEL +MGF D   N + L+   G+I RA+
Sbjct: 199 LAELKDMGFGDTNKNLDALSSAHGNINRAI 228

>UN13B_HUMAN (O14795) Unc-13 homolog B (Munc13-2) (munc13)|
          Length = 1591

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 49  GTEQLSRLQQPHAADPPRSQHNKVHTAHRSHT 144
           G+ QLS L Q H  D    + + +H+ H SH+
Sbjct: 270 GSSQLSELDQYHEQDDDHRETDSIHSCHSSHS 301

>UBQL4_MOUSE (Q99NB8) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 596

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 377 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 267
           L +L+ MGF +RE N + L   GG I  A+  L+  +
Sbjct: 558 LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 594

>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 377 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 267
           L +L+ MGF +RE N + L   GG I  A+  L+  +
Sbjct: 563 LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 599

>UBQL2_MOUSE (Q9QZM0) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)|
           (PLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
           homolog) (Chap1)
          Length = 638

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 377 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 267
           L +L+ MGF +RE N + L   GG I  A+  L+  +
Sbjct: 600 LEQLNAMGFLNREANLQALIATGGDINAAIERLLGSQ 636

>UBIB_PSESM (Q87UZ0) Probable ubiquinone biosynthesis protein ubiB|
          Length = 539

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 61  LSRLQQPHAADPPRSQHNK 117
           L R+ +PHA+DPPR  H++
Sbjct: 468 LERMSRPHASDPPRPWHDR 486

>SIN1_SCHPO (Q9P7Y9) Stress-activated map kinase-interacting protein 1|
           (SAPK-interacting protein 1)
          Length = 665

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +1

Query: 64  SRLQQPHAADPPRSQH--------NKVHTAHRSHTNKSSQQFIGKLRDTLS 192
           +++++  AA P +S+H        NK H  H S T+  SQ+    ++DTL+
Sbjct: 386 AQIKENQAAYPFKSKHPTSIPEANNKTHIRHTSSTSSQSQKQAQDVKDTLN 436

>DSK2_YEAST (P48510) Ubiquitin domain-containing protein DSK2|
          Length = 373

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 377 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLI 276
           L +L++MGF D + N   L ++GGS++ A+  L+
Sbjct: 336 LRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 369

>SAHH_YEAST (P39954) Adenosylhomocysteinase (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
          Length = 449

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +3

Query: 240 SSRSSLVLLLPGDEVH------HSSFDASSILGKQLLVRLPVIKSHFAQFRQQRVPFIDT 401
           SS   ++LL  G  V+      HSSF  S     Q+L ++ + KS+   FR++ + F  T
Sbjct: 334 SSGRHVILLANGRLVNLGCATGHSSFVMSCSFSNQVLAQIALFKSNDKSFREKHIEFQKT 393

>Y3539_METJA (Q60294) Hypothetical UPF0252 protein MJECL39|
          Length = 351

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
 Frame = -1

Query: 244 ELSNTYLSISIYICLNNE-TVCPVVCL*TAVKTCWCD--FCVR-------CELYYVVTVV 95
           E SN Y  I+ +I +     + P V L       WC+  FC+        C LY+++T++
Sbjct: 51  EKSNVYYFITFFIIVGLVWAIFPEVWL-------WCEQVFCISPTIHIIICCLYFIITII 103

Query: 94  GQLRVVAVIG----LVALFLLFNYCEWK 23
             L +  V+G    L A F   + C+ K
Sbjct: 104 LFLFLCGVVGTFLHLWATFFTLSKCDSK 131

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
 Frame = +1

Query: 55  EQLSRLQQPHAADPPRSQ--HNKVHTAHRSHTNKSSQQFIGKL-----RDTLSRYLGIY 210
           + +S+ QQP +  PP+ Q    K   +    + +S + FIG L      D L  Y G Y
Sbjct: 124 QTMSQFQQPSSQSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKY 182

>MURD_CHRVO (Q7NPZ7) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 453

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 267 LPGDEVHHSSFDASSILGKQLLV---RLPVIKSHFAQFRQQRVPFIDTTQIIHRLLQ 428
           LPG EV   +FD ++  G +LLV    +P+     A FR+     +   +I+ R +Q
Sbjct: 50  LPGVEVMVGAFDDATFAGAELLVVSPGVPLANPAIAAFRRAGGEVVGDIEILARAIQ 106

>KNOX3_MAIZE (P56661) Homeobox protein knotted-1-like 3 (Fragment)|
          Length = 88

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 350 DDRETNKELLAKNGGSIKRAVMDLIAREKKDK 255
           DD+E  K+LL K  G +     +L  + KKDK
Sbjct: 1   DDKELKKQLLRKYSGCLGNLRKELCKKRKKDK 32


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,662,774
Number of Sequences: 219361
Number of extensions: 1199375
Number of successful extensions: 3527
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3525
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)