Clone Name | rbastl41c09 |
---|---|
Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 577 bits (291), Expect = e-161 Identities = 291/291 (100%) Strand = Plus / Minus Query: 153 cgtccgtgggatcaccgtccgacggcctgagcagcacatacggcaccatgccggcgccgt 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2854 cgtccgtgggatcaccgtccgacggcctgagcagcacatacggcaccatgccggcgccgt 2795 Query: 213 gtcggtttttccggtcggggtcgttgttccactcatccacctgctccacgatcttcctgg 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2794 gtcggtttttccggtcggggtcgttgttccactcatccacctgctccacgatcttcctgg 2735 Query: 273 tgctctccttgaactcctcaaatgcctggttgatcaccccatcctttgtccatgccggct 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2734 tgctctccttgaactcctcaaatgcctggttgatcaccccatcctttgtccatgccggct 2675 Query: 333 cttcgtgcgtgcccatgtactcctcatccgacgagtgcgtggacaagaggtccaagatgg 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2674 cttcgtgcgtgcccatgtactcctcatccgacgagtgcgtggacaagaggtccaagatgg 2615 Query: 393 caaggactatggcactctggtactgggacgggaacgtgtccagcagcacct 443 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2614 caaggactatggcactctggtactgggacgggaacgtgtccagcagcacct 2564 Score = 165 bits (83), Expect = 2e-37 Identities = 83/83 (100%) Strand = Plus / Minus Query: 1 aattataatttggtgctcattcccattatacccaccgccgggccaagagactgaagacac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3021 aattataatttggtgctcattcccattatacccaccgccgggccaagagactgaagacac 2962 Query: 61 tcttatttacgcctagttgagtt 83 ||||||||||||||||||||||| Sbjct: 2961 tcttatttacgcctagttgagtt 2939 Score = 141 bits (71), Expect = 2e-30 Identities = 74/75 (98%) Strand = Plus / Minus Query: 99 aggcagctcaaatggagctgctgttggggatgcccatctccatcaccatcttctcgtccg 158 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2923 aggcagctcaaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccg 2864 Query: 159 tgggatcaccgtccg 173 ||||||||||||||| Sbjct: 2863 tgggatcaccgtccg 2849
>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene) Length = 3023 Score = 103 bits (52), Expect = 5e-19 Identities = 211/264 (79%) Strand = Plus / Minus Query: 108 aaatggagctgctgttggggatgcccatctccatcaccatcttctcgtccgtgggatcac 167 ||||||| ||||||| || |||||||||||||||||| | || ||||| | |||| || Sbjct: 2892 aaatggaaatgctgttcggaatgcccatctccatcaccgttttagcgtccatcggattac 2833 Query: 168 cgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtttttccggt 227 ||| | | |||||||||||||| |||||||| | |||||| ||||| |||||| ||||| Sbjct: 2832 cgttcaatggcctgagcagcacgtacggcactacgccggcaccgtggcggtttctccggc 2773 Query: 228 cggggtcgttgttccactcatccacctgctccacgatcttcctggtgctctccttgaact 287 | ||| ||||||||||| || ||||||||| |||| | || | ||| || ||| Sbjct: 2772 tgtcgtccttgttccactcttcgacctgctccgcgatgtctctcatcttcttctggaaaa 2713 Query: 288 cctcaaatgcctggttgatcaccccatcctttgtccatgccggctcttcgtgcgtgccca 347 ||| ||| |||| || || | |||||||| || ||| |||||||| | ||||||||||| Sbjct: 2712 cctgaaacgccttgtcgacctccccatccctttgccaagccggctcctggtgcgtgccca 2653 Query: 348 tgtactcctcatccgacgagtgcg 371 |||||||||| ||||||| ||||| Sbjct: 2652 tgtactcctcgtccgacgcgtgcg 2629
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 103 agctcaaatggagctgctgttggggatgcccatctccatcacc 145 ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 22970463 agctcaaatggagatgctgttggggatgcccatctccatcacc 22970421 Score = 69.9 bits (35), Expect = 7e-09 Identities = 95/115 (82%) Strand = Plus / Plus Query: 105 ctcaaatggagctgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 164 ||||||| ||| ||||||||||||| |||||||||||||| | || |||| | || | Sbjct: 22888635 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 22888694 Query: 165 caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 219 |||||| |||||| |||||||||| |||||||||| ||||| ||| || ||||| Sbjct: 22888695 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 22888749 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 408 tctggtactgggacgggaacgtgtccagca 437 |||||||||| ||||||||||||||||||| Sbjct: 22970158 tctggtactgcgacgggaacgtgtccagca 22970129 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 gtgcgtgcccatgtactcctc 357 ||||||||||||||||||||| Sbjct: 22970229 gtgcgtgcccatgtactcctc 22970209 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tgcgtgcccatgtactcctc 357 |||||||||||||||||||| Sbjct: 22888868 tgcgtgcccatgtactcctc 22888887
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 103 agctcaaatggagctgctgttggggatgcccatctccatcacc 145 ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 22898654 agctcaaatggagatgctgttggggatgcccatctccatcacc 22898612 Score = 69.9 bits (35), Expect = 7e-09 Identities = 95/115 (82%) Strand = Plus / Plus Query: 105 ctcaaatggagctgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 164 ||||||| ||| ||||||||||||| |||||||||||||| | || |||| | || | Sbjct: 22816826 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 22816885 Query: 165 caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 219 |||||| |||||| |||||||||| |||||||||| ||||| ||| || ||||| Sbjct: 22816886 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 22816940 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 408 tctggtactgggacgggaacgtgtccagca 437 |||||||||| ||||||||||||||||||| Sbjct: 22898349 tctggtactgcgacgggaacgtgtccagca 22898320 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 gtgcgtgcccatgtactcctc 357 ||||||||||||||||||||| Sbjct: 22898420 gtgcgtgcccatgtactcctc 22898400 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tgcgtgcccatgtactcctc 357 |||||||||||||||||||| Sbjct: 22817059 tgcgtgcccatgtactcctc 22817078
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 103 agctcaaatggagctgctgttggggatgcccatctccatcacc 145 ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 79740 agctcaaatggagatgctgttggggatgcccatctccatcacc 79698 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 408 tctggtactgggacgggaacgtgtccagca 437 |||||||||| ||||||||||||||||||| Sbjct: 79435 tctggtactgcgacgggaacgtgtccagca 79406 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 gtgcgtgcccatgtactcctc 357 ||||||||||||||||||||| Sbjct: 79506 gtgcgtgcccatgtactcctc 79486
>emb|AJ270938.1|OSA270938 Oryza sativa mRNA for lipoxygenase (rci-1 gene) Length = 3018 Score = 69.9 bits (35), Expect = 7e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 164 ||||||| ||| ||||||||||||| |||||||||||||| | || |||| | || | Sbjct: 2817 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 2758 Query: 165 caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 219 |||||| |||||| |||||||||| |||||||||| ||||| ||| || ||||| Sbjct: 2757 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 2703 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 tgcgtgcccatgtactcctc 357 |||||||||||||||||||| Sbjct: 2584 tgcgtgcccatgtactcctc 2565
>dbj|AK072241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002P20, full insert sequence Length = 3080 Score = 69.9 bits (35), Expect = 7e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 164 ||||||| ||| ||||||||||||| |||||||||||||| | || |||| | || | Sbjct: 2836 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 2777 Query: 165 caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 219 |||||| |||||| |||||||||| |||||||||| ||||| ||| || ||||| Sbjct: 2776 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 2722 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 tgcgtgcccatgtactcctc 357 |||||||||||||||||||| Sbjct: 2603 tgcgtgcccatgtactcctc 2584
>dbj|AK066737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079G10, full insert sequence Length = 2747 Score = 69.9 bits (35), Expect = 7e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 164 ||||||| ||| ||||||||||||| |||||||||||||| | || |||| | || | Sbjct: 2343 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 2284 Query: 165 caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 219 |||||| |||||| |||||||||| |||||||||| ||||| ||| || ||||| Sbjct: 2283 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 2229 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 tgcgtgcccatgtactcctc 357 |||||||||||||||||||| Sbjct: 2110 tgcgtgcccatgtactcctc 2091
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 69.9 bits (35), Expect = 7e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 164 ||||||| ||| ||||||||||||| |||||||||||||| | || |||| | || | Sbjct: 68209 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 68150 Query: 165 caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 219 |||||| |||||| |||||||||| |||||||||| ||||| ||| || ||||| Sbjct: 68149 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 68095 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 tgcgtgcccatgtactcctc 357 |||||||||||||||||||| Sbjct: 67976 tgcgtgcccatgtactcctc 67957
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccat 135 |||| |||||| ||||||||||||||||||| Sbjct: 2447 ctcagatggagatgctgttggggatgcccat 2417
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccat 135 |||| |||||| ||||||||||||||||||| Sbjct: 2926 ctcagatggagatgctgttggggatgcccat 2896
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccat 135 |||| |||||| ||||||||||||||||||| Sbjct: 65817 ctcagatggagatgctgttggggatgcccat 65787
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccat 135 |||| |||||| ||||||||||||||||||| Sbjct: 27821687 ctcagatggagatgctgttggggatgcccat 27821657 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 105 ctcaaatggagctgctgttggggatgccc 133 ||||||||| | ||||||||||||||||| Sbjct: 14300017 ctcaaatggtgatgctgttggggatgccc 14300045 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgccc 133 |||||| ||||||||||||||||| Sbjct: 30026445 atggagatgctgttggggatgccc 30026422
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 106 tcaaatggagctgctgttggggatgcc 132 |||||||||| |||||||||||||||| Sbjct: 2774 tcaaatggagatgctgttggggatgcc 2748 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 acggcctgagcagcacatacggcaccatgccggcgcc 210 ||||| |||||||| | |||||||| ||||||||||| Sbjct: 2721 acggcttgagcagctcgtacggcacgatgccggcgcc 2685
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccat 135 |||| |||||| ||||||||||||||||||| Sbjct: 2920 ctcagatggagatgctgttggggatgcccat 2890
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccat 135 |||| |||||| ||||||||||||||||||| Sbjct: 27913011 ctcagatggagatgctgttggggatgcccat 27912981 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 105 ctcaaatggagctgctgttggggatgccc 133 ||||||||| | ||||||||||||||||| Sbjct: 14294992 ctcaaatggtgatgctgttggggatgccc 14295020 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgccc 133 |||||| ||||||||||||||||| Sbjct: 30117867 atggagatgctgttggggatgccc 30117844
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccat 135 |||| |||||| ||||||||||||||||||| Sbjct: 1333 ctcagatggagatgctgttggggatgcccat 1303
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccat 135 |||| |||||| ||||||||||||||||||| Sbjct: 2598 ctcagatggagatgctgttggggatgcccat 2568
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccat 135 |||| |||||| ||||||||||||||||||| Sbjct: 2928 ctcagatggagatgctgttggggatgcccat 2898
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgcccat 135 |||| |||||| ||||||||||||||||||| Sbjct: 1498 ctcagatggagatgctgttggggatgcccat 1468
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 174 acggcctgagcagcacatacggcaccatgccggcgccg 211 ||||| |||||||| | |||||||| |||||||||||| Sbjct: 2828 acggcttgagcagctcgtacggcacgatgccggcgccg 2791
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 104 gctcaaatggagctgctgttggggatgccc 133 ||||| |||||| ||||||||||||||||| Sbjct: 755 gctcagatggagatgctgttggggatgccc 726
>ref|NM_136917.2| Drosophila melanogaster gartenzwerg CG8487-RB, transcript variant B (garz), mRNA Length = 6278 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgc 131 |||||||||||||||||||||| Sbjct: 5808 atggagctgctgttggggatgc 5787
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 104 gctcaaatggagctgctgttggggatgccc 133 ||||| |||||| ||||||||||||||||| Sbjct: 4664 gctcagatggagatgctgttggggatgccc 4635
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 174 acggcctgagcagcacatacggcaccatgccggcgccg 211 ||||| |||||||| | |||||||| |||||||||||| Sbjct: 5277016 acggcttgagcagctcgtacggcacgatgccggcgccg 5277053
>gb|AC007476.5|AC007476 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR37P06, complete sequence Length = 171705 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgc 131 |||||||||||||||||||||| Sbjct: 21656 atggagctgctgttggggatgc 21635
>gb|AC007440.6|AC007440 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR37I09, complete sequence Length = 184621 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgc 131 |||||||||||||||||||||| Sbjct: 176291 atggagctgctgttggggatgc 176270
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 174 acggcctgagcagcacatacggcaccatgccggcgccg 211 ||||| |||||||| | |||||||| |||||||||||| Sbjct: 3319 acggcttgagcagctcgtacggcacgatgccggcgccg 3356
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 174 acggcctgagcagcacatacggcaccatgccggcgccg 211 ||||| |||||||| | |||||||| |||||||||||| Sbjct: 2827 acggcttgagcagctcgtacggcacgatgccggcgccg 2790
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full insert sequence Length = 2250 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 174 acggcctgagcagcacatacggcaccatgccggcgccg 211 ||||| |||||||| | |||||||| |||||||||||| Sbjct: 1989 acggcttgagcagctcgtacggcacgatgccggcgccg 1952
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 102 cagctcaaatggagctgctgttggggatgcccat 135 ||||||| |||||| |||||||||||||||||| Sbjct: 2768 cagctcagatggagacgctgttggggatgcccat 2735
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 104 gctcaaatggagctgctgttggggatgccc 133 ||||| |||||| ||||||||||||||||| Sbjct: 2066 gctcagatggagatgctgttggggatgccc 2037
>gb|AE003822.3| Drosophila melanogaster chromosome 2R, section 28 of 73 of the complete sequence Length = 233148 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgc 131 |||||||||||||||||||||| Sbjct: 44782 atggagctgctgttggggatgc 44761
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 105 ctcaaatggagctgctgttggggatgccc 133 |||| |||||| ||||||||||||||||| Sbjct: 907 ctcagatggagatgctgttggggatgccc 879
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 ctccacgatcttcctggtgct 276 ||||||||||||||||||||| Sbjct: 7684 ctccacgatcttcctggtgct 7704
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 105 ctcaaatggagctgctgttggggatgccc 133 ||||||||| | ||||||||||||||||| Sbjct: 49246 ctcaaatggtgatgctgttggggatgccc 49274
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 105 ctcaaatggagctgctgttggggatgccc 133 ||||||||| | ||||||||||||||||| Sbjct: 111405 ctcaaatggtgatgctgttggggatgccc 111433
>dbj|AP001743.1| Homo sapiens genomic DNA, chromosome 21q, section 87/105 Length = 219256 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 tccactcatccacctgctcca 260 ||||||||||||||||||||| Sbjct: 49785 tccactcatccacctgctcca 49805
>dbj|AP001614.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2042A8, MX1-D21S171 region, complete sequence Length = 81896 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 tccactcatccacctgctcca 260 ||||||||||||||||||||| Sbjct: 34126 tccactcatccacctgctcca 34146
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgccc 133 |||||| ||||||||||||||||| Sbjct: 2609 atggagatgctgttggggatgccc 2586
>ref|XM_524799.1| PREDICTED: Pan troglodytes similar to potassium voltage-gated channel, shaker-related subfamily, member 10; cyclic GMP gated potassium channel (LOC469414), mRNA Length = 1671 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 681 catctccatcaccatcttct 700
>ref|NM_005549.2| Homo sapiens potassium voltage-gated channel, shaker-related subfamily, member 10 (KCNA10), mRNA Length = 1959 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 1069 catctccatcaccatcttct 1088
>gb|BC074990.2| Homo sapiens potassium voltage-gated channel, shaker-related subfamily, member 10, mRNA (cDNA clone MGC:103916 IMAGE:30915306), complete cds Length = 1599 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 711 catctccatcaccatcttct 730
>gb|AC132405.3| Mus musculus BAC clone RP23-332I1 from chromosome 3, complete sequence Length = 207726 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 187186 catctccatcaccatcttct 187167
>ref|XM_582224.2| PREDICTED: Bos taurus similar to potassium voltage-gated channel, shaker-related subfamily, member 10 (LOC538721), mRNA Length = 1643 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 762 catctccatcaccatcttct 781
>ref|XM_983966.1| PREDICTED: Mus musculus potassium voltage-gated channel, shaker-related subfamily, member 10 (Kcna10), mRNA Length = 1826 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 840 catctccatcaccatcttct 859
>ref|XM_143471.4| PREDICTED: Mus musculus potassium voltage-gated channel, shaker-related subfamily, member 10 (Kcna10), mRNA Length = 1826 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 840 catctccatcaccatcttct 859
>emb|CR354437.13| Zebrafish DNA sequence from clone DKEY-11D10 in linkage group 23, complete sequence Length = 205907 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ctctccttgaactcctcaaa 294 |||||||||||||||||||| Sbjct: 3675 ctctccttgaactcctcaaa 3694
>ref|XM_854998.1| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5B, transcript variant 4 (LOC490969), mRNA Length = 2640 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 452 aactcctcaaatgtctggttgatc 429
>ref|XM_854961.1| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5B, transcript variant 3 (LOC490969), mRNA Length = 2814 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 452 aactcctcaaatgtctggttgatc 429
>ref|XM_854922.1| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5B, transcript variant 2 (LOC490969), mRNA Length = 2787 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 452 aactcctcaaatgtctggttgatc 429
>ref|XM_548092.2| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5B, transcript variant 1 (LOC490969), mRNA Length = 2797 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 453 aactcctcaaatgtctggttgatc 430
>ref|XM_854847.1| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5A, transcript variant 8 (LOC490968), mRNA Length = 2773 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 452 aactcctcaaatgtctggttgatc 429
>ref|XM_854813.1| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5A, transcript variant 7 (LOC490968), mRNA Length = 2749 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 452 aactcctcaaatgtctggttgatc 429
>ref|XM_854777.1| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5A, transcript variant 6 (LOC490968), mRNA Length = 2755 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 452 aactcctcaaatgtctggttgatc 429
>ref|XM_854742.1| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5A, transcript variant 5 (LOC490968), mRNA Length = 2644 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 452 aactcctcaaatgtctggttgatc 429
>ref|XM_854710.1| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5A, transcript variant 4 (LOC490968), mRNA Length = 2740 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 452 aactcctcaaatgtctggttgatc 429
>ref|XM_854676.1| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5A, transcript variant 3 (LOC490968), mRNA Length = 2557 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 452 aactcctcaaatgtctggttgatc 429
>ref|XM_548091.2| PREDICTED: Canis familiaris similar to Signal transducer and activator of transcription 5A, transcript variant 1 (LOC490968), mRNA Length = 2737 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aactcctcaaatgcctggttgatc 307 ||||||||||||| |||||||||| Sbjct: 452 aactcctcaaatgtctggttgatc 429
>ref|XM_547232.2| PREDICTED: Canis familiaris similar to potassium voltage-gated channel, shaker-related subfamily, member 10 (LOC490111), mRNA Length = 1650 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 795 catctccatcaccatcttct 814
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds Length = 1331 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgccc 133 |||||| ||||||||||||||||| Sbjct: 1082 atggagatgctgttggggatgccc 1059
>ref|XM_946728.1| Theileria annulata strain Ankara hypothetical protein (TA15705) partial mRNA Length = 1008 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ccatctccatcaccatcttc 151 |||||||||||||||||||| Sbjct: 95 ccatctccatcaccatcttc 76
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgccc 133 |||||| ||||||||||||||||| Sbjct: 2691 atggagatgctgttggggatgccc 2668
>emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on chromosome 1 Contains the 3' end of the PROK1 gene for Prokineticin 1, a putatative novel transcript, an unprocessed pseudogene, a novel transcript and the LOC395116 gene for the shaker subfamily potassium channel KCNA10, complete sequence Length = 101529 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 64506 catctccatcaccatcttct 64487
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 atggagctgctgttggggatgccc 133 |||||| ||||||||||||||||| Sbjct: 81306 atggagatgctgttggggatgccc 81329
>gb|BC077139.1| Danio rerio wu:fc51g12, mRNA (cDNA clone IMAGE:7146502), partial cds Length = 2835 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 ctccttgaactcctcaaatgcctg 300 |||||||||||||||||| ||||| Sbjct: 1903 ctccttgaactcctcaaaagcctg 1880
>gb|BC069165.1| Homo sapiens cDNA clone IMAGE:7216995 Length = 1959 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 891 catctccatcaccatcttct 872
>gb|AC010012.5| Drosophila melanogaster 3L BAC RP98-22J16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170466 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ccatctccatcaccatcttc 151 |||||||||||||||||||| Sbjct: 69693 ccatctccatcaccatcttc 69712
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 ccacctgctccacgatcttcctggtgct 276 |||| |||||||||||| |||||||||| Sbjct: 145177 ccacttgctccacgatcgtcctggtgct 145204
>dbj|AK157965.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930012I12 product:Cyclic GMP gated potassium channel homolog [Homo sapiens], full insert sequence Length = 1827 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 841 catctccatcaccatcttct 860
>ref|XM_688015.1| PREDICTED: Danio rerio hypothetical protein LOC553235 (LOC553235), mRNA Length = 4007 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 ctccttgaactcctcaaatgcctg 300 |||||||||||||||||| ||||| Sbjct: 1824 ctccttgaactcctcaaaagcctg 1801
>emb|BX324196.4| Zebrafish DNA sequence from clone CH211-142A12 in linkage group 23, complete sequence Length = 89652 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ctctccttgaactcctcaaa 294 |||||||||||||||||||| Sbjct: 37123 ctctccttgaactcctcaaa 37142
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgccc 133 |||||| ||||||||||||||||| Sbjct: 2591 atggagatgctgttggggatgccc 2568
>ref|XM_227577.3| PREDICTED: Rattus norvegicus potassium voltage-gated channel, shaker-related subfamily, member 10 (predicted) (Kcna10_predicted), mRNA Length = 1603 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 710 catctccatcaccatcttct 729
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgccc 133 |||||| ||||||||||||||||| Sbjct: 2724 atggagatgctgttggggatgccc 2701
>gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 of 83 of the complete sequence Length = 312072 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ccatctccatcaccatcttc 151 |||||||||||||||||||| Sbjct: 127765 ccatctccatcaccatcttc 127784
>gb|U96110.1|HSU96110 Homo sapiens cyclic GMP gated potassium channel (Kcn1) gene, complete cds Length = 1580 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 690 catctccatcaccatcttct 709
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds Length = 1814 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgccc 133 |||||| ||||||||||||||||| Sbjct: 1552 atggagatgctgttggggatgccc 1529
>gb|U46844.1|MSU46844 Mycobacterium smegmatis catalase-peroxidase (katG), putative arabinosyl transferase (embC, embA, embB), genes complete cds and putative propionyl-coA carboxylase beta chain (pccB) genes, partial cds Length = 16951 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ccacgatcttcctggtgctc 277 |||||||||||||||||||| Sbjct: 10313 ccacgatcttcctggtgctc 10332
>gb|U38182.1|OCU38182 Oryctolagus cuniculus cGMP-gated potassium channel (Kcn1) mRNA, complete cds Length = 2178 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 catctccatcaccatcttct 152 |||||||||||||||||||| Sbjct: 1320 catctccatcaccatcttct 1339
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atggagctgctgttggggatgccc 133 |||||| ||||||||||||||||| Sbjct: 2653 atggagatgctgttggggatgccc 2630
>emb|AL845502.5| Mouse DNA sequence from clone RP23-395A21 on chromosome 4, complete sequence Length = 163191 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cagctcaaatggagctgctg 121 |||||||||||||||||||| Sbjct: 12559 cagctcaaatggagctgctg 12578 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,291,101 Number of Sequences: 3902068 Number of extensions: 3291101 Number of successful extensions: 62274 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61946 Number of HSP's gapped (non-prelim): 328 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)